Strain Fitness in Shewanella amazonensis SB2B around Sama_1529

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,858,057	+				-1.8
1,858,069	-				+0.0
1,858,131	-				+0.6
1,858,131	-				-1.3
1,858,154	-				-1.7
1,858,207	-				+2.3
1,858,207	-				-1.5
1,858,207	-				+2.9
1,858,207	-				-0.3
1,858,207	-				-2.3
1,858,329	-		Sama_1528	0.26	-0.7
1,858,331	-		Sama_1528	0.26	-0.5
1,858,331	-		Sama_1528	0.26	-1.0
1,858,347	-		Sama_1528	0.29	-1.5
1,858,404	-		Sama_1528	0.37	+0.3
1,858,404	-		Sama_1528	0.37	-0.3
1,858,683	-		Sama_1528	0.79	-1.0
1,858,695	-		Sama_1528	0.80	-0.3
1,858,771	-				-1.0
1,858,771	-				+1.8
1,858,777	-				-1.3
1,858,791	-				-0.3
1,858,839	-				+0.0
1,858,840	+				-1.3
1,858,884	+				-1.5
1,858,885	-				+0.1
1,858,885	-				-0.6
1,858,972	+				-0.7
1,858,972	+				+0.2
1,858,973	-				-0.5
1,858,973	-				-0.0
1,858,973	-				-0.3
1,859,002	+				+1.5
1,859,003	-				+1.3
1,859,003	-				-1.0
1,859,017	+				+1.5
1,859,018	-				-1.6
1,859,018	-				+0.1
1,859,027	-				-0.4
1,859,161	+		Sama_1529	0.14	-1.3
1,859,180	+		Sama_1529	0.16	-2.6
1,859,180	+		Sama_1529	0.16	-0.7
1,859,181	-		Sama_1529	0.16	-1.5
1,859,181	-		Sama_1529	0.16	+0.9
1,859,181	-		Sama_1529	0.16	+2.3
1,859,285	+		Sama_1529	0.22	+0.8
1,859,286	-		Sama_1529	0.22	-1.0
1,859,286	-		Sama_1529	0.22	-0.3
1,859,423	+		Sama_1529	0.31	-2.0
1,859,440	+		Sama_1529	0.32	+0.5
1,859,441	-		Sama_1529	0.32	-1.8
1,859,468	+		Sama_1529	0.34	-0.0
1,859,510	+		Sama_1529	0.37	-0.7
1,859,511	-		Sama_1529	0.37	-0.3
1,859,511	-		Sama_1529	0.37	-1.0
1,859,519	+		Sama_1529	0.37	+1.2
1,859,532	+		Sama_1529	0.38	-0.5
1,859,532	+		Sama_1529	0.38	-2.8
1,859,532	+		Sama_1529	0.38	+1.3
1,859,533	-		Sama_1529	0.38	-2.3
1,859,533	-		Sama_1529	0.38	-0.9
1,859,533	-		Sama_1529	0.38	-1.3
1,859,533	-		Sama_1529	0.38	-0.1
1,859,533	-		Sama_1529	0.38	+1.8
1,859,581	+		Sama_1529	0.41	-0.4
1,859,700	+		Sama_1529	0.49	-0.1
1,859,700	+		Sama_1529	0.49	-0.2
1,859,701	-		Sama_1529	0.49	+0.9
1,859,701	-		Sama_1529	0.49	+0.3
1,859,759	-		Sama_1529	0.53	-0.1
1,859,759	-		Sama_1529	0.53	-1.7
1,859,944	+		Sama_1529	0.65	+1.3
1,860,027	-		Sama_1529	0.70	+0.2
1,860,027	-		Sama_1529	0.70	-0.2
1,860,027	-		Sama_1529	0.70	-0.5
1,860,056	+		Sama_1529	0.72	-1.1
1,860,063	-		Sama_1529	0.73	-2.5
1,860,124	-		Sama_1529	0.76	+0.1
1,860,170	-		Sama_1529	0.79	-0.4
1,860,220	+		Sama_1529	0.83	+0.8
1,860,221	-		Sama_1529	0.83	-0.8
1,860,503	+				+0.7
1,860,526	-				-1.8
1,860,549	+				-2.4
1,860,572	-				-2.4
1,860,572	-				+0.3
1,860,572	-				-1.0
1,860,630	+		Sama_1530	0.11	-0.0
1,860,630	+		Sama_1530	0.11	-1.7
1,860,630	+		Sama_1530	0.11	+0.6
1,860,631	-		Sama_1530	0.11	-0.2
1,860,697	+		Sama_1530	0.17	-1.3
1,860,698	-		Sama_1530	0.17	+1.6
1,860,699	+		Sama_1530	0.17	-1.5
1,860,699	+		Sama_1530	0.17	+2.3
1,860,699	+		Sama_1530	0.17	+0.3
1,860,699	+		Sama_1530	0.17	+1.5
1,860,699	+		Sama_1530	0.17	+2.3
1,860,699	+		Sama_1530	0.17	-0.3
1,860,700	-		Sama_1530	0.18	-0.3
1,860,700	-		Sama_1530	0.18	-0.5
1,860,700	-		Sama_1530	0.18	+0.7
1,860,700	-		Sama_1530	0.18	-0.7
1,860,700	-		Sama_1530	0.18	+1.2
1,860,700	-		Sama_1530	0.18	-0.2
1,860,700	-		Sama_1530	0.18	+1.7
1,860,700	-		Sama_1530	0.18	+1.7
1,860,710	+		Sama_1530	0.19	+0.4
1,860,710	+		Sama_1530	0.19	+1.9
1,860,732	+		Sama_1530	0.21	+0.6
1,860,732	+		Sama_1530	0.21	+0.2
1,860,732	+		Sama_1530	0.21	-1.3
1,860,733	-		Sama_1530	0.21	-0.8
1,860,733	-		Sama_1530	0.21	+1.4
1,860,733	-		Sama_1530	0.21	-1.0
1,860,790	+		Sama_1530	0.27	-0.4
1,860,790	+		Sama_1530	0.27	-0.4
1,860,791	-		Sama_1530	0.27	+0.7
1,860,798	+		Sama_1530	0.27	+0.4
1,860,798	+		Sama_1530	0.27	-0.3
1,860,799	-		Sama_1530	0.27	+0.0
1,860,901	+		Sama_1530	0.38	-0.8
1,860,901	+		Sama_1530	0.38	+0.3
1,860,901	+		Sama_1530	0.38	+0.1
1,860,902	-		Sama_1530	0.38	+0.1
1,860,902	-		Sama_1530	0.38	-0.1
1,861,008	+		Sama_1530	0.48	-0.7
1,861,008	+		Sama_1530	0.48	+2.1
1,861,008	+		Sama_1530	0.48	+0.0
1,861,008	+		Sama_1530	0.48	+2.3
1,861,008	+		Sama_1530	0.48	+1.0
1,861,009	-		Sama_1530	0.48	-1.5
1,861,009	-		Sama_1530	0.48	+0.2
1,861,011	+		Sama_1530	0.49	-1.3
1,861,011	+		Sama_1530	0.49	-1.2
1,861,011	+		Sama_1530	0.49	-1.2
1,861,011	+		Sama_1530	0.49	+3.0
1,861,011	+		Sama_1530	0.49	-0.8
1,861,011	+		Sama_1530	0.49	+4.4
1,861,012	-		Sama_1530	0.49	+0.3
1,861,012	-		Sama_1530	0.49	+0.2
1,861,012	-		Sama_1530	0.49	+0.1
1,861,023	+		Sama_1530	0.50	+1.9
1,861,023	+		Sama_1530	0.50	+0.1
1,861,024	-		Sama_1530	0.50	+0.5
1,861,049	+		Sama_1530	0.52	-0.2
1,861,049	+		Sama_1530	0.52	-1.2
1,861,058	+		Sama_1530	0.53	-0.1
1,861,058	+		Sama_1530	0.53	-1.8
1,861,059	-		Sama_1530	0.53	+3.3
1,861,078	+		Sama_1530	0.55	+0.1
1,861,078	+		Sama_1530	0.55	+1.6
1,861,089	+		Sama_1530	0.56	+0.1
1,861,102	+		Sama_1530	0.58	-0.8
1,861,102	+		Sama_1530	0.58	-0.3
1,861,102	+		Sama_1530	0.58	-0.8
1,861,103	-		Sama_1530	0.58	-1.3
1,861,103	-		Sama_1530	0.58	-1.0
1,861,104	+		Sama_1530	0.58	-0.4
1,861,104	+		Sama_1530	0.58	-0.7
1,861,104	+		Sama_1530	0.58	-1.7
1,861,104	+		Sama_1530	0.58	+0.1
1,861,104	+		Sama_1530	0.58	+1.2
1,861,104	+		Sama_1530	0.58	-0.2
1,861,104	+		Sama_1530	0.58	-0.0
1,861,104	+		Sama_1530	0.58	+0.8
1,861,105	-		Sama_1530	0.58	+1.1
1,861,105	-		Sama_1530	0.58	+0.0
1,861,105	-		Sama_1530	0.58	+0.1
1,861,105	-		Sama_1530	0.58	-0.8
1,861,105	-		Sama_1530	0.58	+0.5
1,861,231	+		Sama_1530	0.71	-0.5
1,861,231	+		Sama_1530	0.71	-2.0
1,861,231	+		Sama_1530	0.71	+1.8
1,861,231	+		Sama_1530	0.71	+1.5
1,861,232	-		Sama_1530	0.71	-1.0
1,861,232	-		Sama_1530	0.71	+0.7
1,861,232	-		Sama_1530	0.71	+1.3
1,861,232	-		Sama_1530	0.71	+0.7
1,861,232	-		Sama_1530	0.71	+0.6
1,861,232	-		Sama_1530	0.71	-0.3
1,861,232	-		Sama_1530	0.71	-0.3
1,861,234	+		Sama_1530	0.71	+1.1
1,861,234	+		Sama_1530	0.71	-1.3
1,861,234	+		Sama_1530	0.71	+0.0
1,861,234	+		Sama_1530	0.71	-1.3
1,861,241	+		Sama_1530	0.72	+0.6
1,861,241	+		Sama_1530	0.72	-0.1
1,861,241	+		Sama_1530	0.72	+0.6
1,861,241	+		Sama_1530	0.72	-1.7
1,861,242	-		Sama_1530	0.72	+3.1