Strain Fitness in Shewanella amazonensis SB2B around Sama_1954

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,382,146	+				+0.9
2,382,229	-				+1.0
2,382,229	-				-1.8
2,382,290	+				-0.2
2,382,291	-				-0.8
2,382,302	-				-0.5
2,382,350	-				-0.4
2,382,350	-				-0.2
2,382,363	+				-0.8
2,382,363	+				+3.8
2,382,366	+				+2.6
2,382,391	-				+0.0
2,382,396	+				-1.5
2,382,396	+				+0.1
2,382,396	+				-0.2
2,382,397	-				+0.1
2,382,397	-				-1.0
2,382,397	-				-0.6
2,382,463	+				-1.4
2,382,464	-				-1.0
2,382,606	+		Sama_1954	0.12	-1.1
2,382,606	+		Sama_1954	0.12	+0.0
2,382,607	-		Sama_1954	0.12	-2.2
2,382,607	-		Sama_1954	0.12	-2.0
2,382,647	-		Sama_1954	0.14	-1.4
2,382,647	-		Sama_1954	0.14	-2.8
2,382,649	-		Sama_1954	0.14	+0.8
2,382,704	+		Sama_1954	0.18	-1.6
2,382,837	+		Sama_1954	0.27	+0.4
2,382,879	+		Sama_1954	0.30	-0.4
2,382,879	+		Sama_1954	0.30	+0.4
2,382,919	-		Sama_1954	0.32	-1.5
2,382,940	+		Sama_1954	0.34	-0.3
2,382,940	+		Sama_1954	0.34	-2.1
2,382,940	+		Sama_1954	0.34	-1.6
2,382,941	-		Sama_1954	0.34	+1.0
2,382,941	-		Sama_1954	0.34	+0.3
2,382,941	-		Sama_1954	0.34	-1.4
2,382,970	+		Sama_1954	0.36	-1.2
2,382,970	+		Sama_1954	0.36	-2.0
2,382,970	+		Sama_1954	0.36	+0.0
2,382,971	-		Sama_1954	0.36	-1.2
2,382,972	+		Sama_1954	0.36	-1.3
2,383,026	+		Sama_1954	0.39	-1.0
2,383,098	+		Sama_1954	0.44	+1.4
2,383,098	+		Sama_1954	0.44	+0.8
2,383,099	-		Sama_1954	0.44	+0.1
2,383,336	-		Sama_1954	0.60	-2.1
2,383,336	-		Sama_1954	0.60	-0.3
2,383,336	-		Sama_1954	0.60	-0.4
2,383,358	+		Sama_1954	0.61	-1.2
2,383,358	+		Sama_1954	0.61	+0.6
2,383,358	+		Sama_1954	0.61	+0.6
2,383,358	+		Sama_1954	0.61	-0.9
2,383,359	-		Sama_1954	0.61	-3.4
2,383,359	-		Sama_1954	0.61	-1.0
2,383,359	-		Sama_1954	0.61	-2.7
2,383,400	+		Sama_1954	0.64	-1.4
2,383,406	+		Sama_1954	0.64	-2.5
2,383,406	+		Sama_1954	0.64	+0.4
2,383,406	+		Sama_1954	0.64	-1.4
2,383,453	-		Sama_1954	0.68	-1.7
2,383,697	+		Sama_1954	0.84	-1.0
2,383,977	-				-2.9
2,383,987	+				-1.6
2,384,080	+				-0.4
2,384,080	+				+0.7
2,384,080	+				+1.0
2,384,080	+				+0.6
2,384,081	-				-1.0
2,384,081	-				+0.4
2,384,081	-				+1.8
2,384,081	-				+0.8
2,384,081	-				+0.5
2,384,084	+				+0.0
2,384,084	+				-2.2
2,384,084	+				-0.5
2,384,085	-				+2.0
2,384,085	-				-0.8
2,384,085	-				-2.6
2,384,085	-				+0.5
2,384,085	-				+0.6
2,384,085	-				+1.9
2,384,091	+				-0.9
2,384,091	+				-0.9
2,384,091	+				-0.6
2,384,091	+				-1.2
2,384,091	+				+0.8
2,384,091	+				-1.8
2,384,091	+				-0.2
2,384,091	+				-0.8
2,384,092	-				+2.9
2,384,092	-				+1.1
2,384,092	-				-1.0
2,384,092	-				+0.4
2,384,092	-				+1.7
2,384,092	-				+0.2
2,384,092	-				-0.6
2,384,092	-				+1.2
2,384,092	-				-1.5
2,384,092	-				-1.8
2,384,112	+				-0.1
2,384,115	+				-0.1
2,384,116	-				+0.0
2,384,116	-				+1.6
2,384,153	+				+0.4
2,384,256	-				-1.9
2,384,256	-				-0.6
2,384,367	-		Sama_1955	0.12	-1.1
2,384,385	-		Sama_1955	0.13	+0.8
2,384,385	-		Sama_1955	0.13	-1.0
2,384,388	+		Sama_1955	0.13	-0.1
2,384,389	-		Sama_1955	0.13	-1.4
2,384,389	-		Sama_1955	0.13	+0.6
2,384,389	-		Sama_1955	0.13	-1.0
2,384,394	+		Sama_1955	0.13	-1.8
2,384,505	+		Sama_1955	0.17	-0.2
2,384,518	+		Sama_1955	0.18	-2.2
2,384,559	+		Sama_1955	0.19	-2.1
2,384,560	-		Sama_1955	0.20	-1.4
2,384,608	+		Sama_1955	0.21	-0.6
2,384,608	+		Sama_1955	0.21	-0.0
2,384,608	+		Sama_1955	0.21	-0.2
2,384,608	+		Sama_1955	0.21	-0.2
2,384,609	-		Sama_1955	0.21	+1.4
2,384,609	-		Sama_1955	0.21	-0.2
2,384,609	-		Sama_1955	0.21	-1.4
2,384,612	+		Sama_1955	0.22	+2.4
2,384,612	+		Sama_1955	0.22	-1.0
2,384,613	-		Sama_1955	0.22	-1.6
2,384,613	-		Sama_1955	0.22	-0.8
2,384,613	-		Sama_1955	0.22	-1.8
2,384,623	-		Sama_1955	0.22	+1.4
2,384,693	+		Sama_1955	0.25	+0.2
2,384,693	+		Sama_1955	0.25	-0.3
2,384,694	-		Sama_1955	0.25	-0.2
2,384,694	-		Sama_1955	0.25	+1.0
2,384,694	-		Sama_1955	0.25	-0.3
2,384,699	+		Sama_1955	0.25	-0.7
2,384,699	+		Sama_1955	0.25	+1.4
2,384,700	-		Sama_1955	0.25	+0.4
2,384,700	-		Sama_1955	0.25	-2.1
2,384,700	-		Sama_1955	0.25	-1.5
2,384,700	-		Sama_1955	0.25	-2.5
2,384,700	-		Sama_1955	0.25	-0.7
2,384,700	-		Sama_1955	0.25	-2.0
2,384,700	-		Sama_1955	0.25	-0.5
2,384,755	+		Sama_1955	0.27	-0.4
2,384,755	+		Sama_1955	0.27	-0.3
2,384,756	-		Sama_1955	0.27	-0.6
2,384,778	+		Sama_1955	0.28	-0.8
2,384,869	+		Sama_1955	0.32	-1.0
2,384,870	-		Sama_1955	0.32	+0.9
2,384,900	+		Sama_1955	0.33	+3.0
2,384,919	-		Sama_1955	0.34	-0.1
2,384,919	-		Sama_1955	0.34	-0.8
2,384,922	+		Sama_1955	0.34	+0.2
2,384,922	+		Sama_1955	0.34	-0.3
2,384,922	+		Sama_1955	0.34	+0.8