Strain Fitness in Shewanella amazonensis SB2B around Sama_2164

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,614,326	+		Sama_2163	0.77	+2.2
2,614,326	+		Sama_2163	0.77	-0.1
2,614,326	+		Sama_2163	0.77	+0.4
2,614,326	+		Sama_2163	0.77	+0.9
2,614,326	+		Sama_2163	0.77	-1.1
2,614,327	-		Sama_2163	0.77	+0.6
2,614,327	-		Sama_2163	0.77	-1.3
2,614,360	-		Sama_2163	0.78	+1.0
2,614,380	+		Sama_2163	0.78	-1.7
2,614,380	+		Sama_2163	0.78	-0.4
2,614,381	-		Sama_2163	0.78	-0.5
2,614,381	-		Sama_2163	0.78	-1.1
2,614,381	-		Sama_2163	0.78	-0.3
2,614,381	-		Sama_2163	0.78	+0.2
2,614,381	-		Sama_2163	0.78	+1.2
2,614,381	-		Sama_2163	0.78	+3.3
2,614,381	-		Sama_2163	0.78	+1.3
2,614,381	-		Sama_2163	0.78	+0.6
2,614,384	-		Sama_2163	0.79	-0.1
2,614,391	-		Sama_2163	0.79	+1.1
2,614,393	+		Sama_2163	0.79	+0.2
2,614,394	-		Sama_2163	0.79	+0.6
2,614,394	-		Sama_2163	0.79	-1.0
2,614,501	+		Sama_2163	0.83	-1.5
2,614,502	-		Sama_2163	0.83	-0.9
2,614,502	-		Sama_2163	0.83	-1.5
2,614,502	-		Sama_2163	0.83	-2.6
2,614,502	-		Sama_2163	0.83	-0.6
2,614,502	-		Sama_2163	0.83	-0.8
2,614,503	+		Sama_2163	0.83	-0.6
2,614,504	-		Sama_2163	0.83	-0.1
2,614,504	-		Sama_2163	0.83	+1.5
2,614,504	-		Sama_2163	0.83	+0.1
2,614,504	-		Sama_2163	0.83	+2.5
2,614,504	-		Sama_2163	0.83	-2.3
2,614,504	-		Sama_2163	0.83	+1.1
2,614,504	-		Sama_2163	0.83	-0.2
2,614,504	-		Sama_2163	0.83	-2.6
2,614,519	+		Sama_2163	0.83	+1.8
2,614,520	-		Sama_2163	0.83	+1.8
2,614,520	-		Sama_2163	0.83	+0.3
2,614,583	+		Sama_2163	0.86	+0.2
2,614,583	+		Sama_2163	0.86	-0.5
2,614,584	-		Sama_2163	0.86	+1.3
2,614,584	-		Sama_2163	0.86	-0.9
2,614,627	+		Sama_2163	0.87	+1.3
2,614,712	+				+1.0
2,614,745	+				-0.5
2,614,745	+				+1.7
2,614,745	+				+1.9
2,614,745	+				+1.4
2,614,745	+				-1.0
2,614,745	+				-2.1
2,614,745	+				+0.1
2,614,746	-				-0.1
2,614,746	-				+2.8
2,614,746	-				+1.3
2,614,746	-				+1.7
2,614,746	-				-0.7
2,614,749	+				-2.9
2,614,749	+				+1.5
2,614,749	+				+0.6
2,614,749	+				+0.2
2,614,749	+				+0.7
2,614,749	+				+0.7
2,614,750	-				+1.8
2,614,750	-				+0.2
2,614,750	-				+1.9
2,614,750	-				-0.2
2,614,750	-				-2.9
2,614,752	+				+0.7
2,614,753	-				-0.6
2,614,753	-				-1.9
2,614,759	+				-0.9
2,614,760	-				-2.0
2,614,760	-				+1.5
2,614,767	+				+0.1
2,614,871	+				+0.6
2,614,950	+				-1.7
2,614,965	+				-1.3
2,614,979	-				+2.7
2,614,996	+				+0.8
2,614,996	+				+0.7
2,614,996	+				-2.6
2,614,996	+				+0.1
2,614,996	+				+1.1
2,614,996	+				+1.9
2,614,996	+				+2.3
2,614,997	-				+0.1
2,615,044	-				-1.5
2,615,052	+				+0.6
2,615,053	-				+1.5
2,615,053	-				-1.5
2,615,065	-				-0.6
2,615,078	+				-2.1
2,615,078	+				+1.0
2,615,078	+				+0.3
2,615,078	+				-0.9
2,615,078	+				-2.2
2,615,078	+				-2.3
2,615,079	-				-0.3
2,615,079	-				-0.5
2,615,079	-				-0.4
2,615,079	-				-0.5
2,615,105	+				+1.2
2,615,106	-				-0.2
2,615,158	-				+0.7
2,615,158	-				+0.9
2,615,166	+				+0.9
2,615,167	-				+0.3
2,615,167	-				+1.3
2,615,167	-				-0.9
2,615,173	-				-1.2
2,615,274	+				+0.1
2,615,290	-				-0.1
2,615,312	-				+2.1
2,615,318	-				-0.0
2,615,329	+				-1.3
2,615,330	-				-2.0
2,615,337	+				-1.3
2,615,338	-				-0.4
2,615,346	+				+0.2
2,615,364	-				-0.9
2,615,364	-				-2.0
2,615,367	+				+1.1
2,615,368	-				-2.0
2,615,368	-				-2.2
2,615,368	-				-2.7
2,615,368	-				-1.3
2,615,416	-				-1.1
2,615,474	-				-2.2
2,615,474	-				-0.5
2,615,481	+				+1.2
2,615,504	-				+0.9
2,615,504	-				+0.2
2,615,605	+				-0.7
2,615,893	-		Sama_2164	0.14	-0.3
2,615,928	+		Sama_2164	0.14	+0.0
2,616,061	+		Sama_2164	0.17	-0.1
2,616,062	-		Sama_2164	0.17	-1.9
2,616,227	-		Sama_2164	0.21	-0.9
2,616,228	+		Sama_2164	0.21	-2.3
2,616,672	+		Sama_2164	0.32	-1.9
2,616,675	-		Sama_2164	0.32	-2.3
2,616,779	+		Sama_2164	0.34	-1.2
2,616,796	+		Sama_2164	0.35	-1.3
2,616,832	+		Sama_2164	0.35	-2.3
2,616,870	-		Sama_2164	0.36	-0.1
2,616,884	+		Sama_2164	0.37	+1.5
2,616,916	+		Sama_2164	0.37	-2.1
2,616,949	+		Sama_2164	0.38	+0.2
2,617,022	-		Sama_2164	0.40	-1.7
2,617,215	-		Sama_2164	0.44	-1.7
2,617,255	+		Sama_2164	0.45	+2.5
2,617,265	-		Sama_2164	0.45	+0.7
2,617,334	+		Sama_2164	0.47	+0.9
2,617,398	+		Sama_2164	0.49	-2.2
2,617,491	+		Sama_2164	0.51	-1.3
2,617,495	+		Sama_2164	0.51	-1.1
2,617,495	+		Sama_2164	0.51	-1.9
2,617,506	+		Sama_2164	0.51	+0.5
2,617,510	+		Sama_2164	0.51	-1.3
2,617,510	+		Sama_2164	0.51	-1.1
2,617,618	-		Sama_2164	0.54	-0.1
2,617,618	-		Sama_2164	0.54	-1.5
2,617,618	-		Sama_2164	0.54	+0.2
2,617,709	-		Sama_2164	0.56	-0.1
2,617,711	+		Sama_2164	0.56	-1.5
2,617,711	+		Sama_2164	0.56	-0.5
2,617,712	-		Sama_2164	0.56	+0.2
2,617,764	-		Sama_2164	0.57	-1.1
2,617,794	-		Sama_2164	0.58	-0.7
2,617,910	-		Sama_2164	0.60	+0.0
2,617,981	+		Sama_2164	0.62	-1.3
2,617,982	-		Sama_2164	0.62	-2.1
2,617,982	-		Sama_2164	0.62	-2.2
2,617,982	-		Sama_2164	0.62	-0.4
2,617,983	+		Sama_2164	0.62	-0.8
2,618,112	+		Sama_2164	0.65	-1.7
2,618,210	-		Sama_2164	0.67	+0.5
2,618,210	-		Sama_2164	0.67	-3.3
2,618,260	+		Sama_2164	0.69	-1.0
2,618,261	-		Sama_2164	0.69	-2.3
2,618,262	+		Sama_2164	0.69	+1.9
2,618,262	+		Sama_2164	0.69	-0.1
2,618,262	+		Sama_2164	0.69	-0.9
2,618,263	-		Sama_2164	0.69	-2.0
2,618,263	-		Sama_2164	0.69	+0.7
2,618,263	-		Sama_2164	0.69	-1.5
2,618,272	+		Sama_2164	0.69	-1.5
2,618,485	+		Sama_2164	0.74	-0.1
2,618,486	-		Sama_2164	0.74	-0.5
2,618,486	-		Sama_2164	0.74	-2.4
2,618,486	-		Sama_2164	0.74	+0.1
2,618,725	+		Sama_2164	0.79	-2.6
2,618,727	+		Sama_2164	0.79	-2.2
2,618,727	+		Sama_2164	0.79	+1.1
2,618,727	+		Sama_2164	0.79	-1.3
2,618,728	-		Sama_2164	0.80	-0.5
2,618,728	-		Sama_2164	0.80	-0.1
2,618,735	+		Sama_2164	0.80	-0.7
2,618,735	+		Sama_2164	0.80	-0.7
2,618,735	+		Sama_2164	0.80	-0.9
2,618,735	+		Sama_2164	0.80	-0.7
2,618,865	-		Sama_2164	0.83	-1.3
2,618,865	-		Sama_2164	0.83	-2.2
2,618,886	+		Sama_2164	0.83	-0.3
2,618,887	-		Sama_2164	0.83	-2.6
2,618,887	-		Sama_2164	0.83	-2.2
2,618,949	+		Sama_2164	0.85	-1.2
2,619,025	+		Sama_2164	0.86	-1.0
2,619,026	-		Sama_2164	0.86	-1.9
2,619,133	+		Sama_2164	0.89	-2.0
2,619,133	+		Sama_2164	0.89	-1.0
2,619,204	+				+0.1
2,619,208	+				-0.9
2,619,209	-				-2.9
2,619,263	-				-1.1
2,619,308	+				+0.5
2,619,308	+				-2.2
2,619,331	+				-1.1
2,619,332	-				+1.3
2,619,366	+				-1.1
2,619,366	+				+1.6
2,619,367	-				-1.6
2,619,367	-				+1.3
2,619,367	-				-0.7
2,619,367	-				-0.8
2,619,370	+				-2.4
2,619,370	+				-3.5
2,619,371	-				-0.9
2,619,388	+				-1.1
2,619,388	+				-2.2
2,619,389	-				-0.5
2,619,396	+				+0.5
2,619,396	+				-2.0
2,619,423	-				-1.0
2,619,441	+				-0.9
2,619,453	+				-1.3
2,619,454	-				-1.7
2,619,481	-				+0.7
2,619,481	-				-1.2
2,619,512	+				-1.5
2,619,513	-				-2.0
2,619,518	+				-0.2
2,619,523	+				+2.8
2,619,593	+				+0.6
2,619,649	+				+0.7
2,619,667	+				-0.4
2,619,667	+				-1.4
2,619,691	+				+3.1
2,619,691	+				+1.9
2,619,692	-				+0.0
2,619,692	-				-0.1
2,619,692	-				-2.2
2,619,710	-				-1.1
2,619,719	+				-0.6
2,619,720	-				-0.7
2,619,746	+		Sama_2165	0.11	-1.9
2,619,765	-		Sama_2165	0.15	+1.6
2,619,765	-		Sama_2165	0.15	-0.9
2,619,765	-		Sama_2165	0.15	+0.8
2,619,801	-		Sama_2165	0.24	-0.9
2,619,803	+		Sama_2165	0.24	-0.1
2,619,870	-		Sama_2165	0.40	+2.1
2,619,908	+		Sama_2165	0.48	-1.5
2,619,908	+		Sama_2165	0.48	+2.9
2,619,908	+		Sama_2165	0.48	-2.2
2,619,948	-		Sama_2165	0.58	-1.6
2,619,948	-		Sama_2165	0.58	+1.7
2,619,948	-		Sama_2165	0.58	+0.7
2,619,948	-		Sama_2165	0.58	-0.6
2,619,948	-		Sama_2165	0.58	+1.2
2,619,948	-		Sama_2165	0.58	+0.5
2,619,948	-		Sama_2165	0.58	-1.3
2,619,948	-		Sama_2165	0.58	-2.4
2,619,948	-		Sama_2165	0.58	-1.3
2,619,948	-		Sama_2165	0.58	-2.2
2,619,948	-		Sama_2165	0.58	+0.1
2,620,103	+				-0.7
2,620,103	+				+2.2
2,620,103	+				-0.4
2,620,103	+				-0.3
2,620,103	+				+2.1
2,620,103	+				+0.5
2,620,128	+				+1.7
2,620,129	-				+0.9
2,620,155	-				-0.1
2,620,155	-				-1.0
2,620,155	-				-0.9
2,620,159	+				-0.1
2,620,159	+				+1.0
2,620,159	+				-1.3
2,620,248	+				-1.5
2,620,248	+				+0.9
2,620,249	-				+0.5
2,620,251	+				+1.7
2,620,251	+				-0.5
2,620,251	+				-1.2
2,620,252	-				+0.7
2,620,252	-				-2.5
2,620,252	-				-0.5
2,620,252	-				-1.8
2,620,327	+				-0.9
2,620,328	-				-0.1
2,620,412	-		Sama_2166	0.27	+1.8
2,620,427	+		Sama_2166	0.33	-1.8
2,620,503	+		Sama_2166	0.64	+0.7
2,620,550	-		Sama_2166	0.83	-0.5
2,620,550	-		Sama_2166	0.83	-0.6
2,620,550	-		Sama_2166	0.83	-1.3
2,620,588	-				-1.8