Strain Fitness in Shewanella amazonensis SB2B around Sama_1915

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,341,098	+		Sama_1913	0.63	+0.8
2,341,099	-		Sama_1913	0.63	-1.0
2,341,099	-		Sama_1913	0.63	+3.4
2,341,099	-		Sama_1913	0.63	+0.6
2,341,099	-		Sama_1913	0.63	+3.3
2,341,100	+		Sama_1913	0.63	-1.3
2,341,100	+		Sama_1913	0.63	-0.7
2,341,101	-		Sama_1913	0.63	+2.5
2,341,307	+		Sama_1913	0.77	+1.2
2,341,307	+		Sama_1913	0.77	-0.1
2,341,308	-		Sama_1913	0.77	+0.6
2,341,319	-		Sama_1913	0.78	+1.5
2,341,344	+		Sama_1913	0.79	+4.3
2,341,344	+		Sama_1913	0.79	+2.1
2,341,345	-		Sama_1913	0.79	-1.0
2,341,345	-		Sama_1913	0.79	+2.6
2,341,345	-		Sama_1913	0.79	-2.0
2,341,346	+		Sama_1913	0.80	+2.9
2,341,346	+		Sama_1913	0.80	-0.1
2,341,346	+		Sama_1913	0.80	-0.7
2,341,347	-		Sama_1913	0.80	+2.2
2,341,425	+		Sama_1913	0.85	-0.4
2,341,463	+		Sama_1913	0.87	+1.3
2,341,463	+		Sama_1913	0.87	+0.8
2,341,515	+				+2.2
2,341,515	+				-0.9
2,341,515	+				-0.3
2,341,555	-				-0.2
2,341,555	-				+1.6
2,341,611	-				+1.6
2,341,611	-				-0.3
2,341,639	+				-2.2
2,341,640	-				-0.9
2,341,640	-				-0.2
2,341,645	-				+0.0
2,341,722	-				+1.3
2,341,738	-				-1.3
2,341,830	+		Sama_1914	0.26	-0.9
2,341,830	+		Sama_1914	0.26	+1.2
2,341,831	-		Sama_1914	0.26	+1.9
2,341,849	+		Sama_1914	0.31	+1.7
2,341,869	+		Sama_1914	0.37	-0.7
2,341,881	+		Sama_1914	0.40	-1.2
2,341,934	+		Sama_1914	0.56	-0.2
2,341,935	-		Sama_1914	0.56	+0.1
2,341,935	-		Sama_1914	0.56	+2.0
2,341,935	-		Sama_1914	0.56	-0.4
2,341,936	+		Sama_1914	0.56	+2.0
2,341,936	+		Sama_1914	0.56	+0.2
2,341,936	+		Sama_1914	0.56	-2.3
2,341,937	-		Sama_1914	0.56	+0.4
2,341,980	+		Sama_1914	0.69	+1.0
2,341,983	+		Sama_1914	0.70	-1.6
2,341,983	+		Sama_1914	0.70	-2.0
2,342,117	+				+0.0
2,342,130	+				+2.0
2,342,170	+		Sama_1915	0.18	+0.1
2,342,203	+		Sama_1915	0.27	-0.7
2,342,203	+		Sama_1915	0.27	+0.6
2,342,204	-		Sama_1915	0.27	-0.3
2,342,217	+		Sama_1915	0.30	-0.0
2,342,278	+		Sama_1915	0.46	+2.3
2,342,279	-		Sama_1915	0.46	-2.3
2,342,315	-		Sama_1915	0.55	-1.3
2,342,315	-		Sama_1915	0.55	-0.5
2,342,339	+		Sama_1915	0.61	-2.1
2,342,339	+		Sama_1915	0.61	-1.2
2,342,340	-		Sama_1915	0.62	+2.1
2,342,341	+		Sama_1915	0.62	-0.7
2,342,341	+		Sama_1915	0.62	-2.5
2,342,341	+		Sama_1915	0.62	-0.7
2,342,341	+		Sama_1915	0.62	+0.3
2,342,341	+		Sama_1915	0.62	+1.9
2,342,342	-		Sama_1915	0.62	+0.1
2,342,342	-		Sama_1915	0.62	-1.3
2,342,342	-		Sama_1915	0.62	+0.3
2,342,342	-		Sama_1915	0.62	-0.3
2,342,342	-		Sama_1915	0.62	-0.0
2,342,420	-		Sama_1915	0.82	+0.1
2,342,488	+				-0.3
2,342,489	-				+0.7
2,342,595	-				-0.3
2,342,608	-				+0.1
2,342,657	-				-1.0
2,342,685	+				-2.0
2,342,754	+		Sama_1916	0.14	+2.1
2,342,779	-		Sama_1916	0.17	-1.3
2,342,779	-		Sama_1916	0.17	-2.4
2,342,779	-		Sama_1916	0.17	-0.0
2,342,879	-		Sama_1916	0.31	-1.2
2,342,996	-		Sama_1916	0.47	-1.7
2,342,996	-		Sama_1916	0.47	-0.7
2,342,996	-		Sama_1916	0.47	+0.7
2,343,007	-		Sama_1916	0.48	-0.6
2,343,045	+		Sama_1916	0.54	-1.7
2,343,046	-		Sama_1916	0.54	-0.0
2,343,046	-		Sama_1916	0.54	-3.3
2,343,046	-		Sama_1916	0.54	-2.6
2,343,046	-		Sama_1916	0.54	-1.5
2,343,056	+		Sama_1916	0.55	+0.3
2,343,063	-		Sama_1916	0.56	-1.0
2,343,063	-		Sama_1916	0.56	-0.4
2,343,105	-		Sama_1916	0.62	-2.6
2,343,105	-		Sama_1916	0.62	-0.0
2,343,295	+		Sama_1916	0.88	-0.3
2,343,295	+		Sama_1916	0.88	-1.5
2,343,295	+		Sama_1916	0.88	-3.2
2,343,296	-		Sama_1916	0.88	-1.7
2,343,296	-		Sama_1916	0.88	-1.5
2,343,327	+				-1.7
2,343,328	-				-1.4
2,343,372	-				-1.3
2,343,384	-				-1.5