Strain Fitness in Shewanella amazonensis SB2B around Sama_1822

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,218,364	-		Sama_1821	0.60	-2.9
2,218,389	+		Sama_1821	0.62	-1.3
2,218,393	+		Sama_1821	0.62	-0.1
2,218,508	+		Sama_1821	0.67	+0.1
2,218,509	-		Sama_1821	0.67	+1.6
2,218,556	+		Sama_1821	0.69	+0.2
2,218,586	+		Sama_1821	0.71	-1.8
2,218,612	+		Sama_1821	0.72	-0.2
2,218,613	-		Sama_1821	0.72	-1.5
2,218,621	-		Sama_1821	0.72	-1.3
2,218,621	-		Sama_1821	0.72	+1.2
2,218,717	-		Sama_1821	0.77	-1.1
2,218,717	-		Sama_1821	0.77	-0.3
2,218,772	-		Sama_1821	0.79	-1.8
2,218,802	+		Sama_1821	0.81	+1.2
2,218,802	+		Sama_1821	0.81	-1.3
2,218,802	+		Sama_1821	0.81	-0.3
2,218,803	-		Sama_1821	0.81	-0.8
2,218,803	-		Sama_1821	0.81	-3.9
2,218,803	-		Sama_1821	0.81	-1.3
2,218,803	-		Sama_1821	0.81	-3.0
2,218,803	-		Sama_1821	0.81	-0.2
2,218,889	-		Sama_1821	0.85	-2.9
2,218,889	-		Sama_1821	0.85	-2.3
2,218,894	-		Sama_1821	0.85	-1.9
2,218,894	-		Sama_1821	0.85	-0.9
2,218,894	-		Sama_1821	0.85	-2.7
2,218,949	-		Sama_1821	0.87	-1.5
2,218,978	-		Sama_1821	0.89	-0.3
2,218,978	-		Sama_1821	0.89	+0.7
2,218,978	-		Sama_1821	0.89	-0.6
2,219,186	+				-1.1
2,219,213	-				-2.2
2,219,286	-				+1.0
2,219,315	-				-1.8
2,219,315	-				+0.1
2,219,335	-				+3.8
2,219,348	-				+2.6
2,219,448	-		Sama_1822	0.31	-0.3
2,219,509	+		Sama_1822	0.52	-1.9
2,219,549	-		Sama_1822	0.66	+3.4
2,219,562	-		Sama_1822	0.70	+4.0
2,219,562	-		Sama_1822	0.70	+5.8
2,219,565	-		Sama_1822	0.71	+1.8
2,219,573	+		Sama_1822	0.74	-1.1
2,219,573	+		Sama_1822	0.74	-0.7
2,219,573	+		Sama_1822	0.74	+0.4
2,219,574	-		Sama_1822	0.74	+4.2
2,219,574	-		Sama_1822	0.74	+1.9
2,219,574	-		Sama_1822	0.74	+2.1
2,219,575	+		Sama_1822	0.75	-0.3
2,219,600	-		Sama_1822	0.83	+3.8
2,219,673	+				+1.8
2,219,673	+				-0.9
2,219,823	-		Sama_1823	0.16	+2.9
2,219,823	-		Sama_1823	0.16	+2.9
2,219,823	-		Sama_1823	0.16	-1.1
2,219,823	-		Sama_1823	0.16	+2.4
2,219,863	+		Sama_1823	0.24	-2.5
2,219,863	+		Sama_1823	0.24	-1.8
2,219,864	-		Sama_1823	0.24	+0.5
2,219,864	-		Sama_1823	0.24	+1.7
2,219,864	-		Sama_1823	0.24	+0.2
2,219,866	+		Sama_1823	0.24	-2.1
2,219,894	+		Sama_1823	0.30	+0.2
2,219,912	+		Sama_1823	0.33	+0.0
2,219,967	+		Sama_1823	0.44	-1.6
2,220,017	+		Sama_1823	0.54	-1.9
2,220,018	-		Sama_1823	0.54	-2.2
2,220,018	-		Sama_1823	0.54	-2.7
2,220,018	-		Sama_1823	0.54	-2.7
2,220,217	-				-1.5
2,220,307	+				-0.9
2,220,314	-				+0.2
2,220,359	+				+0.2
2,220,485	+				-0.6