Strain Fitness in Shewanella amazonensis SB2B around Sama_1930

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,356,740	-		Sama_1928	0.55	+0.5
2,356,771	-		Sama_1928	0.58	-0.7
2,356,771	-		Sama_1928	0.58	+0.0
2,356,778	-		Sama_1928	0.59	-1.9
2,356,911	+		Sama_1928	0.72	+0.2
2,356,912	-		Sama_1928	0.72	-1.5
2,356,912	-		Sama_1928	0.72	-0.8
2,356,947	-		Sama_1928	0.76	-1.3
2,357,034	+		Sama_1928	0.85	-2.0
2,357,035	-		Sama_1928	0.85	+1.0
2,357,035	-		Sama_1928	0.85	+1.4
2,357,035	-		Sama_1928	0.85	+0.9
2,357,160	+				+1.1
2,357,168	+				-1.4
2,357,169	-				+1.3
2,357,169	-				-0.7
2,357,210	+				+0.1
2,357,224	+				+0.3
2,357,225	-				+0.7
2,357,235	+				+1.3
2,357,236	-				-0.9
2,357,236	-				-3.5
2,357,241	+				-2.1
2,357,242	-				+1.0
2,357,266	-		Sama_1929	0.14	-0.0
2,357,266	-		Sama_1929	0.14	+1.7
2,357,271	-		Sama_1929	0.16	-2.5
2,357,296	+		Sama_1929	0.25	+1.3
2,357,383	-		Sama_1929	0.56	-1.7
2,357,412	+		Sama_1929	0.67	-0.6
2,357,412	+		Sama_1929	0.67	+1.4
2,357,413	-		Sama_1929	0.67	+0.3
2,357,461	+		Sama_1929	0.84	-2.4
2,357,462	-		Sama_1929	0.85	+0.9
2,357,487	-				+0.1
2,357,499	+				+1.6
2,357,500	-				-0.1
2,357,500	-				+0.4
2,357,500	-				-1.4
2,357,500	-				+0.3
2,357,504	+				+0.3
2,357,504	+				-0.6
2,357,505	-				-1.4
2,357,505	-				+0.3
2,357,505	-				-1.4
2,357,555	+				-1.0
2,357,555	+				-0.0
2,357,555	+				+0.5
2,357,557	+				-1.5
2,357,557	+				-2.9
2,357,557	+				+0.2
2,357,558	-				-2.1
2,357,558	-				-0.3
2,357,571	+				-1.6
2,357,665	+				-0.8
2,357,665	+				-3.4
2,357,665	+				-2.7
2,357,689	+				-0.0
2,357,689	+				-0.1
2,357,689	+				-0.9
2,357,781	+	minC	Sama_1930	0.23	-0.7
2,357,835	+	minC	Sama_1930	0.31	-0.9
2,358,014	+	minC	Sama_1930	0.57	-2.8
2,358,014	+	minC	Sama_1930	0.57	-1.7
2,358,086	-	minC	Sama_1930	0.68	+0.9
2,358,091	+	minC	Sama_1930	0.69	+0.2
2,358,091	+	minC	Sama_1930	0.69	-1.9
2,358,091	+	minC	Sama_1930	0.69	-1.7
2,358,092	-	minC	Sama_1930	0.69	+0.7
2,358,096	-	minC	Sama_1930	0.69	-1.0
2,358,151	+	minC	Sama_1930	0.78	+0.3
2,358,181	+	minC	Sama_1930	0.82	-2.0
2,358,182	-	minC	Sama_1930	0.82	+0.2
2,358,277	-				-1.7
2,358,282	+				-1.1
2,358,282	+				-0.6
2,358,282	+				-3.3
2,358,313	+				-0.3
2,358,342	+				-0.3
2,358,342	+				-1.0
2,358,372	-				-3.4
2,358,376	-				-1.3
2,358,440	+		Sama_1931	0.13	-3.5
2,358,440	+		Sama_1931	0.13	+0.6
2,358,474	+		Sama_1931	0.18	-0.3
2,358,474	+		Sama_1931	0.18	-1.7
2,358,501	-		Sama_1931	0.21	-1.9
2,358,673	+		Sama_1931	0.42	+0.3
2,358,727	+		Sama_1931	0.49	-2.6
2,358,857	-		Sama_1931	0.65	-1.0
2,358,875	-		Sama_1931	0.67	-1.7
2,358,977	+		Sama_1931	0.80	-1.9
2,358,981	+		Sama_1931	0.80	-1.3
2,358,981	+		Sama_1931	0.80	-2.9
2,358,982	-		Sama_1931	0.80	-0.6
2,359,050	+		Sama_1931	0.89	-0.9