Strain Fitness in Shewanella amazonensis SB2B around Sama_1751

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,140,668	+		Sama_1749	0.80	+0.2
2,140,668	+		Sama_1749	0.80	-1.1
2,140,713	+		Sama_1749	0.82	+0.1
2,140,713	+		Sama_1749	0.82	+0.2
2,140,713	+		Sama_1749	0.82	+1.9
2,140,713	+		Sama_1749	0.82	-0.3
2,140,714	-		Sama_1749	0.82	-0.8
2,140,714	-		Sama_1749	0.82	-0.4
2,140,746	+		Sama_1749	0.84	+0.8
2,140,747	-		Sama_1749	0.84	+1.2
2,140,747	-		Sama_1749	0.84	-1.9
2,140,791	-		Sama_1749	0.86	-2.3
2,141,052	+				+1.2
2,141,053	-				-0.1
2,141,107	+				-0.6
2,141,107	+				-1.8
2,141,107	+				-0.2
2,141,108	-				+1.4
2,141,108	-				+0.2
2,141,108	-				-0.3
2,141,108	-				-0.2
2,141,136	+				-2.0
2,141,145	+				-0.4
2,141,165	+				+0.9
2,141,165	+				-1.6
2,141,166	-				+1.0
2,141,166	-				-1.1
2,141,206	+				-2.0
2,141,206	+				-2.5
2,141,208	+				-0.1
2,141,209	-				+0.2
2,141,209	-				-0.6
2,141,217	+				+1.2
2,141,225	+				+3.8
2,141,226	-				+0.2
2,141,229	+				+1.9
2,141,229	+				+1.9
2,141,229	+				+0.4
2,141,241	+				+2.2
2,141,242	-				-2.7
2,141,401	+		Sama_1750	0.48	+0.2
2,141,474	-		Sama_1750	0.70	-0.4
2,141,593	+				+0.2
2,141,594	-				+2.0
2,141,594	-				-1.5
2,141,594	-				+0.7
2,141,623	+				+0.7
2,141,624	-				-1.0
2,141,624	-				+2.3
2,141,625	+				-0.1
2,141,718	+				-1.9
2,141,728	+				-0.1
2,141,771	+		Sama_1751	0.14	+2.9
2,141,771	+		Sama_1751	0.14	+1.6
2,141,771	+		Sama_1751	0.14	-1.1
2,141,771	+		Sama_1751	0.14	-2.1
2,141,772	-		Sama_1751	0.14	+2.3
2,141,772	-		Sama_1751	0.14	+1.5
2,141,772	-		Sama_1751	0.14	+0.6
2,141,772	-		Sama_1751	0.14	+0.4
2,141,775	-		Sama_1751	0.15	-3.4
2,141,820	+		Sama_1751	0.20	+1.0
2,141,821	-		Sama_1751	0.20	+0.2
2,141,821	-		Sama_1751	0.20	+1.3
2,141,855	-		Sama_1751	0.23	-0.8
2,141,864	+		Sama_1751	0.24	+0.6
2,141,998	+		Sama_1751	0.39	-0.5
2,142,023	+		Sama_1751	0.42	-1.4
2,142,024	-		Sama_1751	0.42	-2.4
2,142,035	+		Sama_1751	0.43	-0.0
2,142,220	+		Sama_1751	0.63	+1.4
2,142,221	-		Sama_1751	0.64	-0.2
2,142,315	+		Sama_1751	0.74	-0.0
2,142,334	+		Sama_1751	0.76	+0.5
2,142,334	+		Sama_1751	0.76	-1.8
2,142,336	+		Sama_1751	0.76	+1.7
2,142,336	+		Sama_1751	0.76	+0.6
2,142,336	+		Sama_1751	0.76	-1.4
2,142,336	+		Sama_1751	0.76	-1.1
2,142,337	-		Sama_1751	0.76	+1.4
2,142,337	-		Sama_1751	0.76	+2.6
2,142,337	-		Sama_1751	0.76	-0.2
2,142,496	+				-0.0
2,142,496	+				+1.9
2,142,497	-				+1.1
2,142,599	+				+1.2
2,142,599	+				-2.2
2,142,600	-				-0.4
2,142,651	+				-0.6
2,142,651	+				-1.4
2,142,651	+				-1.0
2,142,652	-				-1.4
2,142,652	-				+1.4
2,142,668	-				-1.8
2,142,702	+				+0.9
2,142,712	+				-2.8
2,142,713	-				-0.1
2,142,713	-				-1.5
2,142,737	+				+0.3
2,142,750	-				-1.4
2,142,755	+				+1.7
2,142,755	+				-0.7
2,142,766	-				-2.1
2,142,775	+				-1.6
2,142,776	-				-1.6
2,142,780	+				+1.4
2,142,780	+				-0.8
2,142,781	-				-0.1
2,142,781	-				+2.3
2,142,781	-				+0.7
2,142,781	-				+0.2
2,142,781	-				-0.4
2,142,781	-				+1.4
2,142,781	-				+2.0
2,142,784	+				+1.0
2,142,784	+				-0.1
2,142,785	-				-0.5
2,142,785	-				-1.9
2,142,785	-				-1.0
2,142,786	+				+1.9
2,142,787	-				-3.0
2,142,802	+				-2.0
2,142,942	+				+0.1
2,143,007	-				+1.2
2,143,025	-				+0.2
2,143,207	-		Sama_1752	0.15	+0.6
2,143,268	+		Sama_1752	0.18	+3.5
2,143,269	-		Sama_1752	0.18	-3.0
2,143,269	-		Sama_1752	0.18	-0.4
2,143,269	-		Sama_1752	0.18	-0.3
2,143,316	+		Sama_1752	0.21	-2.1
2,143,317	-		Sama_1752	0.21	+3.8
2,143,317	-		Sama_1752	0.21	+0.8
2,143,317	-		Sama_1752	0.21	+0.7
2,143,353	-		Sama_1752	0.24	-1.1
2,143,368	+		Sama_1752	0.25	-1.6
2,143,368	+		Sama_1752	0.25	-2.4
2,143,369	-		Sama_1752	0.25	-1.3
2,143,374	+		Sama_1752	0.25	+0.1
2,143,408	-		Sama_1752	0.27	-1.5
2,143,419	+		Sama_1752	0.28	-1.6
2,143,459	+		Sama_1752	0.30	-0.4
2,143,460	-		Sama_1752	0.30	+1.3
2,143,484	+		Sama_1752	0.32	-0.8
2,143,508	+		Sama_1752	0.33	-1.6
2,143,509	-		Sama_1752	0.33	-2.6
2,143,527	+		Sama_1752	0.35	+0.2
2,143,530	+		Sama_1752	0.35	-1.4
2,143,530	+		Sama_1752	0.35	-1.5
2,143,531	-		Sama_1752	0.35	+0.6
2,143,534	-		Sama_1752	0.35	+0.6
2,143,534	-		Sama_1752	0.35	+0.2