Strain Fitness in Shewanella amazonensis SB2B around Sama_1899

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,315,530	+		Sama_1898	0.14	-2.0
2,315,549	-		Sama_1898	0.16	-0.5
2,315,610	+		Sama_1898	0.22	-1.3
2,315,610	+		Sama_1898	0.22	+0.6
2,315,611	-		Sama_1898	0.22	+0.1
2,315,611	-		Sama_1898	0.22	-1.7
2,315,615	-		Sama_1898	0.22	-2.4
2,315,615	-		Sama_1898	0.22	-0.2
2,315,615	-		Sama_1898	0.22	-2.0
2,315,615	-		Sama_1898	0.22	-1.3
2,315,654	+		Sama_1898	0.26	-0.3
2,315,671	+		Sama_1898	0.28	-1.5
2,315,671	+		Sama_1898	0.28	-1.3
2,315,672	-		Sama_1898	0.28	-1.0
2,315,672	-		Sama_1898	0.28	+0.5
2,315,672	-		Sama_1898	0.28	+1.0
2,315,764	+		Sama_1898	0.37	-0.1
2,315,764	+		Sama_1898	0.37	-0.1
2,315,765	-		Sama_1898	0.37	+1.3
2,315,765	-		Sama_1898	0.37	-0.7
2,315,765	-		Sama_1898	0.37	-2.6
2,315,765	-		Sama_1898	0.37	-2.6
2,315,765	-		Sama_1898	0.37	-1.9
2,315,778	+		Sama_1898	0.38	-0.7
2,315,778	+		Sama_1898	0.38	+0.8
2,315,779	-		Sama_1898	0.38	+1.3
2,315,779	-		Sama_1898	0.38	-2.0
2,315,828	+		Sama_1898	0.43	-0.0
2,315,828	+		Sama_1898	0.43	-2.0
2,315,828	+		Sama_1898	0.43	+1.0
2,315,829	-		Sama_1898	0.43	-1.7
2,315,829	-		Sama_1898	0.43	+0.4
2,315,831	+		Sama_1898	0.43	-1.0
2,315,832	-		Sama_1898	0.43	-0.7
2,315,832	-		Sama_1898	0.43	-1.7
2,315,949	+		Sama_1898	0.55	+0.3
2,316,017	-		Sama_1898	0.61	+1.0
2,316,026	+		Sama_1898	0.62	-0.5
2,316,034	+		Sama_1898	0.63	-1.2
2,316,034	+		Sama_1898	0.63	+0.6
2,316,035	-		Sama_1898	0.63	-0.8
2,316,035	-		Sama_1898	0.63	-0.3
2,316,035	-		Sama_1898	0.63	+2.3
2,316,035	-		Sama_1898	0.63	-0.1
2,316,035	-		Sama_1898	0.63	-2.4
2,316,197	-		Sama_1898	0.79	+1.3
2,316,212	+		Sama_1898	0.80	+0.7
2,316,333	-				-2.0
2,316,333	-				+1.3
2,316,410	+				-1.7
2,316,412	+				+1.6
2,316,412	+				+1.5
2,316,413	-				-1.7
2,316,413	-				-0.0
2,316,413	-				-1.0
2,316,413	-				-1.3
2,316,413	-				+0.5
2,316,450	+				+1.3
2,316,462	+				-0.4
2,316,463	-				+0.0
2,316,500	+				+0.1
2,316,501	-				-0.6
2,316,581	-				+1.8
2,316,581	-				+0.7
2,316,639	+		Sama_1899	0.11	-2.6
2,316,640	-		Sama_1899	0.11	+2.5
2,316,773	-		Sama_1899	0.17	-2.2
2,316,812	+		Sama_1899	0.19	-1.0
2,316,812	+		Sama_1899	0.19	+0.3
2,316,813	-		Sama_1899	0.19	+0.3
2,316,849	+		Sama_1899	0.21	-0.8
2,316,852	+		Sama_1899	0.21	-0.4
2,317,008	+		Sama_1899	0.29	-0.8
2,317,009	-		Sama_1899	0.29	-2.2
2,317,009	-		Sama_1899	0.29	-1.0
2,317,050	+		Sama_1899	0.31	-2.9
2,317,150	+		Sama_1899	0.36	-0.2
2,317,150	+		Sama_1899	0.36	-0.5
2,317,151	-		Sama_1899	0.36	-1.5
2,317,151	-		Sama_1899	0.36	-1.2
2,317,397	+		Sama_1899	0.47	+0.0
2,317,398	-		Sama_1899	0.47	-1.6
2,317,398	-		Sama_1899	0.47	-2.0
2,317,542	+		Sama_1899	0.54	-1.0
2,317,542	+		Sama_1899	0.54	+1.5
2,317,542	+		Sama_1899	0.54	-2.0
2,317,599	+		Sama_1899	0.57	-0.7
2,317,600	-		Sama_1899	0.57	+0.3
2,317,600	-		Sama_1899	0.57	+0.1
2,317,610	-		Sama_1899	0.58	-0.5
2,317,653	-		Sama_1899	0.60	-2.0
2,317,674	+		Sama_1899	0.61	-1.6
2,317,674	+		Sama_1899	0.61	-0.7
2,317,697	-		Sama_1899	0.62	+0.3
2,317,734	+		Sama_1899	0.64	-0.6
2,317,734	+		Sama_1899	0.64	-1.3
2,317,759	+		Sama_1899	0.65	+0.1
2,317,792	+		Sama_1899	0.67	-0.5
2,317,804	+		Sama_1899	0.67	-2.2
2,317,805	-		Sama_1899	0.67	+0.8
2,317,805	-		Sama_1899	0.67	+0.3
2,317,805	-		Sama_1899	0.67	-0.8
2,317,805	-		Sama_1899	0.67	+0.0
2,317,810	+		Sama_1899	0.67	+2.7
2,317,810	+		Sama_1899	0.67	+0.6
2,317,810	+		Sama_1899	0.67	+0.6
2,317,810	+		Sama_1899	0.67	-0.8
2,317,811	-		Sama_1899	0.67	-2.3
2,317,811	-		Sama_1899	0.67	-0.9
2,317,811	-		Sama_1899	0.67	+0.5
2,317,811	-		Sama_1899	0.67	+0.1
2,317,811	-		Sama_1899	0.67	+2.0
2,317,811	-		Sama_1899	0.67	-1.2
2,317,811	-		Sama_1899	0.67	+1.7
2,317,812	+		Sama_1899	0.67	-1.5
2,317,812	+		Sama_1899	0.67	+1.5
2,317,812	+		Sama_1899	0.67	-0.4
2,317,813	-		Sama_1899	0.68	-1.0
2,317,813	-		Sama_1899	0.68	+0.5
2,317,883	+		Sama_1899	0.71	-2.4
2,317,884	-		Sama_1899	0.71	-1.3
2,317,940	-		Sama_1899	0.74	-1.5
2,317,940	-		Sama_1899	0.74	-0.7
2,317,968	+		Sama_1899	0.75	+1.7
2,317,969	-		Sama_1899	0.75	-0.1
2,318,020	-		Sama_1899	0.78	-1.4
2,318,020	-		Sama_1899	0.78	-0.7
2,318,039	+		Sama_1899	0.78	+3.9
2,318,039	+		Sama_1899	0.78	-0.8
2,318,039	+		Sama_1899	0.78	-2.6
2,318,039	+		Sama_1899	0.78	-0.9
2,318,039	+		Sama_1899	0.78	+0.0
2,318,040	-		Sama_1899	0.79	-0.7
2,318,083	-		Sama_1899	0.81	-0.7
2,318,083	-		Sama_1899	0.81	+0.6
2,318,083	-		Sama_1899	0.81	-1.0
2,318,117	+		Sama_1899	0.82	+1.9
2,318,129	+		Sama_1899	0.83	-0.7
2,318,138	+		Sama_1899	0.83	+1.1
2,318,138	+		Sama_1899	0.83	-3.0
2,318,138	+		Sama_1899	0.83	-2.3
2,318,138	+		Sama_1899	0.83	-0.2
2,318,371	+				+0.3
2,318,371	+				+1.2
2,318,371	+				-1.7
2,318,372	-				+0.7
2,318,372	-				-2.4
2,318,372	-				-1.5
2,318,372	-				-0.8
2,318,373	+				-2.9
2,318,373	+				+1.0
2,318,373	+				-0.6
2,318,373	+				+0.9
2,318,374	-				+0.5
2,318,374	-				-1.0
2,318,374	-				+1.8
2,318,374	-				+0.5
2,318,374	-				+0.1
2,318,374	-				-2.0
2,318,496	+				-2.4
2,318,534	+				-0.8
2,318,573	+				+1.7