Strain Fitness in Shewanella amazonensis SB2B around Sama_1759

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,151,064	+		Sama_1758	0.45	+0.1
2,151,067	+		Sama_1758	0.45	-1.8
2,151,067	+		Sama_1758	0.45	+0.2
2,151,067	+		Sama_1758	0.45	+1.4
2,151,067	+		Sama_1758	0.45	-2.0
2,151,067	+		Sama_1758	0.45	+0.8
2,151,068	-		Sama_1758	0.46	-0.2
2,151,068	-		Sama_1758	0.46	-1.8
2,151,068	-		Sama_1758	0.46	+4.0
2,151,119	+		Sama_1758	0.49	+2.9
2,151,119	+		Sama_1758	0.49	+0.5
2,151,119	+		Sama_1758	0.49	-1.8
2,151,119	+		Sama_1758	0.49	-1.3
2,151,171	+		Sama_1758	0.52	-1.6
2,151,171	+		Sama_1758	0.52	+1.2
2,151,171	+		Sama_1758	0.52	-1.1
2,151,172	-		Sama_1758	0.52	-0.5
2,151,172	-		Sama_1758	0.52	-1.5
2,151,172	-		Sama_1758	0.52	-1.1
2,151,199	+		Sama_1758	0.54	-2.1
2,151,229	-		Sama_1758	0.55	-2.4
2,151,233	+		Sama_1758	0.56	+0.7
2,151,268	+		Sama_1758	0.58	-0.2
2,151,268	+		Sama_1758	0.58	+0.2
2,151,269	-		Sama_1758	0.58	-3.3
2,151,294	+		Sama_1758	0.59	+0.2
2,151,294	+		Sama_1758	0.59	-0.7
2,151,294	+		Sama_1758	0.59	+0.4
2,151,294	+		Sama_1758	0.59	-2.4
2,151,402	+		Sama_1758	0.66	-0.4
2,151,407	+		Sama_1758	0.66	+0.6
2,151,408	-		Sama_1758	0.67	-0.8
2,151,450	+		Sama_1758	0.69	+0.7
2,151,451	-		Sama_1758	0.69	-2.0
2,151,454	-		Sama_1758	0.69	+0.8
2,151,471	+		Sama_1758	0.70	-0.8
2,151,471	+		Sama_1758	0.70	+3.0
2,151,471	+		Sama_1758	0.70	-0.0
2,151,471	+		Sama_1758	0.70	+3.0
2,151,471	+		Sama_1758	0.70	+0.1
2,151,471	+		Sama_1758	0.70	+1.2
2,151,472	-		Sama_1758	0.71	-1.1
2,151,475	+		Sama_1758	0.71	-0.5
2,151,475	+		Sama_1758	0.71	-1.8
2,151,502	-		Sama_1758	0.72	-2.6
2,151,567	+		Sama_1758	0.76	-0.7
2,151,567	+		Sama_1758	0.76	-2.1
2,151,567	+		Sama_1758	0.76	-1.4
2,151,572	-		Sama_1758	0.77	-2.0
2,151,589	+		Sama_1758	0.78	-0.1
2,151,598	+		Sama_1758	0.78	+1.0
2,151,598	+		Sama_1758	0.78	-0.5
2,151,598	+		Sama_1758	0.78	-0.0
2,151,598	+		Sama_1758	0.78	-0.1
2,151,618	+		Sama_1758	0.80	+0.8
2,151,618	+		Sama_1758	0.80	-2.6
2,151,619	-		Sama_1758	0.80	+2.3
2,151,621	+		Sama_1758	0.80	+3.3
2,151,622	-		Sama_1758	0.80	-0.3
2,151,664	+		Sama_1758	0.82	-0.6
2,151,664	+		Sama_1758	0.82	+1.7
2,151,664	+		Sama_1758	0.82	+1.4
2,151,664	+		Sama_1758	0.82	+2.3
2,151,664	+		Sama_1758	0.82	-0.6
2,151,664	+		Sama_1758	0.82	+3.0
2,151,664	+		Sama_1758	0.82	+1.2
2,151,664	+		Sama_1758	0.82	+0.6
2,151,664	+		Sama_1758	0.82	-0.4
2,151,664	+		Sama_1758	0.82	-0.9
2,151,664	+		Sama_1758	0.82	+1.0
2,151,665	-		Sama_1758	0.82	-0.0
2,151,665	-		Sama_1758	0.82	-0.4
2,151,665	-		Sama_1758	0.82	+3.1
2,151,665	-		Sama_1758	0.82	-1.1
2,151,666	+		Sama_1758	0.82	-0.3
2,151,706	+		Sama_1758	0.85	+0.2
2,151,706	+		Sama_1758	0.85	-1.1
2,151,725	-		Sama_1758	0.86	-1.1
2,151,854	+				-2.9
2,151,854	+				-0.5
2,151,855	-				-0.8
2,151,855	-				-1.1
2,151,896	+				-1.0
2,151,896	+				+0.5
2,151,896	+				+0.2
2,151,896	+				-2.9
2,151,896	+				+1.0
2,151,896	+				-1.4
2,151,896	+				-2.0
2,151,897	-				-2.9
2,151,897	-				+0.0
2,151,897	-				+0.8
2,151,897	-				-0.0
2,151,897	-				+0.9
2,151,897	-				+0.4
2,151,898	+				+1.1
2,151,898	+				+0.0
2,151,898	+				-1.6
2,151,898	+				+1.9
2,151,898	+				-2.4
2,151,945	-				+0.9
2,152,027	+				-1.8
2,152,028	-				+0.1
2,152,028	-				-0.4
2,152,028	-				-0.5
2,152,130	-		Sama_1759	0.13	+0.1
2,152,143	+		Sama_1759	0.14	+0.9
2,152,155	+		Sama_1759	0.15	+0.6
2,152,161	+		Sama_1759	0.16	+1.2
2,152,161	+		Sama_1759	0.16	+1.5
2,152,164	+		Sama_1759	0.16	+1.4
2,152,164	+		Sama_1759	0.16	-1.6
2,152,255	-		Sama_1759	0.25	+1.9
2,152,255	-		Sama_1759	0.25	+0.2
2,152,274	+		Sama_1759	0.26	+0.6
2,152,275	-		Sama_1759	0.26	-0.4
2,152,275	-		Sama_1759	0.26	+0.2
2,152,288	+		Sama_1759	0.28	-1.1
2,152,333	+		Sama_1759	0.32	-0.5
2,152,387	+		Sama_1759	0.37	-0.7
2,152,387	+		Sama_1759	0.37	+0.5
2,152,480	+		Sama_1759	0.46	-0.8
2,152,480	+		Sama_1759	0.46	+1.6
2,152,481	-		Sama_1759	0.46	-0.5
2,152,541	-		Sama_1759	0.51	-2.8
2,152,548	+		Sama_1759	0.52	+0.3
2,152,570	+		Sama_1759	0.54	+0.5
2,152,643	-		Sama_1759	0.61	-1.7
2,152,691	+		Sama_1759	0.65	+0.4
2,152,743	+		Sama_1759	0.70	-0.8
2,152,743	+		Sama_1759	0.70	+0.8
2,152,743	+		Sama_1759	0.70	+0.9
2,152,743	+		Sama_1759	0.70	+0.5
2,152,743	+		Sama_1759	0.70	-0.5
2,152,743	+		Sama_1759	0.70	+0.7
2,152,743	+		Sama_1759	0.70	+1.0
2,152,744	-		Sama_1759	0.70	-0.6
2,152,744	-		Sama_1759	0.70	-1.2
2,152,933	+		Sama_1759	0.88	+1.7
2,152,933	+		Sama_1759	0.88	+2.5
2,153,181	-				+0.9
2,153,199	-				-2.9
2,153,199	-				+2.2
2,153,318	-				-2.0
2,153,348	+				-1.8
2,153,348	+				+1.1
2,153,349	-				+0.4
2,153,349	-				-0.0
2,153,446	+		Sama_1760	0.12	+0.1
2,153,446	+		Sama_1760	0.12	-1.8
2,153,447	-		Sama_1760	0.12	-0.4
2,153,561	-		Sama_1760	0.16	-0.3
2,153,569	+		Sama_1760	0.16	-2.3
2,153,569	+		Sama_1760	0.16	-0.9
2,153,569	+		Sama_1760	0.16	-0.9
2,153,569	+		Sama_1760	0.16	+0.2
2,153,570	-		Sama_1760	0.16	+0.3
2,153,570	-		Sama_1760	0.16	-0.2
2,153,570	-		Sama_1760	0.16	-0.7
2,153,641	-		Sama_1760	0.19	-0.4
2,153,718	-		Sama_1760	0.21	-0.6
2,153,770	-		Sama_1760	0.23	+0.3
2,153,912	+		Sama_1760	0.29	+0.5
2,153,912	+		Sama_1760	0.29	+0.1
2,153,912	+		Sama_1760	0.29	-2.0
2,153,912	+		Sama_1760	0.29	+1.7
2,153,912	+		Sama_1760	0.29	-0.4
2,153,913	-		Sama_1760	0.29	+0.7
2,153,913	-		Sama_1760	0.29	-2.4
2,153,941	+		Sama_1760	0.30	-3.0
2,153,941	+		Sama_1760	0.30	-0.8
2,153,942	-		Sama_1760	0.30	+1.0
2,153,942	-		Sama_1760	0.30	+0.2
2,153,961	-		Sama_1760	0.30	-1.8
2,154,042	+		Sama_1760	0.33	+2.5