Strain Fitness in Shewanella amazonensis SB2B around Sama_2151

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,596,634	-				+0.7
2,596,634	-				-0.5
2,596,671	+				-1.3
2,596,672	-				-3.1
2,596,672	-				+1.5
2,596,675	+				-3.2
2,596,903	+	truA	Sama_2150	0.24	-1.7
2,596,903	+	truA	Sama_2150	0.24	+0.8
2,596,904	-	truA	Sama_2150	0.24	-2.2
2,596,920	+	truA	Sama_2150	0.26	-0.9
2,596,920	+	truA	Sama_2150	0.26	-1.5
2,596,920	+	truA	Sama_2150	0.26	-1.9
2,596,920	+	truA	Sama_2150	0.26	-0.1
2,596,921	-	truA	Sama_2150	0.26	-2.0
2,596,921	-	truA	Sama_2150	0.26	-1.0
2,596,960	-	truA	Sama_2150	0.31	-2.1
2,596,960	-	truA	Sama_2150	0.31	-2.2
2,596,960	-	truA	Sama_2150	0.31	-0.2
2,596,960	-	truA	Sama_2150	0.31	-2.3
2,596,961	+	truA	Sama_2150	0.31	-2.3
2,596,961	+	truA	Sama_2150	0.31	-2.4
2,596,961	+	truA	Sama_2150	0.31	-1.9
2,596,961	+	truA	Sama_2150	0.31	-2.0
2,596,961	+	truA	Sama_2150	0.31	-2.0
2,596,961	+	truA	Sama_2150	0.31	-0.5
2,596,961	+	truA	Sama_2150	0.31	-2.1
2,596,961	+	truA	Sama_2150	0.31	-0.1
2,596,961	+	truA	Sama_2150	0.31	-0.5
2,596,961	+	truA	Sama_2150	0.31	-1.7
2,596,961	+	truA	Sama_2150	0.31	-1.9
2,596,962	-	truA	Sama_2150	0.32	-1.9
2,596,962	-	truA	Sama_2150	0.32	-1.3
2,596,962	-	truA	Sama_2150	0.32	-0.1
2,596,962	-	truA	Sama_2150	0.32	-1.9
2,596,962	-	truA	Sama_2150	0.32	-2.0
2,596,962	-	truA	Sama_2150	0.32	+0.1
2,596,962	-	truA	Sama_2150	0.32	-3.2
2,596,962	-	truA	Sama_2150	0.32	-1.7
2,596,962	-	truA	Sama_2150	0.32	-1.7
2,596,989	+	truA	Sama_2150	0.35	-2.0
2,596,990	-	truA	Sama_2150	0.35	-1.5
2,596,990	-	truA	Sama_2150	0.35	-1.9
2,596,990	-	truA	Sama_2150	0.35	-1.3
2,596,990	-	truA	Sama_2150	0.35	-1.1
2,596,990	-	truA	Sama_2150	0.35	-0.9
2,596,990	-	truA	Sama_2150	0.35	+1.5
2,596,990	-	truA	Sama_2150	0.35	-3.1
2,596,990	-	truA	Sama_2150	0.35	-2.3
2,596,993	+	truA	Sama_2150	0.35	+0.5
2,596,994	-	truA	Sama_2150	0.36	-1.5
2,596,994	-	truA	Sama_2150	0.36	-1.3
2,596,994	-	truA	Sama_2150	0.36	+0.5
2,597,010	+	truA	Sama_2150	0.38	-1.5
2,597,060	-	truA	Sama_2150	0.44	-2.8
2,597,060	-	truA	Sama_2150	0.44	-2.1
2,597,060	-	truA	Sama_2150	0.44	-0.5
2,597,111	+	truA	Sama_2150	0.51	-0.1
2,597,163	+	truA	Sama_2150	0.57	-2.6
2,597,164	-	truA	Sama_2150	0.57	-0.1
2,597,307	+	truA	Sama_2150	0.75	-1.5
2,597,339	-	truA	Sama_2150	0.80	-1.1
2,597,503	+				-0.5
2,597,504	-				-1.5
2,597,541	+				-1.9
2,597,542	-				+1.1
2,597,544	+				-1.5
2,597,545	-				-1.1
2,597,545	-				-0.7
2,597,599	-				-0.1
2,597,620	-				+0.2
2,597,620	-				-1.7
2,597,620	-				-1.7
2,597,620	-				-0.3
2,597,624	+				+2.7
2,597,624	+				+1.5
2,597,625	-				+1.5
2,597,730	+				+2.0
2,597,730	+				-2.6
2,597,731	-				-0.7
2,597,731	-				+0.3
2,597,825	+				+2.0
2,597,825	+				+0.9
2,597,825	+				+1.5
2,597,826	-				+0.3
2,597,826	-				+0.8
2,597,828	-				-0.3
2,597,828	-				+0.5
2,597,834	-				-1.1
2,597,899	+				+1.9
2,597,900	-		Sama_2151	0.10	-0.5
2,597,924	-		Sama_2151	0.11	+0.5
2,597,939	+		Sama_2151	0.11	-1.4
2,597,940	-		Sama_2151	0.11	-1.0
2,597,940	-		Sama_2151	0.11	+0.0
2,598,140	-		Sama_2151	0.19	-0.9
2,598,157	+		Sama_2151	0.19	+1.5
2,598,157	+		Sama_2151	0.19	+0.1
2,598,158	-		Sama_2151	0.19	-0.3
2,598,158	-		Sama_2151	0.19	-2.3
2,598,158	-		Sama_2151	0.19	-0.1
2,598,158	-		Sama_2151	0.19	-0.2
2,598,187	+		Sama_2151	0.20	-3.2
2,598,187	+		Sama_2151	0.20	+1.0
2,598,188	-		Sama_2151	0.20	-2.1
2,598,188	-		Sama_2151	0.20	-0.5
2,598,296	-		Sama_2151	0.24	-1.1
2,598,296	-		Sama_2151	0.24	-0.9
2,598,383	-		Sama_2151	0.27	-2.0
2,598,458	-		Sama_2151	0.30	-0.4
2,598,458	-		Sama_2151	0.30	+0.1
2,598,458	-		Sama_2151	0.30	+1.5
2,598,458	-		Sama_2151	0.30	+0.8
2,598,458	-		Sama_2151	0.30	-2.1
2,598,458	-		Sama_2151	0.30	-0.9
2,598,460	+		Sama_2151	0.30	-1.9
2,598,461	-		Sama_2151	0.30	-1.2
2,598,461	-		Sama_2151	0.30	+0.9
2,598,989	-		Sama_2151	0.49	-2.7
2,598,989	-		Sama_2151	0.49	-2.3
2,599,065	-		Sama_2151	0.51	-1.3
2,599,111	+		Sama_2151	0.53	-2.2
2,599,111	+		Sama_2151	0.53	-0.9
2,599,112	-		Sama_2151	0.53	-1.9
2,599,359	-		Sama_2151	0.62	-1.5
2,599,580	+		Sama_2151	0.70	-1.5
2,599,594	+		Sama_2151	0.70	-2.3
2,599,594	+		Sama_2151	0.70	-1.9
2,599,594	+		Sama_2151	0.70	-2.0
2,599,595	-		Sama_2151	0.70	-0.9
2,599,595	-		Sama_2151	0.70	-2.2
2,599,595	-		Sama_2151	0.70	-2.3
2,599,595	-		Sama_2151	0.70	-1.5
2,599,625	-		Sama_2151	0.71	-2.6
2,599,630	+		Sama_2151	0.71	-0.4
2,599,631	-		Sama_2151	0.72	-2.3
2,599,631	-		Sama_2151	0.72	-0.7
2,599,631	-		Sama_2151	0.72	-3.3
2,599,631	-		Sama_2151	0.72	+0.5
2,599,631	-		Sama_2151	0.72	-0.3
2,599,631	-		Sama_2151	0.72	-3.2
2,599,631	-		Sama_2151	0.72	+1.9
2,599,717	+		Sama_2151	0.75	-2.0
2,599,838	+		Sama_2151	0.79	-3.5
2,599,866	-		Sama_2151	0.80	+2.1
2,599,866	-		Sama_2151	0.80	-2.2
2,599,866	-		Sama_2151	0.80	-2.1
2,599,866	-		Sama_2151	0.80	+0.1
2,599,866	-		Sama_2151	0.80	-1.0
2,599,866	-		Sama_2151	0.80	+0.5
2,599,910	+		Sama_2151	0.81	-1.9
2,599,910	+		Sama_2151	0.81	-0.5
2,599,911	-		Sama_2151	0.81	-2.4
2,599,911	-		Sama_2151	0.81	-1.3
2,599,946	-		Sama_2151	0.83	-3.3
2,599,991	-		Sama_2151	0.84	-1.5
2,600,102	+		Sama_2151	0.88	-2.4
2,600,102	+		Sama_2151	0.88	+0.3
2,600,102	+		Sama_2151	0.88	-3.5
2,600,102	+		Sama_2151	0.88	-0.5
2,600,102	+		Sama_2151	0.88	-2.2
2,600,103	-		Sama_2151	0.88	-0.9
2,600,103	-		Sama_2151	0.88	-2.5
2,600,103	-		Sama_2151	0.88	-2.0
2,600,103	-		Sama_2151	0.88	-3.1
2,600,126	+		Sama_2151	0.89	-2.3
2,600,146	+		Sama_2151	0.90	-1.7
2,600,147	-		Sama_2151	0.90	-1.9
2,600,151	+				-1.5
2,600,151	+				-0.5
2,600,151	+				-0.9
2,600,152	-				-1.1
2,600,152	-				-2.2
2,600,152	-				-2.8
2,600,152	-				-2.4
2,600,152	-				-1.5
2,600,187	+				-1.7
2,600,188	-				-1.9
2,600,209	-				-1.7
2,600,273	-				-1.3
2,600,275	+				-1.7
2,600,276	-				-0.1
2,600,276	-				-2.8
2,600,276	-				-2.6
2,600,283	+				-2.2
2,600,283	+				-0.9
2,600,284	-				-2.1
2,600,284	-				-1.1
2,600,412	+				-2.9
2,600,437	-				-1.3
2,600,492	-				-2.3
2,600,508	-				-0.9
2,600,612	-				+1.4