Strain Fitness in Shewanella amazonensis SB2B around Sama_1521

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,849,682	+				-0.2
1,849,685	+				-1.7
1,849,728	-				+2.0
1,849,728	-				-2.6
1,849,743	+				-2.0
1,849,743	+				-0.5
1,849,743	+				-1.8
1,849,744	-				-0.5
1,849,746	+				-0.2
1,849,762	-				+0.6
1,849,769	+				+0.0
1,849,769	+				-1.1
1,849,787	-				-1.0
1,849,798	+				-2.4
1,849,799	-				+1.8
1,849,839	+				-0.7
1,849,839	+				-3.1
1,849,942	+		Sama_1520	0.20	+1.3
1,850,047	+		Sama_1520	0.33	+2.0
1,850,094	+		Sama_1520	0.39	-0.2
1,850,095	-		Sama_1520	0.39	-1.6
1,850,130	+		Sama_1520	0.44	+0.7
1,850,209	+		Sama_1520	0.53	+2.0
1,850,212	+		Sama_1520	0.54	+0.6
1,850,213	-		Sama_1520	0.54	-1.7
1,850,312	-		Sama_1520	0.66	+0.8
1,850,326	+		Sama_1520	0.68	-1.2
1,850,347	-		Sama_1520	0.70	+1.9
1,850,384	+		Sama_1520	0.75	+2.3
1,850,385	-		Sama_1520	0.75	-0.9
1,850,385	-		Sama_1520	0.75	-1.0
1,850,386	+		Sama_1520	0.75	-0.7
1,850,402	-		Sama_1520	0.77	+1.6
1,850,427	-		Sama_1520	0.80	+0.6
1,850,427	-		Sama_1520	0.80	+2.3
1,850,427	-		Sama_1520	0.80	+1.5
1,850,460	+		Sama_1520	0.84	-0.7
1,850,470	+		Sama_1520	0.85	+0.1
1,850,471	-		Sama_1520	0.85	-0.5
1,850,471	-		Sama_1520	0.85	+1.1
1,850,536	+				-0.7
1,850,536	+				-0.7
1,850,536	+				+0.7
1,850,536	+				-2.0
1,850,536	+				-0.9
1,850,536	+				-2.4
1,850,537	-				+0.3
1,850,537	-				-1.8
1,850,537	-				+0.8
1,850,540	+				+0.3
1,850,540	+				+2.3
1,850,541	-				-0.2
1,850,541	-				+1.2
1,850,541	-				-2.9
1,850,541	-				+1.0
1,850,546	+				+1.0
1,850,588	+				+1.0
1,850,595	+				+1.3
1,850,595	+				+1.3
1,850,607	+				-0.8
1,850,607	+				-1.9
1,850,607	+				+2.9
1,850,607	+				-2.0
1,850,607	+				-1.0
1,850,608	-				+3.9
1,850,608	-				-0.0
1,850,638	-				+0.7
1,850,638	-				-2.6
1,850,707	+				+0.1
1,850,714	+				+2.1
1,850,714	+				-1.3
1,850,714	+				+2.4
1,850,714	+				-1.0
1,850,714	+				+1.7
1,850,714	+				+0.4
1,850,714	+				-0.5
1,850,746	+		Sama_1521	0.14	-0.2
1,850,747	-		Sama_1521	0.14	+0.1
1,850,757	+		Sama_1521	0.16	+0.0
1,850,774	+		Sama_1521	0.19	-0.3
1,850,774	+		Sama_1521	0.19	-0.1
1,850,775	-		Sama_1521	0.19	-1.5
1,850,776	+		Sama_1521	0.19	-1.9
1,850,906	+		Sama_1521	0.42	-2.7
1,850,906	+		Sama_1521	0.42	-2.0
1,850,909	+		Sama_1521	0.43	-0.7
1,850,909	+		Sama_1521	0.43	-0.2
1,850,909	+		Sama_1521	0.43	-2.2
1,851,032	-		Sama_1521	0.65	+0.5
1,851,118	+		Sama_1521	0.80	-0.2
1,851,155	+		Sama_1521	0.87	+0.5
1,851,155	+		Sama_1521	0.87	-0.9
1,851,155	+		Sama_1521	0.87	-0.8
1,851,155	+		Sama_1521	0.87	+1.3
1,851,156	-		Sama_1521	0.87	-0.2
1,851,156	-		Sama_1521	0.87	+1.6
1,851,210	-				+1.7
1,851,224	+				-1.8
1,851,230	+				-0.7
1,851,230	+				-1.8
1,851,230	+				-1.2
1,851,230	+				-0.4
1,851,230	+				+2.3
1,851,230	+				+2.2
1,851,230	+				-2.7
1,851,230	+				-1.5
1,851,230	+				-2.1
1,851,230	+				-0.7
1,851,231	-				-1.9
1,851,231	-				-0.9
1,851,231	-				-0.4
1,851,231	-				-0.2
1,851,268	+				-0.2
1,851,276	+				-1.2
1,851,277	-				-0.5
1,851,282	+				-2.2
1,851,302	-				-0.5
1,851,399	-				+1.9
1,851,432	-				-3.2
1,851,453	-				+1.5
1,851,459	+				-1.0
1,851,571	+		Sama_1522	0.33	+1.3
1,851,670	-		Sama_1522	0.70	-0.4
1,851,670	-		Sama_1522	0.70	+1.3
1,851,696	+		Sama_1522	0.80	+0.1
1,851,696	+		Sama_1522	0.80	-0.3
1,851,723	-				+0.2
1,851,730	-				+0.1
1,851,769	+				+0.0
1,851,782	+				-0.7
1,851,782	+				+2.4
1,851,782	+				-2.8
1,851,783	-				+2.9
1,851,812	+				-0.5
1,851,812	+				-0.4
1,851,812	+				-1.2
1,851,812	+				-0.7
1,851,812	+				-0.5
1,851,813	-				+0.9
1,851,813	-				-1.0
1,851,813	-				+0.0
1,851,814	+				-1.7
1,851,860	+				+0.7
1,851,861	-				-2.9
1,851,861	-				-1.0
1,851,861	-				-1.5
1,851,864	+				-1.4
1,851,937	+		Sama_1523	0.10	+0.6
1,851,938	-		Sama_1523	0.10	-1.7
1,851,952	+		Sama_1523	0.11	-0.7
1,851,986	+		Sama_1523	0.13	+1.9
1,851,986	+		Sama_1523	0.13	-0.9
1,851,987	-		Sama_1523	0.13	-0.1
1,851,987	-		Sama_1523	0.13	-1.2
1,851,987	-		Sama_1523	0.13	+0.4
1,851,987	-		Sama_1523	0.13	+1.3
1,851,987	-		Sama_1523	0.13	-1.7
1,852,010	+		Sama_1523	0.14	+1.1
1,852,010	+		Sama_1523	0.14	-1.8
1,852,010	+		Sama_1523	0.14	-0.5
1,852,010	+		Sama_1523	0.14	-1.0
1,852,010	+		Sama_1523	0.14	-0.2
1,852,011	-		Sama_1523	0.15	-1.0
1,852,011	-		Sama_1523	0.15	-1.5
1,852,031	-		Sama_1523	0.16	-0.9
1,852,041	-		Sama_1523	0.16	+0.2
1,852,041	-		Sama_1523	0.16	-0.6
1,852,049	-		Sama_1523	0.17	+2.1
1,852,063	+		Sama_1523	0.18	-1.2
1,852,068	+		Sama_1523	0.18	+0.3
1,852,091	+		Sama_1523	0.19	-2.0
1,852,091	+		Sama_1523	0.19	-0.8
1,852,092	-		Sama_1523	0.19	-2.6
1,852,094	+		Sama_1523	0.19	-1.6
1,852,094	+		Sama_1523	0.19	-1.1
1,852,095	-		Sama_1523	0.19	+1.0
1,852,151	+		Sama_1523	0.23	-1.0
1,852,151	+		Sama_1523	0.23	+1.3
1,852,151	+		Sama_1523	0.23	+2.7
1,852,151	+		Sama_1523	0.23	+1.8
1,852,153	+		Sama_1523	0.23	+0.8
1,852,224	+		Sama_1523	0.27	-0.3
1,852,226	+		Sama_1523	0.27	-0.3
1,852,226	+		Sama_1523	0.27	-0.2
1,852,226	+		Sama_1523	0.27	-1.7
1,852,226	+		Sama_1523	0.27	-0.2
1,852,226	+		Sama_1523	0.27	-2.3
1,852,226	+		Sama_1523	0.27	-1.3