Strain Fitness in Shewanella amazonensis SB2B around Sama_2142

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,586,271	+				-0.0
2,586,271	+				-1.7
2,586,271	+				-0.7
2,586,272	-				-1.3
2,586,272	-				-1.4
2,586,272	-				-1.4
2,586,293	+				+1.7
2,586,361	-				-2.5
2,586,454	+				-2.2
2,586,454	+				-0.4
2,586,454	+				-1.0
2,586,454	+				+0.4
2,586,455	-				+0.6
2,586,455	-				-1.7
2,586,455	-				-1.6
2,586,455	-				-0.2
2,586,455	-				-0.2
2,586,458	+				-2.5
2,586,458	+				+2.8
2,586,459	-				-1.6
2,586,459	-				+0.7
2,586,459	-				-0.6
2,586,459	-				-1.9
2,586,459	-				+0.2
2,586,459	-				-1.3
2,586,460	+				-0.1
2,586,460	+				+1.6
2,586,460	+				+0.4
2,586,460	+				-1.4
2,586,460	+				-0.6
2,586,460	+				-2.3
2,586,460	+				-0.2
2,586,461	-				-1.6
2,586,461	-				-1.9
2,586,461	-				-0.3
2,586,461	-				+1.7
2,586,461	-				+0.4
2,586,461	-				-0.9
2,586,461	-				+0.9
2,586,496	-				+1.4
2,586,500	-				-0.9
2,586,559	+				-0.2
2,586,560	-				-3.0
2,586,560	-				-0.9
2,586,595	+		Sama_2141	0.13	-1.1
2,586,631	-		Sama_2141	0.21	-0.6
2,586,651	+		Sama_2141	0.25	-0.4
2,586,651	+		Sama_2141	0.25	+2.1
2,586,652	-		Sama_2141	0.25	-1.7
2,586,652	-		Sama_2141	0.25	-0.4
2,586,652	-		Sama_2141	0.25	-1.1
2,586,652	-		Sama_2141	0.25	+0.8
2,586,652	-		Sama_2141	0.25	+1.4
2,586,710	+		Sama_2141	0.38	-0.3
2,586,711	-		Sama_2141	0.38	-1.6
2,586,728	+		Sama_2141	0.42	+0.3
2,586,728	+		Sama_2141	0.42	-0.7
2,586,729	-		Sama_2141	0.42	-0.6
2,586,742	-		Sama_2141	0.45	-3.1
2,586,742	-		Sama_2141	0.45	-0.4
2,586,800	+		Sama_2141	0.57	-1.4
2,586,949	-		Sama_2141	0.89	+0.2
2,586,999	-				-0.9
2,586,999	-				-0.2
2,586,999	-				-0.4
2,586,999	-				-1.4
2,586,999	-				-1.2
2,587,023	+				-1.5
2,587,023	+				-1.2
2,587,023	+				+0.8
2,587,023	+				+0.4
2,587,024	-				+1.6
2,587,031	+				-0.7
2,587,037	+				-0.4
2,587,038	-				-1.4
2,587,086	+				-1.3
2,587,099	-				+0.0
2,587,100	+				-2.2
2,587,100	+				+1.5
2,587,101	-				-1.6
2,587,175	+				-0.9
2,587,213	+				+2.8
2,587,309	+		Sama_2142	0.12	-1.3
2,587,310	-		Sama_2142	0.13	+0.6
2,587,324	+		Sama_2142	0.15	-2.6
2,587,345	+		Sama_2142	0.18	+0.6
2,587,346	-		Sama_2142	0.18	+1.4
2,587,346	-		Sama_2142	0.18	-1.2
2,587,346	-		Sama_2142	0.18	+1.1
2,587,506	+		Sama_2142	0.43	+0.2
2,587,509	-		Sama_2142	0.43	-1.4
2,587,509	-		Sama_2142	0.43	-0.6
2,587,509	-		Sama_2142	0.43	-1.7
2,587,509	-		Sama_2142	0.43	+0.3
2,587,509	-		Sama_2142	0.43	-1.9
2,587,545	+		Sama_2142	0.49	-1.6
2,587,697	+		Sama_2142	0.73	-0.8
2,587,697	+		Sama_2142	0.73	-0.8
2,587,697	+		Sama_2142	0.73	-1.3
2,587,698	-		Sama_2142	0.73	+0.5
2,587,698	-		Sama_2142	0.73	+0.3
2,587,698	-		Sama_2142	0.73	+0.4
2,587,698	-		Sama_2142	0.73	+0.8
2,587,698	-		Sama_2142	0.73	-0.6
2,587,698	-		Sama_2142	0.73	-1.7
2,587,758	+		Sama_2142	0.82	-1.2
2,587,762	+		Sama_2142	0.83	-1.4
2,587,859	+				-1.0
2,587,860	-				-2.8
2,587,866	+				-0.4
2,587,873	+				+2.2
2,587,892	-				-0.9
2,587,994	-				-1.4
2,588,005	+				-1.4
2,588,008	-				-1.2
2,588,008	-				+0.6
2,588,127	-				+1.3
2,588,168	+				+1.4
2,588,191	+		Sama_2143	0.11	-2.5
2,588,192	-		Sama_2143	0.11	-1.6
2,588,192	-		Sama_2143	0.11	-1.2
2,588,435	+		Sama_2143	0.29	-0.6
2,588,435	+		Sama_2143	0.29	+0.2
2,588,436	-		Sama_2143	0.30	+0.8
2,588,436	-		Sama_2143	0.30	+2.2
2,588,436	-		Sama_2143	0.30	-1.8
2,588,521	+		Sama_2143	0.36	-0.6
2,588,521	+		Sama_2143	0.36	+2.7
2,588,521	+		Sama_2143	0.36	-1.6
2,588,529	+		Sama_2143	0.37	+1.2
2,588,530	-		Sama_2143	0.37	+1.6
2,588,568	-		Sama_2143	0.40	-1.2
2,588,625	+		Sama_2143	0.44	-1.5
2,588,625	+		Sama_2143	0.44	-1.7
2,588,625	+		Sama_2143	0.44	+1.8
2,588,626	-		Sama_2143	0.44	+1.4
2,588,626	-		Sama_2143	0.44	+3.4
2,588,728	+		Sama_2143	0.52	-1.4
2,588,728	+		Sama_2143	0.52	+1.8
2,588,729	-		Sama_2143	0.52	-0.3
2,588,729	-		Sama_2143	0.52	-2.3
2,588,729	-		Sama_2143	0.52	+0.6
2,588,729	-		Sama_2143	0.52	-0.6
2,588,729	-		Sama_2143	0.52	-1.5
2,588,729	-		Sama_2143	0.52	+0.2
2,588,729	-		Sama_2143	0.52	+0.3
2,588,731	+		Sama_2143	0.52	-0.1
2,588,731	+		Sama_2143	0.52	+1.1
2,588,779	+		Sama_2143	0.56	+2.8
2,588,780	-		Sama_2143	0.56	+0.9
2,588,780	-		Sama_2143	0.56	+0.1
2,588,815	-		Sama_2143	0.58	-0.4
2,588,815	-		Sama_2143	0.58	-1.4
2,588,817	+		Sama_2143	0.58	-0.6
2,588,818	-		Sama_2143	0.58	-1.4