Strain Fitness in Shewanella amazonensis SB2B around Sama_1769

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,162,733	+				+0.6
2,162,778	-				-0.6
2,163,300	-		Sama_1769	0.49	-0.4
2,163,325	-		Sama_1769	0.51	+2.6
2,163,480	-		Sama_1769	0.68	-1.1
2,163,881	-				-1.2
2,163,885	+				-1.8
2,163,885	+				+0.2
2,163,886	-				+0.4
2,163,886	-				-1.1
2,163,894	+				+2.2
2,163,895	-				+1.1
2,163,962	+				-0.4
2,163,975	+				+1.2
2,163,999	+				+1.0
2,164,000	-				-0.1
2,164,010	-				+1.8
2,164,031	-				-2.4
2,164,102	-		Sama_1770	0.12	-1.6
2,164,128	+		Sama_1770	0.14	-1.2
2,164,128	+		Sama_1770	0.14	+1.9
2,164,166	-		Sama_1770	0.17	-2.5
2,164,166	-		Sama_1770	0.17	+0.6
2,164,201	-		Sama_1770	0.20	+0.8
2,164,201	-		Sama_1770	0.20	+1.2
2,164,224	+		Sama_1770	0.22	+0.4
2,164,224	+		Sama_1770	0.22	+0.2
2,164,225	-		Sama_1770	0.23	-1.1
2,164,225	-		Sama_1770	0.23	-0.8
2,164,225	-		Sama_1770	0.23	-0.8
2,164,225	-		Sama_1770	0.23	+0.7
2,164,247	-		Sama_1770	0.25	-0.4
2,164,247	-		Sama_1770	0.25	-1.7
2,164,287	-		Sama_1770	0.28	+2.2
2,164,287	-		Sama_1770	0.28	-1.4
2,164,366	+		Sama_1770	0.35	+0.6
2,164,367	-		Sama_1770	0.35	-0.8
2,164,401	-		Sama_1770	0.38	-1.6
2,164,401	-		Sama_1770	0.38	+1.0
2,164,432	-		Sama_1770	0.41	+0.1
2,164,432	-		Sama_1770	0.41	+1.8
2,164,434	-		Sama_1770	0.41	+1.2
2,164,520	-		Sama_1770	0.49	+1.7
2,164,547	-		Sama_1770	0.51	+2.3
2,164,547	-		Sama_1770	0.51	+1.7
2,164,551	-		Sama_1770	0.52	+0.2
2,164,551	-		Sama_1770	0.52	+1.6
2,164,551	-		Sama_1770	0.52	+0.6
2,164,551	-		Sama_1770	0.52	+1.8
2,164,616	-		Sama_1770	0.58	+0.1
2,164,664	-		Sama_1770	0.62	+1.1
2,164,738	-		Sama_1770	0.69	+1.8
2,164,764	-		Sama_1770	0.71	+0.5