Strain Fitness in Shewanella amazonensis SB2B around Sama_2022

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,457,473	-	ushA	Sama_2021	0.65	-1.9
2,457,473	-	ushA	Sama_2021	0.65	+1.2
2,457,574	+	ushA	Sama_2021	0.71	-0.7
2,457,574	+	ushA	Sama_2021	0.71	+1.3
2,457,575	-	ushA	Sama_2021	0.71	-0.2
2,457,575	-	ushA	Sama_2021	0.71	+2.5
2,457,575	-	ushA	Sama_2021	0.71	+2.8
2,457,575	-	ushA	Sama_2021	0.71	-0.2
2,457,575	-	ushA	Sama_2021	0.71	+0.4
2,457,575	-	ushA	Sama_2021	0.71	+1.7
2,457,575	-	ushA	Sama_2021	0.71	-1.1
2,457,575	-	ushA	Sama_2021	0.71	-1.3
2,457,575	-	ushA	Sama_2021	0.71	-0.4
2,457,576	+	ushA	Sama_2021	0.71	+2.7
2,457,576	+	ushA	Sama_2021	0.71	-2.1
2,457,576	+	ushA	Sama_2021	0.71	-0.9
2,457,576	+	ushA	Sama_2021	0.71	-1.2
2,457,576	+	ushA	Sama_2021	0.71	-0.2
2,457,576	+	ushA	Sama_2021	0.71	-0.2
2,457,576	+	ushA	Sama_2021	0.71	+1.7
2,457,577	-	ushA	Sama_2021	0.71	+1.0
2,457,577	-	ushA	Sama_2021	0.71	-0.6
2,457,577	-	ushA	Sama_2021	0.71	+1.0
2,457,577	-	ushA	Sama_2021	0.71	-1.7
2,457,577	-	ushA	Sama_2021	0.71	+0.5
2,457,577	-	ushA	Sama_2021	0.71	-0.1
2,457,609	+	ushA	Sama_2021	0.73	-2.3
2,457,610	-	ushA	Sama_2021	0.73	+0.4
2,457,610	-	ushA	Sama_2021	0.73	-1.6
2,457,665	-	ushA	Sama_2021	0.76	-0.8
2,457,734	-	ushA	Sama_2021	0.80	+1.2
2,457,779	-	ushA	Sama_2021	0.83	-0.4
2,457,781	+	ushA	Sama_2021	0.83	-1.4
2,457,781	+	ushA	Sama_2021	0.83	-1.1
2,457,782	-	ushA	Sama_2021	0.83	-0.2
2,457,859	+	ushA	Sama_2021	0.88	+1.3
2,457,923	-				-0.9
2,457,943	+				+0.1
2,457,943	+				-0.9
2,457,944	-				+0.8
2,457,944	-				-1.8
2,457,944	-				-0.3
2,457,978	-				-1.2
2,457,978	-				-1.9
2,458,006	+				+0.4
2,458,007	-				+0.4
2,458,007	-				-2.5
2,458,061	-				-0.9
2,458,070	-				-0.8
2,458,070	-				-0.4
2,458,073	-				-0.4
2,458,152	-				-0.9
2,458,405	+				+0.2
2,458,430	+				-1.5
2,458,462	+				-2.2
2,458,462	+				+0.4
2,458,462	+				+2.4
2,458,463	-				+0.6
2,458,463	-				-1.2
2,458,463	-				-2.3
2,458,483	+				-1.6
2,458,483	+				-0.6
2,458,484	-				-1.8
2,458,486	+				+3.7
2,458,486	+				-1.8
2,458,487	-				+1.2
2,458,487	-				+0.7
2,458,487	-				+1.2
2,458,492	-				-1.2
2,458,527	-		Sama_2022	0.14	+0.7
2,458,670	+		Sama_2022	0.35	+3.6
2,458,670	+		Sama_2022	0.35	-1.1
2,458,671	-		Sama_2022	0.36	+0.4
2,458,783	-		Sama_2022	0.52	+2.5
2,458,872	+		Sama_2022	0.65	-1.9
2,458,872	+		Sama_2022	0.65	-0.9
2,458,887	-		Sama_2022	0.67	+0.4
2,458,887	-		Sama_2022	0.67	-0.6
2,458,902	+		Sama_2022	0.69	-0.9
2,458,902	+		Sama_2022	0.69	-2.2
2,458,902	+		Sama_2022	0.69	-0.9
2,458,902	+		Sama_2022	0.69	-1.2
2,458,903	-		Sama_2022	0.70	+0.8
2,458,903	-		Sama_2022	0.70	+0.7
2,458,903	-		Sama_2022	0.70	-1.6
2,458,903	-		Sama_2022	0.70	+1.3
2,458,904	+		Sama_2022	0.70	+0.0
2,458,904	+		Sama_2022	0.70	+0.8
2,458,904	+		Sama_2022	0.70	-0.2
2,458,904	+		Sama_2022	0.70	+1.4
2,458,904	+		Sama_2022	0.70	-1.2
2,458,905	-		Sama_2022	0.70	+0.2
2,458,905	-		Sama_2022	0.70	-0.4
2,458,949	-		Sama_2022	0.76	-0.1
2,458,949	-		Sama_2022	0.76	+1.4
2,458,950	+		Sama_2022	0.77	-0.8
2,458,951	-		Sama_2022	0.77	+1.2
2,458,951	-		Sama_2022	0.77	+0.2
2,458,951	-		Sama_2022	0.77	+1.1
2,459,078	-				-0.6
2,459,114	+				+1.1
2,459,122	-				-2.8
2,459,138	+		Sama_2023	0.11	+0.1
2,459,180	-		Sama_2023	0.29	+1.0
2,459,180	-		Sama_2023	0.29	-1.2
2,459,218	+		Sama_2023	0.45	-1.8
2,459,218	+		Sama_2023	0.45	+0.4
2,459,218	+		Sama_2023	0.45	-0.9
2,459,219	-		Sama_2023	0.46	-0.9
2,459,219	-		Sama_2023	0.46	-1.8
2,459,219	-		Sama_2023	0.46	-2.2
2,459,244	+		Sama_2023	0.57	-1.6
2,459,245	-		Sama_2023	0.57	-1.7
2,459,383	-				+0.4
2,459,385	+				-0.1
2,459,386	-				+1.3
2,459,391	+				+0.8
2,459,391	+				-0.8
2,459,392	-				+0.3
2,459,407	+				-2.3
2,459,407	+				+2.2
2,459,408	-				-0.7
2,459,408	-				+1.7
2,459,438	+				+1.3
2,459,438	+				+1.5
2,459,438	+				-2.7
2,459,439	-				-0.6
2,459,439	-				-1.8
2,459,441	+				+1.4
2,459,442	-				+0.8
2,459,463	-		Sama_2024	0.11	-0.4
2,459,550	+		Sama_2024	0.20	+0.2
2,459,551	-		Sama_2024	0.20	-0.4
2,459,556	+		Sama_2024	0.20	+1.0
2,459,615	+		Sama_2024	0.26	-1.8
2,459,616	-		Sama_2024	0.26	-1.9
2,459,627	+		Sama_2024	0.27	-1.8
2,459,628	-		Sama_2024	0.27	-1.9
2,459,628	-		Sama_2024	0.27	-2.3
2,459,628	-		Sama_2024	0.27	-1.1
2,459,628	-		Sama_2024	0.27	-1.2
2,459,628	-		Sama_2024	0.27	-2.1
2,459,631	+		Sama_2024	0.28	+0.4
2,459,631	+		Sama_2024	0.28	+0.1
2,459,632	-		Sama_2024	0.28	+0.3
2,459,632	-		Sama_2024	0.28	-2.4
2,459,769	+		Sama_2024	0.42	-0.6
2,459,770	-		Sama_2024	0.42	-1.6
2,459,770	-		Sama_2024	0.42	-1.1
2,459,813	+		Sama_2024	0.46	-1.5
2,459,813	+		Sama_2024	0.46	-1.2
2,459,813	+		Sama_2024	0.46	+0.7
2,459,814	-		Sama_2024	0.46	+1.4
2,459,953	+		Sama_2024	0.60	+0.3
2,459,958	+		Sama_2024	0.60	+1.3
2,459,958	+		Sama_2024	0.60	+0.4
2,459,959	-		Sama_2024	0.60	-1.3
2,459,959	-		Sama_2024	0.60	-1.6
2,459,959	-		Sama_2024	0.60	+1.5
2,459,959	-		Sama_2024	0.60	+1.1
2,459,960	+		Sama_2024	0.61	+0.7
2,459,961	-		Sama_2024	0.61	-0.8
2,459,961	-		Sama_2024	0.61	+1.9
2,460,089	+		Sama_2024	0.73	-0.8
2,460,089	+		Sama_2024	0.73	-2.2
2,460,089	+		Sama_2024	0.73	-1.6
2,460,089	+		Sama_2024	0.73	+0.3
2,460,090	-		Sama_2024	0.74	-0.1
2,460,090	-		Sama_2024	0.74	-0.0
2,460,090	-		Sama_2024	0.74	-1.4
2,460,090	-		Sama_2024	0.74	+0.4
2,460,090	-		Sama_2024	0.74	+0.3
2,460,090	-		Sama_2024	0.74	+0.6
2,460,090	-		Sama_2024	0.74	-0.9
2,460,090	-		Sama_2024	0.74	+2.6
2,460,090	-		Sama_2024	0.74	-0.9
2,460,090	-		Sama_2024	0.74	+1.9