Strain Fitness in Shewanella amazonensis SB2B around Sama_2012

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,444,590	-		Sama_2011	0.56	-1.8
2,444,634	+		Sama_2011	0.58	-0.2
2,444,659	-		Sama_2011	0.60	+1.8
2,444,686	-		Sama_2011	0.61	+4.3
2,444,686	-		Sama_2011	0.61	-0.6
2,444,686	-		Sama_2011	0.61	+0.6
2,444,686	-		Sama_2011	0.61	-0.4
2,444,784	+		Sama_2011	0.65	+1.4
2,444,784	+		Sama_2011	0.65	+1.4
2,444,784	+		Sama_2011	0.65	-0.0
2,444,784	+		Sama_2011	0.65	+1.8
2,444,784	+		Sama_2011	0.65	-1.3
2,444,785	-		Sama_2011	0.65	+3.3
2,444,785	-		Sama_2011	0.65	+0.5
2,444,785	-		Sama_2011	0.65	+0.8
2,444,785	-		Sama_2011	0.65	-0.3
2,444,785	-		Sama_2011	0.65	+0.1
2,444,785	-		Sama_2011	0.65	-1.2
2,444,785	-		Sama_2011	0.65	-2.4
2,444,785	-		Sama_2011	0.65	+0.8
2,444,786	+		Sama_2011	0.65	-0.6
2,444,786	+		Sama_2011	0.65	-0.6
2,444,787	-		Sama_2011	0.65	+1.1
2,444,787	-		Sama_2011	0.65	+0.9
2,444,787	-		Sama_2011	0.65	-1.0
2,444,787	-		Sama_2011	0.65	-1.5
2,444,788	+		Sama_2011	0.65	+1.4
2,444,788	+		Sama_2011	0.65	-0.6
2,444,789	-		Sama_2011	0.66	+0.1
2,444,797	-		Sama_2011	0.66	-1.1
2,444,845	-		Sama_2011	0.68	-0.0
2,445,032	+		Sama_2011	0.77	+0.4
2,445,032	+		Sama_2011	0.77	-0.2
2,445,080	-		Sama_2011	0.79	+0.6
2,445,136	+		Sama_2011	0.81	-0.9
2,445,235	+		Sama_2011	0.86	-1.2
2,445,236	-		Sama_2011	0.86	+0.0
2,445,236	-		Sama_2011	0.86	-0.4
2,445,236	-		Sama_2011	0.86	-1.5
2,445,303	+		Sama_2011	0.89	-0.5
2,445,303	+		Sama_2011	0.89	+0.8
2,445,303	+		Sama_2011	0.89	+0.2
2,445,303	+		Sama_2011	0.89	-1.8
2,445,304	-		Sama_2011	0.89	-1.9
2,445,304	-		Sama_2011	0.89	+2.0
2,445,304	-		Sama_2011	0.89	+0.0
2,445,304	-		Sama_2011	0.89	+0.0
2,445,328	+				+0.4
2,445,328	+				+1.6
2,445,328	+				-0.7
2,445,385	+				-2.2
2,445,392	-				+2.2
2,445,396	+				-2.4
2,445,397	-				-1.0
2,445,397	-				+0.7
2,445,415	-				-1.8
2,445,416	+				-1.3
2,445,416	+				-1.2
2,445,416	+				+1.8
2,445,416	+				+2.5
2,445,416	+				+1.2
2,445,417	-				+0.1
2,445,417	-				-1.4
2,445,422	+				+1.4
2,445,481	-				-1.6
2,445,518	-				+0.2
2,445,518	-				-1.5
2,445,685	+				-0.2
2,445,717	+		Sama_2012	0.10	-2.6
2,445,717	+		Sama_2012	0.10	+1.2
2,445,811	+		Sama_2012	0.16	-1.9
2,445,811	+		Sama_2012	0.16	+0.9
2,445,812	-		Sama_2012	0.16	-2.2
2,445,923	+		Sama_2012	0.24	-0.2
2,445,924	-		Sama_2012	0.24	+1.4
2,445,924	-		Sama_2012	0.24	-2.1
2,445,927	+		Sama_2012	0.24	-0.5
2,445,928	-		Sama_2012	0.24	-0.2
2,445,965	+		Sama_2012	0.27	-0.7
2,445,966	-		Sama_2012	0.27	+1.4
2,445,974	+		Sama_2012	0.27	-0.8
2,445,975	-		Sama_2012	0.27	+0.2
2,446,030	+		Sama_2012	0.31	-1.8
2,446,030	+		Sama_2012	0.31	-0.4
2,446,031	-		Sama_2012	0.31	+1.5
2,446,065	+		Sama_2012	0.33	-0.4
2,446,065	+		Sama_2012	0.33	+0.0
2,446,102	+		Sama_2012	0.36	-2.1
2,446,102	+		Sama_2012	0.36	-1.3
2,446,102	+		Sama_2012	0.36	+0.1
2,446,102	+		Sama_2012	0.36	-0.4
2,446,102	+		Sama_2012	0.36	+1.1
2,446,102	+		Sama_2012	0.36	+0.4
2,446,102	+		Sama_2012	0.36	+0.7
2,446,103	-		Sama_2012	0.36	-0.9
2,446,103	-		Sama_2012	0.36	-1.8
2,446,103	-		Sama_2012	0.36	-2.5
2,446,103	-		Sama_2012	0.36	+3.2
2,446,273	+		Sama_2012	0.47	-0.6
2,446,274	-		Sama_2012	0.47	+0.5
2,446,382	+		Sama_2012	0.54	-0.5
2,446,455	+		Sama_2012	0.59	+0.1
2,446,504	+		Sama_2012	0.62	+2.4
2,446,524	+		Sama_2012	0.64	-0.2
2,446,524	+		Sama_2012	0.64	+1.8
2,446,525	-		Sama_2012	0.64	+2.8
2,446,525	-		Sama_2012	0.64	+0.5
2,446,536	-		Sama_2012	0.64	+0.4
2,446,633	-		Sama_2012	0.71	+1.6
2,446,680	+		Sama_2012	0.74	-1.6
2,446,681	-		Sama_2012	0.74	+0.8
2,446,698	+		Sama_2012	0.75	+1.3
2,446,698	+		Sama_2012	0.75	+0.4
2,446,698	+		Sama_2012	0.75	-1.6
2,446,698	+		Sama_2012	0.75	-0.2
2,446,699	-		Sama_2012	0.75	+1.2
2,446,699	-		Sama_2012	0.75	+1.0
2,446,699	-		Sama_2012	0.75	-0.2
2,446,779	-		Sama_2012	0.81	+3.1
2,446,831	+		Sama_2012	0.84	-2.3
2,446,832	-		Sama_2012	0.84	+0.4
2,446,838	-		Sama_2012	0.84	-0.9
2,446,838	-		Sama_2012	0.84	+1.0
2,446,874	-		Sama_2012	0.87	+2.1
2,446,918	+		Sama_2012	0.90	+0.2
2,446,919	-		Sama_2012	0.90	+0.9
2,446,979	+				-0.0
2,447,024	+				+1.4
2,447,029	+				+0.4
2,447,073	+				-2.0
2,447,073	+				+0.4
2,447,089	-				+0.2
2,447,089	-				+2.3
2,447,090	+				+1.0
2,447,091	-				+1.5
2,447,105	+				+1.4
2,447,105	+				+0.7
2,447,106	-				+4.5
2,447,106	-				-0.2
2,447,168	+				-0.0
2,447,168	+				+1.4
2,447,244	+				+1.4
2,447,253	+				-0.6
2,447,254	-				-0.0
2,447,254	-				-2.1
2,447,260	-				+0.5
2,447,310	+				+1.0
2,447,313	+				+2.4
2,447,313	+				+1.0
2,447,371	+				+1.0
2,447,371	+				+0.2
2,447,375	+				+0.2
2,447,376	-				-0.9
2,447,419	+				-0.5
2,447,419	+				+0.3
2,447,451	-				+1.0
2,447,464	+				+1.7
2,447,464	+				-0.4
2,447,476	+				+0.7
2,447,476	+				-2.2
2,447,476	+				-1.2
2,447,476	+				+0.7
2,447,476	+				+1.8
2,447,477	-				-0.6
2,447,477	-				+1.0
2,447,477	-				-0.6
2,447,510	+		Sama_2013	0.16	-1.5
2,447,510	+		Sama_2013	0.16	+0.4
2,447,510	+		Sama_2013	0.16	-1.4
2,447,511	-		Sama_2013	0.16	-2.4
2,447,674	+				+1.0
2,447,801	+				+2.0
2,447,801	+				+1.9
2,447,801	+				+0.5
2,447,801	+				+2.4
2,447,802	-				+1.4
2,447,802	-				+1.1
2,447,802	-				-0.9
2,447,802	-				-1.2
2,447,802	-				+0.5
2,447,802	-				+0.9
2,447,802	-				-0.6
2,447,802	-				-1.6
2,447,802	-				-0.6
2,447,802	-				-0.2
2,447,803	+				-1.8
2,447,803	+				+2.4
2,447,803	+				+0.4
2,447,804	-				-1.6
2,447,804	-				-1.9
2,447,804	-				-1.4
2,447,830	+				-2.7
2,447,830	+				-0.9
2,447,871	+				+0.9
2,447,933	+		Sama_2014	0.12	+1.1
2,447,933	+		Sama_2014	0.12	-1.4
2,447,956	+		Sama_2014	0.13	-1.9
2,447,956	+		Sama_2014	0.13	-0.6
2,447,956	+		Sama_2014	0.13	+0.2
2,447,956	+		Sama_2014	0.13	+1.0
2,447,957	-		Sama_2014	0.13	+1.4
2,447,957	-		Sama_2014	0.13	-2.3
2,447,957	-		Sama_2014	0.13	-1.1
2,447,958	+		Sama_2014	0.13	-0.6
2,447,958	+		Sama_2014	0.13	-0.8
2,447,958	+		Sama_2014	0.13	+1.1
2,447,959	-		Sama_2014	0.14	-0.6
2,447,959	-		Sama_2014	0.14	-2.7
2,447,959	-		Sama_2014	0.14	-0.5
2,447,959	-		Sama_2014	0.14	+1.7
2,447,959	-		Sama_2014	0.14	-1.7
2,447,959	-		Sama_2014	0.14	-1.4
2,447,959	-		Sama_2014	0.14	+1.8
2,448,000	-		Sama_2014	0.16	-1.6
2,448,020	+		Sama_2014	0.17	-0.5
2,448,021	-		Sama_2014	0.17	+0.2
2,448,021	-		Sama_2014	0.17	-1.4