Strain Fitness in Shewanella amazonensis SB2B around Sama_1632

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,996,448	+		Sama_1631	0.35	-1.1
1,996,521	-		Sama_1631	0.40	-0.8
1,996,560	+		Sama_1631	0.43	+0.1
1,996,560	+		Sama_1631	0.43	-1.4
1,996,560	+		Sama_1631	0.43	+1.1
1,996,689	-		Sama_1631	0.51	-1.8
1,996,758	+		Sama_1631	0.56	+0.7
1,996,773	-		Sama_1631	0.57	+2.2
1,996,799	+		Sama_1631	0.59	-1.3
1,996,806	+		Sama_1631	0.59	+0.9
1,996,935	+		Sama_1631	0.68	-1.3
1,996,935	+		Sama_1631	0.68	+1.5
1,996,935	+		Sama_1631	0.68	+3.6
1,996,935	+		Sama_1631	0.68	+2.0
1,997,045	+		Sama_1631	0.75	-2.8
1,997,045	+		Sama_1631	0.75	-2.9
1,997,045	+		Sama_1631	0.75	-0.8
1,997,177	+		Sama_1631	0.84	-0.1
1,997,178	-		Sama_1631	0.84	+0.5
1,997,244	+		Sama_1631	0.88	+1.0
1,997,244	+		Sama_1631	0.88	+0.2
1,997,245	-		Sama_1631	0.88	-1.4
1,997,245	-		Sama_1631	0.88	+1.2
1,997,245	-		Sama_1631	0.88	+0.0
1,997,294	+				-3.3
1,997,295	-				+0.4
1,997,415	+				+0.4
1,997,540	-				+1.2
1,997,540	-				-0.9
1,997,577	+				+2.1
1,997,666	+		Sama_1632	0.11	+0.6
1,997,667	-		Sama_1632	0.12	+1.8
1,997,673	-		Sama_1632	0.12	-0.7
1,997,752	+		Sama_1632	0.16	-1.1
1,997,768	-		Sama_1632	0.17	-2.2
1,997,809	+		Sama_1632	0.19	+2.2
1,997,810	-		Sama_1632	0.19	+0.2
1,997,810	-		Sama_1632	0.19	-1.1
1,997,816	+		Sama_1632	0.19	-1.1
1,997,817	-		Sama_1632	0.19	-0.4
1,997,817	-		Sama_1632	0.19	-2.4
1,997,817	-		Sama_1632	0.19	-2.0
1,997,856	-		Sama_1632	0.21	+1.6
1,997,873	+		Sama_1632	0.22	+1.5
1,997,873	+		Sama_1632	0.22	-0.4
1,997,878	-		Sama_1632	0.22	-0.4
1,997,878	-		Sama_1632	0.22	-2.1
1,997,878	-		Sama_1632	0.22	-1.4
1,997,912	+		Sama_1632	0.24	-0.4
1,997,996	+		Sama_1632	0.28	-1.8
1,998,073	+		Sama_1632	0.32	+0.8
1,998,073	+		Sama_1632	0.32	+0.4
1,998,073	+		Sama_1632	0.32	+2.5
1,998,074	-		Sama_1632	0.32	+0.5
1,998,077	+		Sama_1632	0.32	-0.4
1,998,077	+		Sama_1632	0.32	-0.4
1,998,077	+		Sama_1632	0.32	-0.8
1,998,077	+		Sama_1632	0.32	+0.2
1,998,077	+		Sama_1632	0.32	+0.4
1,998,077	+		Sama_1632	0.32	-0.2
1,998,078	-		Sama_1632	0.32	+1.6
1,998,078	-		Sama_1632	0.32	-0.1
1,998,078	-		Sama_1632	0.32	-0.4
1,998,078	-		Sama_1632	0.32	+0.0
1,998,096	+		Sama_1632	0.33	+0.5
1,998,096	+		Sama_1632	0.33	-1.4
1,998,097	-		Sama_1632	0.33	+3.4
1,998,110	-		Sama_1632	0.34	+1.1
1,998,164	-		Sama_1632	0.36	+0.5
1,998,241	+		Sama_1632	0.40	-0.1
1,998,241	+		Sama_1632	0.40	-0.5
1,998,241	+		Sama_1632	0.40	+0.6
1,998,241	+		Sama_1632	0.40	-0.6
1,998,241	+		Sama_1632	0.40	-0.1
1,998,242	-		Sama_1632	0.40	-1.1
1,998,245	-		Sama_1632	0.40	+1.0
1,998,408	+		Sama_1632	0.48	+1.6
1,998,433	+		Sama_1632	0.50	+0.4
1,998,433	+		Sama_1632	0.50	-0.0
1,998,433	+		Sama_1632	0.50	-0.7
1,998,434	-		Sama_1632	0.50	+0.9
1,998,506	-		Sama_1632	0.53	+2.2
1,998,512	+		Sama_1632	0.54	-0.2
1,998,513	-		Sama_1632	0.54	+1.5
1,998,513	-		Sama_1632	0.54	+1.4
1,998,557	-		Sama_1632	0.56	+1.6
1,998,684	+		Sama_1632	0.62	-1.0
1,998,684	+		Sama_1632	0.62	+0.3
1,998,714	-		Sama_1632	0.64	-1.2
1,998,714	-		Sama_1632	0.64	+2.5
1,998,723	-		Sama_1632	0.64	-1.4
1,998,723	-		Sama_1632	0.64	-1.1
1,998,733	+		Sama_1632	0.64	+0.2
1,998,745	+		Sama_1632	0.65	+3.3
1,998,745	+		Sama_1632	0.65	+0.9
1,998,746	-		Sama_1632	0.65	-1.6
1,998,746	-		Sama_1632	0.65	+1.2
1,998,746	-		Sama_1632	0.65	-2.1
1,998,797	-		Sama_1632	0.68	-1.1
1,998,853	+		Sama_1632	0.70	-0.8
1,998,901	+		Sama_1632	0.73	+3.3
1,998,962	+		Sama_1632	0.76	-1.3
1,999,106	+		Sama_1632	0.83	+2.5
1,999,106	+		Sama_1632	0.83	-1.0
1,999,106	+		Sama_1632	0.83	-0.8
1,999,106	+		Sama_1632	0.83	-0.8
1,999,106	+		Sama_1632	0.83	-0.4
1,999,107	-		Sama_1632	0.83	+0.6
1,999,107	-		Sama_1632	0.83	+1.2
1,999,107	-		Sama_1632	0.83	-1.0
1,999,107	-		Sama_1632	0.83	+0.1
1,999,107	-		Sama_1632	0.83	-0.0
1,999,107	-		Sama_1632	0.83	+0.8
1,999,133	-		Sama_1632	0.84	+1.9
1,999,144	+		Sama_1632	0.85	+0.7
1,999,144	+		Sama_1632	0.85	-1.4
1,999,144	+		Sama_1632	0.85	+1.0
1,999,207	-		Sama_1632	0.88	-2.0
1,999,221	+		Sama_1632	0.89	-0.1
1,999,222	-		Sama_1632	0.89	+3.4
1,999,279	+				+0.8
1,999,280	-				+0.4
1,999,390	+				+1.2
1,999,390	+				+0.9
1,999,391	-				+0.0
1,999,445	+				+1.6
1,999,445	+				-0.5
1,999,445	+				-0.0
1,999,463	+				+0.1
1,999,531	-				-0.8
1,999,543	+				+0.1
1,999,543	+				-1.1
1,999,544	-				-0.6
1,999,544	-				+0.3
1,999,544	-				-1.6
1,999,544	-				-1.5
1,999,546	+				-2.0
1,999,547	-				+0.5
1,999,610	+				+0.2
1,999,611	-				-1.6
1,999,615	-				+0.3
1,999,615	-				+1.5
1,999,681	-				-0.2
1,999,688	+				+1.2
1,999,689	-				+0.2
1,999,689	-				-2.0
1,999,689	-				-0.4
1,999,702	+				-0.4
1,999,702	+				-1.8
1,999,702	+				-0.2
1,999,703	-				+0.6
1,999,703	-				+0.6
1,999,711	-				+0.1
1,999,711	-				-0.2
1,999,711	-				-3.4
1,999,711	-				+0.7
1,999,720	+				-0.8
1,999,720	+				+0.6
1,999,721	-				+0.6
1,999,721	-				-1.1
1,999,721	-				-1.5
1,999,747	-				-0.2
1,999,747	-				-1.0
1,999,770	+				-1.2
1,999,770	+				+3.4
1,999,770	+				-1.1
1,999,770	+				-1.3
1,999,771	-				-3.2
1,999,771	-				-0.5
1,999,771	-				-0.6
1,999,773	-				-3.4
1,999,773	-				+1.5
1,999,773	-				+1.5
1,999,773	-				-1.6
1,999,831	-				-1.9
1,999,844	+				-3.2
1,999,845	-				-2.5
1,999,845	-				+0.4
1,999,918	+				+2.5
1,999,919	-		Sama_1633	0.10	-2.5
1,999,924	-		Sama_1633	0.11	+2.3
1,999,925	+		Sama_1633	0.11	-1.2
2,000,082	-		Sama_1633	0.28	-1.4
2,000,093	+		Sama_1633	0.29	+1.2
2,000,160	+		Sama_1633	0.36	+0.2
2,000,161	-		Sama_1633	0.37	+2.0
2,000,161	-		Sama_1633	0.37	+0.7
2,000,166	-		Sama_1633	0.37	+1.5
2,000,200	+		Sama_1633	0.41	+0.5
2,000,200	+		Sama_1633	0.41	-1.3
2,000,200	+		Sama_1633	0.41	+2.1
2,000,350	+		Sama_1633	0.57	-1.9
2,000,350	+		Sama_1633	0.57	-0.6
2,000,355	+		Sama_1633	0.58	-1.4
2,000,406	+		Sama_1633	0.63	+0.2
2,000,406	+		Sama_1633	0.63	-0.8