Strain Fitness in Shewanella amazonensis SB2B around Sama_2021

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,455,465	+	ilvH	Sama_2019	0.72	-3.2
2,455,466	-	ilvH	Sama_2019	0.72	+0.4
2,455,510	-	ilvH	Sama_2019	0.81	-0.2
2,455,547	+	ilvH	Sama_2019	0.89	+0.1
2,455,547	+	ilvH	Sama_2019	0.89	+0.2
2,455,585	-				-1.4
2,455,585	-				-0.7
2,455,622	+				-0.8
2,455,622	+				+0.2
2,455,623	-				+1.6
2,455,659	-				+0.3
2,455,663	-				+0.2
2,455,712	-				-0.7
2,455,797	-		Sama_2020	0.20	-1.4
2,455,797	-		Sama_2020	0.20	+1.6
2,455,820	-		Sama_2020	0.25	+0.2
2,455,820	-		Sama_2020	0.25	-2.5
2,455,820	-		Sama_2020	0.25	-2.1
2,455,841	-		Sama_2020	0.30	+1.0
2,455,841	-		Sama_2020	0.30	-1.5
2,455,898	-		Sama_2020	0.42	-0.3
2,455,898	-		Sama_2020	0.42	-0.0
2,455,898	-		Sama_2020	0.42	-0.6
2,455,898	-		Sama_2020	0.42	-0.6
2,455,929	-		Sama_2020	0.49	-1.1
2,455,929	-		Sama_2020	0.49	-0.3
2,456,041	+		Sama_2020	0.75	+0.1
2,456,041	+		Sama_2020	0.75	-2.4
2,456,042	-		Sama_2020	0.75	-1.8
2,456,042	-		Sama_2020	0.75	+1.1
2,456,144	-				+0.0
2,456,147	+				+0.9
2,456,148	-				-0.6
2,456,148	-				+1.4
2,456,158	+				-2.2
2,456,159	-				-1.9
2,456,159	-				-1.5
2,456,159	-				+0.4
2,456,159	-				-2.5
2,456,160	+				-1.4
2,456,161	-				+0.4
2,456,161	-				-1.3
2,456,161	-				-1.2
2,456,161	-				+1.2
2,456,172	-				+0.3
2,456,178	+				-0.1
2,456,178	+				-0.2
2,456,179	-				-0.9
2,456,180	+				-0.8
2,456,180	+				-0.1
2,456,180	+				+1.4
2,456,215	+				+0.8
2,456,215	+				+0.4
2,456,215	+				-0.6
2,456,215	+				+1.4
2,456,216	-				-0.5
2,456,221	-				+0.5
2,456,221	-				+0.3
2,456,236	-				+1.0
2,456,267	+				-0.6
2,456,267	+				+0.1
2,456,267	+				-1.2
2,456,268	-				-0.8
2,456,268	-				+1.2
2,456,356	-				-0.6
2,456,417	-				-2.2
2,456,417	-				-0.8
2,456,424	+				+1.8
2,456,425	-				-0.4
2,456,466	+				-1.7
2,456,467	-				-1.1
2,456,483	+				-0.3
2,456,483	+				-1.2
2,456,483	+				-0.6
2,456,484	-				-0.1
2,456,484	-				-0.3
2,456,484	-				-1.9
2,456,484	-				+1.7
2,456,487	+				+0.3
2,456,511	-				-2.1
2,456,562	+	ushA	Sama_2021	0.12	+0.4
2,456,562	+	ushA	Sama_2021	0.12	-0.2
2,456,563	-	ushA	Sama_2021	0.12	-0.9
2,456,563	-	ushA	Sama_2021	0.12	-1.2
2,456,563	-	ushA	Sama_2021	0.12	-1.8
2,456,623	+	ushA	Sama_2021	0.16	-1.5
2,456,623	+	ushA	Sama_2021	0.16	+0.7
2,456,624	-	ushA	Sama_2021	0.16	+0.4
2,456,624	-	ushA	Sama_2021	0.16	+1.7
2,456,624	-	ushA	Sama_2021	0.16	-0.7
2,456,661	+	ushA	Sama_2021	0.18	+1.9
2,456,662	-	ushA	Sama_2021	0.18	-1.1
2,456,662	-	ushA	Sama_2021	0.18	-0.9
2,456,683	+	ushA	Sama_2021	0.19	-1.6
2,456,703	+	ushA	Sama_2021	0.20	-0.1
2,456,703	+	ushA	Sama_2021	0.20	+1.0
2,456,704	-	ushA	Sama_2021	0.20	-0.9
2,456,762	+	ushA	Sama_2021	0.24	-0.8
2,456,771	+	ushA	Sama_2021	0.24	-2.1
2,456,831	+	ushA	Sama_2021	0.28	+2.4
2,456,832	-	ushA	Sama_2021	0.28	+0.1
2,456,832	-	ushA	Sama_2021	0.28	+1.1
2,456,832	-	ushA	Sama_2021	0.28	+0.1
2,456,856	-	ushA	Sama_2021	0.29	-0.6
2,456,906	+	ushA	Sama_2021	0.32	+0.6
2,456,906	+	ushA	Sama_2021	0.32	-0.9
2,456,907	-	ushA	Sama_2021	0.32	+0.5
2,456,907	-	ushA	Sama_2021	0.32	-0.5
2,456,912	-	ushA	Sama_2021	0.33	+0.7
2,456,986	-	ushA	Sama_2021	0.37	-1.8
2,456,986	-	ushA	Sama_2021	0.37	-0.8
2,456,988	+	ushA	Sama_2021	0.37	-2.8
2,456,989	-	ushA	Sama_2021	0.37	-0.9
2,456,989	-	ushA	Sama_2021	0.37	-1.9
2,457,036	-	ushA	Sama_2021	0.40	+0.3
2,457,036	-	ushA	Sama_2021	0.40	+0.1
2,457,036	-	ushA	Sama_2021	0.40	-0.9
2,457,041	+	ushA	Sama_2021	0.40	-0.9
2,457,046	+	ushA	Sama_2021	0.40	-1.6
2,457,046	+	ushA	Sama_2021	0.40	+0.7
2,457,046	+	ushA	Sama_2021	0.40	+0.5
2,457,046	+	ushA	Sama_2021	0.40	+0.7
2,457,047	-	ushA	Sama_2021	0.40	+0.4
2,457,047	-	ushA	Sama_2021	0.40	+0.7
2,457,047	-	ushA	Sama_2021	0.40	+0.9
2,457,047	-	ushA	Sama_2021	0.40	+2.1
2,457,135	+	ushA	Sama_2021	0.46	+0.7
2,457,159	+	ushA	Sama_2021	0.47	-1.0
2,457,159	+	ushA	Sama_2021	0.47	-0.9
2,457,159	+	ushA	Sama_2021	0.47	+1.1
2,457,160	-	ushA	Sama_2021	0.47	+1.1
2,457,160	-	ushA	Sama_2021	0.47	-0.1
2,457,160	-	ushA	Sama_2021	0.47	-1.8
2,457,160	-	ushA	Sama_2021	0.47	+1.0
2,457,160	-	ushA	Sama_2021	0.47	-0.6
2,457,160	-	ushA	Sama_2021	0.47	-0.6
2,457,160	-	ushA	Sama_2021	0.47	-1.9
2,457,214	+	ushA	Sama_2021	0.50	-1.6
2,457,215	-	ushA	Sama_2021	0.50	+0.4
2,457,244	-	ushA	Sama_2021	0.52	-2.4
2,457,244	-	ushA	Sama_2021	0.52	+0.4
2,457,265	+	ushA	Sama_2021	0.53	-2.1
2,457,265	+	ushA	Sama_2021	0.53	+0.2
2,457,266	-	ushA	Sama_2021	0.53	-0.1
2,457,266	-	ushA	Sama_2021	0.53	-1.4
2,457,379	-	ushA	Sama_2021	0.60	-0.3
2,457,379	-	ushA	Sama_2021	0.60	+1.4
2,457,379	-	ushA	Sama_2021	0.60	-0.4
2,457,379	-	ushA	Sama_2021	0.60	-2.0
2,457,473	-	ushA	Sama_2021	0.65	-1.9
2,457,473	-	ushA	Sama_2021	0.65	+1.2
2,457,574	+	ushA	Sama_2021	0.71	-0.7
2,457,574	+	ushA	Sama_2021	0.71	+1.3
2,457,575	-	ushA	Sama_2021	0.71	-0.2
2,457,575	-	ushA	Sama_2021	0.71	+2.5
2,457,575	-	ushA	Sama_2021	0.71	+2.8
2,457,575	-	ushA	Sama_2021	0.71	-0.2
2,457,575	-	ushA	Sama_2021	0.71	+0.4
2,457,575	-	ushA	Sama_2021	0.71	+1.7
2,457,575	-	ushA	Sama_2021	0.71	-1.1
2,457,575	-	ushA	Sama_2021	0.71	-1.3
2,457,575	-	ushA	Sama_2021	0.71	-0.4
2,457,576	+	ushA	Sama_2021	0.71	+2.7
2,457,576	+	ushA	Sama_2021	0.71	-2.1
2,457,576	+	ushA	Sama_2021	0.71	-0.9
2,457,576	+	ushA	Sama_2021	0.71	-1.2
2,457,576	+	ushA	Sama_2021	0.71	-0.2
2,457,576	+	ushA	Sama_2021	0.71	-0.2
2,457,576	+	ushA	Sama_2021	0.71	+1.7
2,457,577	-	ushA	Sama_2021	0.71	+1.0
2,457,577	-	ushA	Sama_2021	0.71	-0.6
2,457,577	-	ushA	Sama_2021	0.71	+1.0
2,457,577	-	ushA	Sama_2021	0.71	-1.7
2,457,577	-	ushA	Sama_2021	0.71	+0.5
2,457,577	-	ushA	Sama_2021	0.71	-0.1
2,457,609	+	ushA	Sama_2021	0.73	-2.3
2,457,610	-	ushA	Sama_2021	0.73	+0.4
2,457,610	-	ushA	Sama_2021	0.73	-1.6
2,457,665	-	ushA	Sama_2021	0.76	-0.8
2,457,734	-	ushA	Sama_2021	0.80	+1.2
2,457,779	-	ushA	Sama_2021	0.83	-0.4
2,457,781	+	ushA	Sama_2021	0.83	-1.4
2,457,781	+	ushA	Sama_2021	0.83	-1.1
2,457,782	-	ushA	Sama_2021	0.83	-0.2
2,457,859	+	ushA	Sama_2021	0.88	+1.3
2,457,923	-				-0.9
2,457,943	+				+0.1
2,457,943	+				-0.9
2,457,944	-				+0.8
2,457,944	-				-1.8
2,457,944	-				-0.3
2,457,978	-				-1.2
2,457,978	-				-1.9
2,458,006	+				+0.4
2,458,007	-				+0.4
2,458,007	-				-2.5
2,458,061	-				-0.9
2,458,070	-				-0.8
2,458,070	-				-0.4
2,458,073	-				-0.4
2,458,152	-				-0.9
2,458,405	+				+0.2
2,458,430	+				-1.5
2,458,462	+				-2.2
2,458,462	+				+0.4
2,458,462	+				+2.4
2,458,463	-				+0.6
2,458,463	-				-1.2
2,458,463	-				-2.3
2,458,483	+				-1.6
2,458,483	+				-0.6
2,458,484	-				-1.8
2,458,486	+				+3.7
2,458,486	+				-1.8
2,458,487	-				+1.2
2,458,487	-				+0.7
2,458,487	-				+1.2
2,458,492	-				-1.2
2,458,527	-		Sama_2022	0.14	+0.7
2,458,670	+		Sama_2022	0.35	+3.6
2,458,670	+		Sama_2022	0.35	-1.1
2,458,671	-		Sama_2022	0.36	+0.4
2,458,783	-		Sama_2022	0.52	+2.5
2,458,872	+		Sama_2022	0.65	-1.9
2,458,872	+		Sama_2022	0.65	-0.9
2,458,887	-		Sama_2022	0.67	+0.4
2,458,887	-		Sama_2022	0.67	-0.6
2,458,902	+		Sama_2022	0.69	-0.9
2,458,902	+		Sama_2022	0.69	-2.2
2,458,902	+		Sama_2022	0.69	-0.9
2,458,902	+		Sama_2022	0.69	-1.2
2,458,903	-		Sama_2022	0.70	+0.8
2,458,903	-		Sama_2022	0.70	+0.7
2,458,903	-		Sama_2022	0.70	-1.6
2,458,903	-		Sama_2022	0.70	+1.3
2,458,904	+		Sama_2022	0.70	+0.0
2,458,904	+		Sama_2022	0.70	+0.8
2,458,904	+		Sama_2022	0.70	-0.2
2,458,904	+		Sama_2022	0.70	+1.4
2,458,904	+		Sama_2022	0.70	-1.2
2,458,905	-		Sama_2022	0.70	+0.2
2,458,905	-		Sama_2022	0.70	-0.4
2,458,949	-		Sama_2022	0.76	-0.1
2,458,949	-		Sama_2022	0.76	+1.4
2,458,950	+		Sama_2022	0.77	-0.8
2,458,951	-		Sama_2022	0.77	+1.2
2,458,951	-		Sama_2022	0.77	+0.2
2,458,951	-		Sama_2022	0.77	+1.1