Strain Fitness in Shewanella amazonensis SB2B around Sama_1797

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,189,249	+		Sama_1796	0.63	-0.9
2,189,261	+		Sama_1796	0.63	-0.2
2,189,262	-		Sama_1796	0.64	-0.4
2,189,269	-		Sama_1796	0.64	+2.2
2,189,311	-		Sama_1796	0.66	+0.8
2,189,469	+		Sama_1796	0.72	+0.6
2,189,482	-		Sama_1796	0.73	+1.1
2,189,554	+		Sama_1796	0.76	-2.1
2,189,554	+		Sama_1796	0.76	-1.1
2,189,555	-		Sama_1796	0.76	+3.2
2,189,555	-		Sama_1796	0.76	+2.3
2,189,679	+		Sama_1796	0.81	+0.6
2,189,721	-		Sama_1796	0.83	+1.6
2,189,721	-		Sama_1796	0.83	+2.8
2,189,729	+		Sama_1796	0.83	-2.1
2,189,729	+		Sama_1796	0.83	+1.0
2,189,729	+		Sama_1796	0.83	-1.9
2,189,802	+		Sama_1796	0.86	+3.2
2,189,803	-		Sama_1796	0.86	+0.2
2,189,820	+		Sama_1796	0.87	-0.0
2,189,904	+				-0.0
2,189,905	-				-1.6
2,189,905	-				+3.7
2,189,949	+				+0.8
2,189,950	-				+2.0
2,189,972	+				-0.9
2,189,973	-				+0.2
2,190,005	-				+0.2
2,190,009	+				-0.1
2,190,009	+				+0.6
2,190,009	+				+3.0
2,190,010	-				+0.6
2,190,010	-				+3.7
2,190,010	-				+0.8
2,190,047	+				+0.5
2,190,052	+				+0.6
2,190,052	+				-0.9
2,190,052	+				+0.4
2,190,065	+				+2.8
2,190,113	+				+2.8
2,190,123	-				+2.6
2,190,134	+				+0.6
2,190,134	+				+0.2
2,190,134	+				-0.4
2,190,134	+				+1.2
2,190,134	+				+1.4
2,190,135	-				+1.1
2,190,141	+				+1.2
2,190,141	+				+2.1
2,190,141	+				-0.8
2,190,142	-				-0.5
2,190,142	-				-0.6
2,190,229	+		Sama_1797	0.50	+1.0
2,190,229	+		Sama_1797	0.50	+2.8
2,190,230	-		Sama_1797	0.50	+0.8
2,190,273	-		Sama_1797	0.72	+3.2
2,190,488	+		Sama_1798	0.23	+2.1
2,190,488	+		Sama_1798	0.23	-1.8
2,190,488	+		Sama_1798	0.23	+1.4
2,190,494	-		Sama_1798	0.24	+0.8
2,190,512	+		Sama_1798	0.26	-1.4
2,190,512	+		Sama_1798	0.26	+1.2
2,190,513	-		Sama_1798	0.27	+0.2
2,190,513	-		Sama_1798	0.27	+1.5
2,190,555	+		Sama_1798	0.33	+2.9
2,190,556	-		Sama_1798	0.33	-0.4
2,190,583	+		Sama_1798	0.37	+2.6
2,190,584	-		Sama_1798	0.37	+2.5
2,190,635	+		Sama_1798	0.44	+3.4
2,190,635	+		Sama_1798	0.44	+2.1
2,190,635	+		Sama_1798	0.44	+0.6
2,190,636	-		Sama_1798	0.44	+1.2
2,190,636	-		Sama_1798	0.44	+5.4
2,190,636	-		Sama_1798	0.44	+1.2
2,190,636	-		Sama_1798	0.44	+0.7
2,190,636	-		Sama_1798	0.44	+2.4
2,190,636	-		Sama_1798	0.44	+0.6
2,190,699	+		Sama_1798	0.53	+0.6
2,190,700	-		Sama_1798	0.54	+1.4
2,190,768	+		Sama_1798	0.63	+4.7
2,190,797	+		Sama_1798	0.68	+0.0
2,190,850	+		Sama_1798	0.75	+3.4
2,190,851	-		Sama_1798	0.75	+2.2
2,190,851	-		Sama_1798	0.75	+1.2
2,190,930	+		Sama_1798	0.87	-0.4
2,190,930	+		Sama_1798	0.87	+0.0
2,190,930	+		Sama_1798	0.87	-0.8
2,190,930	+		Sama_1798	0.87	+2.4
2,190,972	+				-1.4
2,190,973	-				+3.2
2,190,993	+				+0.5
2,190,993	+				+0.1
2,190,995	+				-1.9
2,190,995	+				+2.6
2,190,995	+				+1.2
2,190,995	+				-1.5
2,190,995	+				-0.3
2,190,996	-				+0.4
2,190,996	-				+1.0
2,190,996	-				+0.1
2,190,996	-				+3.1
2,190,996	-				-0.0
2,190,996	-				+1.2
2,190,996	-				-1.9
2,190,996	-				-0.4
2,190,996	-				+1.6
2,190,996	-				-1.1
2,190,997	+				+2.8
2,190,997	+				+2.0
2,190,997	+				+0.6
2,190,997	+				-1.1
2,190,997	+				+0.2
2,190,997	+				+2.8
2,190,997	+				+0.3
2,190,997	+				+2.5
2,190,998	-				+3.1
2,190,998	-				-1.9
2,190,998	-				+1.2
2,190,998	-				+2.5
2,190,998	-				+1.8
2,191,049	+				-0.0
2,191,054	-				-1.8
2,191,147	-				-3.5
2,191,164	+		Sama_1799	0.11	+0.2
2,191,165	-		Sama_1799	0.12	+0.5
2,191,206	+		Sama_1799	0.17	+0.2
2,191,209	+		Sama_1799	0.17	-0.4
2,191,212	+		Sama_1799	0.18	-0.6
2,191,305	+		Sama_1799	0.30	-1.6
2,191,313	-		Sama_1799	0.31	-2.1