Strain Fitness in Shewanella amazonensis SB2B around Sama_1598

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,951,012	+		Sama_1597	0.68	+2.4
1,951,066	-		Sama_1597	0.70	-0.9
1,951,105	+		Sama_1597	0.71	-1.9
1,951,105	+		Sama_1597	0.71	-0.6
1,951,106	-		Sama_1597	0.71	-0.3
1,951,197	-		Sama_1597	0.74	+0.7
1,951,211	+		Sama_1597	0.74	-0.7
1,951,211	+		Sama_1597	0.74	-0.9
1,951,211	+		Sama_1597	0.74	+1.4
1,951,212	-		Sama_1597	0.74	+1.3
1,951,212	-		Sama_1597	0.74	+0.6
1,951,278	-		Sama_1597	0.76	+0.0
1,951,280	+		Sama_1597	0.77	-0.7
1,951,280	+		Sama_1597	0.77	+1.0
1,951,281	-		Sama_1597	0.77	-0.7
1,951,287	+		Sama_1597	0.77	+0.2
1,951,287	+		Sama_1597	0.77	-1.5
1,951,287	+		Sama_1597	0.77	-2.2
1,951,287	+		Sama_1597	0.77	-0.9
1,951,287	+		Sama_1597	0.77	-0.7
1,951,287	+		Sama_1597	0.77	-2.6
1,951,288	-		Sama_1597	0.77	-0.6
1,951,288	-		Sama_1597	0.77	-1.5
1,951,289	+		Sama_1597	0.77	+1.7
1,951,290	-		Sama_1597	0.77	-0.1
1,951,373	+		Sama_1597	0.79	-0.1
1,951,374	-		Sama_1597	0.80	-2.1
1,951,375	+		Sama_1597	0.80	-2.3
1,951,420	-		Sama_1597	0.81	+2.6
1,951,420	-		Sama_1597	0.81	-1.1
1,951,455	+		Sama_1597	0.82	+1.3
1,951,455	+		Sama_1597	0.82	+0.4
1,951,463	+		Sama_1597	0.82	+0.3
1,951,464	-		Sama_1597	0.82	+0.3
1,951,464	-		Sama_1597	0.82	-0.5
1,951,464	-		Sama_1597	0.82	+1.9
1,951,471	+		Sama_1597	0.83	-0.6
1,951,496	+		Sama_1597	0.83	-1.9
1,951,496	+		Sama_1597	0.83	-1.0
1,951,502	+		Sama_1597	0.84	-1.2
1,951,503	-		Sama_1597	0.84	+1.6
1,951,508	-		Sama_1597	0.84	+2.5
1,951,627	-		Sama_1597	0.88	-1.7
1,951,627	-		Sama_1597	0.88	+1.0
1,951,732	+				+0.4
1,951,733	-				-0.1
1,951,733	-				-1.0
1,951,763	+				+0.5
1,951,764	-				-1.3
1,951,855	-				-0.0
1,951,855	-				+2.3
1,951,862	-				+0.8
1,951,872	+				+0.6
1,951,872	+				+0.3
1,951,872	+				+0.6
1,951,872	+				-1.3
1,951,872	+				-2.1
1,951,873	-				+3.1
1,951,873	-				+0.1
1,951,873	-				+2.1
1,951,873	-				+1.1
1,951,873	-				-1.1
1,951,875	-				-2.1
1,951,930	+				-0.2
1,951,990	+				-1.3
1,951,991	-				+1.8
1,952,046	+				+2.8
1,952,047	-				-0.7
1,952,071	+				-0.0
1,952,253	+		Sama_1598	0.35	+0.3
1,952,253	+		Sama_1598	0.35	+0.3
1,952,292	+		Sama_1598	0.41	+0.6
1,952,427	+		Sama_1598	0.60	-0.3
1,952,427	+		Sama_1598	0.60	-0.7
1,952,428	-		Sama_1598	0.60	-0.7
1,952,455	+		Sama_1598	0.64	+0.0
1,952,455	+		Sama_1598	0.64	-0.7
1,952,456	-		Sama_1598	0.64	-0.6
1,952,621	+		Sama_1598	0.88	-2.2
1,952,621	+		Sama_1598	0.88	+0.1
1,952,621	+		Sama_1598	0.88	+1.4
1,952,622	-		Sama_1598	0.89	-1.7
1,952,623	+		Sama_1598	0.89	-0.5
1,952,623	+		Sama_1598	0.89	-1.2
1,952,623	+		Sama_1598	0.89	+0.1
1,952,623	+		Sama_1598	0.89	-0.3
1,952,623	+		Sama_1598	0.89	-1.7
1,952,624	-		Sama_1598	0.89	+0.4
1,952,624	-		Sama_1598	0.89	-1.3
1,952,796	+				-0.7
1,952,823	-				-2.3
1,952,937	+		Sama_1599	0.23	-2.2
1,952,970	+		Sama_1599	0.28	-0.8
1,952,975	+		Sama_1599	0.29	+0.1
1,952,975	+		Sama_1599	0.29	+0.5
1,952,976	-		Sama_1599	0.29	-0.9
1,952,978	-		Sama_1599	0.30	+1.4
1,953,072	-		Sama_1599	0.46	-1.3
1,953,110	+		Sama_1599	0.53	+1.9
1,953,154	+		Sama_1599	0.60	-1.8
1,953,154	+		Sama_1599	0.60	-0.7
1,953,154	+		Sama_1599	0.60	-0.5
1,953,155	-		Sama_1599	0.61	+1.2
1,953,155	-		Sama_1599	0.61	+1.3
1,953,155	-		Sama_1599	0.61	+0.7
1,953,231	-		Sama_1599	0.74	-1.9
1,953,245	+		Sama_1599	0.76	+1.3
1,953,245	+		Sama_1599	0.76	-0.9
1,953,250	+		Sama_1599	0.77	+0.9
1,953,250	+		Sama_1599	0.77	+1.6
1,953,250	+		Sama_1599	0.77	+0.9
1,953,250	+		Sama_1599	0.77	+2.0
1,953,250	+		Sama_1599	0.77	-1.9
1,953,251	-		Sama_1599	0.77	-3.2
1,953,251	-		Sama_1599	0.77	+1.5
1,953,251	-		Sama_1599	0.77	-0.4
1,953,280	+		Sama_1599	0.82	-1.5
1,953,280	+		Sama_1599	0.82	+1.4
1,953,281	-		Sama_1599	0.83	-0.3
1,953,284	+		Sama_1599	0.83	+0.0
1,953,284	+		Sama_1599	0.83	-0.7
1,953,284	+		Sama_1599	0.83	+0.7
1,953,361	-				-1.7
1,953,362	+				+0.7
1,953,362	+				+1.5
1,953,501	+				-1.4
1,953,502	-				-0.5
1,953,529	+				+1.1
1,953,530	-				+1.5
1,953,530	-				-0.1
1,953,539	-				-1.1
1,953,590	+				+1.5
1,953,591	-				-0.7
1,953,603	-				+0.3
1,953,611	-				+0.4
1,953,631	-				+0.3
1,953,635	+				+2.1
1,953,635	+				-0.5
1,953,636	-				+0.4
1,953,636	-				+0.8
1,953,636	-				+0.9