Strain Fitness in Shewanella amazonensis SB2B around Sama_1633

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,998,853	+		Sama_1632	0.70	-0.8
1,998,901	+		Sama_1632	0.73	+3.3
1,998,962	+		Sama_1632	0.76	-1.3
1,999,106	+		Sama_1632	0.83	+2.5
1,999,106	+		Sama_1632	0.83	-1.0
1,999,106	+		Sama_1632	0.83	-0.8
1,999,106	+		Sama_1632	0.83	-0.8
1,999,106	+		Sama_1632	0.83	-0.4
1,999,107	-		Sama_1632	0.83	+0.6
1,999,107	-		Sama_1632	0.83	+1.2
1,999,107	-		Sama_1632	0.83	-1.0
1,999,107	-		Sama_1632	0.83	+0.1
1,999,107	-		Sama_1632	0.83	-0.0
1,999,107	-		Sama_1632	0.83	+0.8
1,999,133	-		Sama_1632	0.84	+1.9
1,999,144	+		Sama_1632	0.85	+0.7
1,999,144	+		Sama_1632	0.85	-1.4
1,999,144	+		Sama_1632	0.85	+1.0
1,999,207	-		Sama_1632	0.88	-2.0
1,999,221	+		Sama_1632	0.89	-0.1
1,999,222	-		Sama_1632	0.89	+3.4
1,999,279	+				+0.8
1,999,280	-				+0.4
1,999,390	+				+1.2
1,999,390	+				+0.9
1,999,391	-				+0.0
1,999,445	+				+1.6
1,999,445	+				-0.5
1,999,445	+				-0.0
1,999,463	+				+0.1
1,999,531	-				-0.8
1,999,543	+				+0.1
1,999,543	+				-1.1
1,999,544	-				-0.6
1,999,544	-				+0.3
1,999,544	-				-1.6
1,999,544	-				-1.5
1,999,546	+				-2.0
1,999,547	-				+0.5
1,999,610	+				+0.2
1,999,611	-				-1.6
1,999,615	-				+0.3
1,999,615	-				+1.5
1,999,681	-				-0.2
1,999,688	+				+1.2
1,999,689	-				+0.2
1,999,689	-				-2.0
1,999,689	-				-0.4
1,999,702	+				-0.4
1,999,702	+				-1.8
1,999,702	+				-0.2
1,999,703	-				+0.6
1,999,703	-				+0.6
1,999,711	-				+0.1
1,999,711	-				-0.2
1,999,711	-				-3.4
1,999,711	-				+0.7
1,999,720	+				-0.8
1,999,720	+				+0.6
1,999,721	-				+0.6
1,999,721	-				-1.1
1,999,721	-				-1.5
1,999,747	-				-0.2
1,999,747	-				-1.0
1,999,770	+				-1.2
1,999,770	+				+3.4
1,999,770	+				-1.1
1,999,770	+				-1.3
1,999,771	-				-3.2
1,999,771	-				-0.5
1,999,771	-				-0.6
1,999,773	-				-3.4
1,999,773	-				+1.5
1,999,773	-				+1.5
1,999,773	-				-1.6
1,999,831	-				-1.9
1,999,844	+				-3.2
1,999,845	-				-2.5
1,999,845	-				+0.4
1,999,918	+				+2.5
1,999,919	-		Sama_1633	0.10	-2.5
1,999,924	-		Sama_1633	0.11	+2.3
1,999,925	+		Sama_1633	0.11	-1.2
2,000,082	-		Sama_1633	0.28	-1.4
2,000,093	+		Sama_1633	0.29	+1.2
2,000,160	+		Sama_1633	0.36	+0.2
2,000,161	-		Sama_1633	0.37	+2.0
2,000,161	-		Sama_1633	0.37	+0.7
2,000,166	-		Sama_1633	0.37	+1.5
2,000,200	+		Sama_1633	0.41	+0.5
2,000,200	+		Sama_1633	0.41	-1.3
2,000,200	+		Sama_1633	0.41	+2.1
2,000,350	+		Sama_1633	0.57	-1.9
2,000,350	+		Sama_1633	0.57	-0.6
2,000,355	+		Sama_1633	0.58	-1.4
2,000,406	+		Sama_1633	0.63	+0.2
2,000,406	+		Sama_1633	0.63	-0.8
2,000,455	+		Sama_1633	0.69	-2.1
2,000,455	+		Sama_1633	0.69	+0.5
2,000,495	+		Sama_1633	0.73	-0.8
2,000,496	-		Sama_1633	0.73	-2.1
2,000,496	-		Sama_1633	0.73	+0.2
2,000,501	-		Sama_1633	0.74	-0.6
2,000,541	+		Sama_1633	0.78	-0.8
2,000,541	+		Sama_1633	0.78	+2.1
2,000,653	+				+0.8
2,000,659	+				-0.2
2,000,659	+				+2.2
2,000,659	+				-1.5
2,000,659	+				-1.6
2,000,659	+				-0.4
2,000,660	-				+1.6
2,000,660	-				-1.1
2,000,660	-				+0.8
2,000,660	-				-1.0
2,000,678	+				+0.4
2,000,679	-				+1.2
2,000,829	-				+1.2
2,000,829	-				-1.7
2,000,854	+				+0.1
2,000,962	-				+0.7
2,001,093	-				-1.1
2,001,107	+				-1.6
2,001,108	-				-1.9
2,001,109	+				-0.5
2,001,110	-				-0.7
2,001,110	-				-0.5
2,001,110	-				-1.3
2,001,118	+				-0.2
2,001,139	-				-1.4
2,001,222	+		Sama_1634	0.19	-1.8
2,001,222	+		Sama_1634	0.19	+0.6
2,001,222	+		Sama_1634	0.19	-0.4
2,001,222	+		Sama_1634	0.19	+1.2
2,001,284	+		Sama_1634	0.35	-0.6
2,001,284	+		Sama_1634	0.35	-1.6
2,001,346	+		Sama_1634	0.50	-1.2
2,001,384	+		Sama_1634	0.59	+1.3
2,001,403	+		Sama_1634	0.64	+0.7
2,001,407	+		Sama_1634	0.65	+0.9
2,001,407	+		Sama_1634	0.65	-1.4
2,001,446	+		Sama_1634	0.75	+2.2
2,001,450	+		Sama_1634	0.76	+1.5
2,001,450	+		Sama_1634	0.76	-1.1
2,001,648	-				+2.4