Strain Fitness in Shewanella amazonensis SB2B around Sama_1477

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,785,058	+		Sama_1475	0.77	+1.6
1,785,141	+		Sama_1475	0.85	-1.0
1,785,141	+		Sama_1475	0.85	+1.4
1,785,142	-		Sama_1475	0.85	-0.7
1,785,142	-		Sama_1475	0.85	-1.6
1,785,159	-		Sama_1475	0.87	-0.1
1,785,186	+		Sama_1475	0.89	-2.0
1,785,186	+		Sama_1475	0.89	+0.4
1,785,186	+		Sama_1475	0.89	-0.2
1,785,189	+		Sama_1475	0.90	-0.8
1,785,189	+		Sama_1475	0.90	-0.8
1,785,189	+		Sama_1475	0.90	+0.2
1,785,190	-		Sama_1475	0.90	+0.4
1,785,190	-		Sama_1475	0.90	-0.6
1,785,192	+				-0.6
1,785,192	+				-2.1
1,785,193	-				-0.2
1,785,193	-				-1.6
1,785,218	+				+1.6
1,785,245	+				-2.5
1,785,251	-				+0.2
1,785,355	+		Sama_1476	0.12	-0.1
1,785,355	+		Sama_1476	0.12	-0.2
1,785,355	+		Sama_1476	0.12	+0.5
1,785,455	+		Sama_1476	0.32	-1.2
1,785,455	+		Sama_1476	0.32	+1.4
1,785,455	+		Sama_1476	0.32	-1.4
1,785,455	+		Sama_1476	0.32	+1.3
1,785,455	+		Sama_1476	0.32	-0.2
1,785,455	+		Sama_1476	0.32	+1.4
1,785,455	+		Sama_1476	0.32	-1.4
1,785,455	+		Sama_1476	0.32	+0.8
1,785,455	+		Sama_1476	0.32	+1.2
1,785,456	-		Sama_1476	0.33	-1.2
1,785,456	-		Sama_1476	0.33	+1.1
1,785,456	-		Sama_1476	0.33	-2.8
1,785,456	-		Sama_1476	0.33	+0.7
1,785,457	+		Sama_1476	0.33	+0.1
1,785,457	+		Sama_1476	0.33	+2.1
1,785,458	-		Sama_1476	0.33	+0.7
1,785,490	-		Sama_1476	0.39	+1.7
1,785,536	+		Sama_1476	0.49	-0.8
1,785,536	+		Sama_1476	0.49	+2.1
1,785,536	+		Sama_1476	0.49	-2.0
1,785,537	-		Sama_1476	0.49	+0.6
1,785,537	-		Sama_1476	0.49	+1.0
1,785,547	+		Sama_1476	0.51	+1.1
1,785,651	+		Sama_1476	0.71	-0.2
1,785,651	+		Sama_1476	0.71	-1.3
1,785,716	+		Sama_1476	0.84	+2.2
1,785,717	-		Sama_1476	0.85	+0.6
1,785,750	+				-1.3
1,785,791	+				-0.4
1,785,792	-				-0.2
1,785,946	+				-0.6
1,785,972	+				-0.3
1,786,141	+				+0.4
1,786,141	+				+2.1
1,786,165	-				+0.1
1,786,165	-				-0.4
1,786,181	-				-1.8
1,786,224	+				-1.4
1,786,237	-				+1.1
1,786,261	-				+0.1
1,786,391	+		Sama_1477	0.12	+4.7
1,786,392	-		Sama_1477	0.12	+0.6
1,786,392	-		Sama_1477	0.12	+0.1
1,786,392	-		Sama_1477	0.12	+0.8
1,786,395	-		Sama_1477	0.12	+2.9
1,786,416	+		Sama_1477	0.13	+1.7
1,786,491	+		Sama_1477	0.15	+2.4
1,786,491	+		Sama_1477	0.15	+0.6
1,786,492	-		Sama_1477	0.15	-1.7
1,786,538	-		Sama_1477	0.17	-1.0
1,786,538	-		Sama_1477	0.17	-1.6
1,786,538	-		Sama_1477	0.17	+0.1
1,786,677	+		Sama_1477	0.22	-1.6
1,786,701	+		Sama_1477	0.23	-1.0
1,786,702	-		Sama_1477	0.23	+2.9
1,786,702	-		Sama_1477	0.23	+0.5
1,786,797	-		Sama_1477	0.26	+0.0
1,786,835	+		Sama_1477	0.27	-1.3
1,786,836	-		Sama_1477	0.27	+1.8
1,786,854	-		Sama_1477	0.28	+0.4
1,786,854	-		Sama_1477	0.28	+1.3
1,786,861	+		Sama_1477	0.28	+2.1
1,786,862	-		Sama_1477	0.28	-2.1
1,786,863	+		Sama_1477	0.28	+0.8
1,787,101	+		Sama_1477	0.37	-1.1
1,787,101	+		Sama_1477	0.37	-1.2
1,787,101	+		Sama_1477	0.37	-2.2
1,787,102	-		Sama_1477	0.37	+0.2
1,787,103	+		Sama_1477	0.37	-1.2
1,787,103	+		Sama_1477	0.37	-2.5
1,787,104	-		Sama_1477	0.37	-0.0
1,787,151	+		Sama_1477	0.39	-2.2
1,787,151	+		Sama_1477	0.39	+0.2
1,787,158	-		Sama_1477	0.39	-0.6
1,787,195	+		Sama_1477	0.40	-0.1
1,787,265	+		Sama_1477	0.43	+0.0
1,787,265	+		Sama_1477	0.43	-1.4
1,787,266	-		Sama_1477	0.43	-0.2
1,787,266	-		Sama_1477	0.43	-1.5
1,787,266	-		Sama_1477	0.43	-1.2
1,787,266	-		Sama_1477	0.43	+1.8
1,787,316	+		Sama_1477	0.44	+1.1
1,787,317	-		Sama_1477	0.44	+2.2
1,787,317	-		Sama_1477	0.44	-0.2
1,787,347	+		Sama_1477	0.45	-0.6
1,787,348	-		Sama_1477	0.45	-1.1
1,787,348	-		Sama_1477	0.45	-0.4
1,787,348	-		Sama_1477	0.45	+1.0
1,787,348	-		Sama_1477	0.45	-1.8
1,787,360	+		Sama_1477	0.46	-1.6
1,787,362	+		Sama_1477	0.46	+0.2
1,787,371	-		Sama_1477	0.46	+2.1
1,787,383	-		Sama_1477	0.47	+1.5
1,787,388	+		Sama_1477	0.47	-0.2
1,787,388	+		Sama_1477	0.47	-0.0
1,787,388	+		Sama_1477	0.47	+0.9
1,787,469	+		Sama_1477	0.50	-1.2
1,787,469	+		Sama_1477	0.50	+2.6
1,787,470	-		Sama_1477	0.50	-1.5
1,787,470	-		Sama_1477	0.50	-0.8
1,787,470	-		Sama_1477	0.50	-1.4
1,787,473	+		Sama_1477	0.50	-0.1
1,787,473	+		Sama_1477	0.50	+2.1
1,787,474	-		Sama_1477	0.50	-1.0
1,787,474	-		Sama_1477	0.50	-1.2
1,787,526	+		Sama_1477	0.52	-0.8
1,787,592	+		Sama_1477	0.54	-0.8
1,787,593	-		Sama_1477	0.54	-0.2
1,787,594	+		Sama_1477	0.54	+0.0
1,787,595	-		Sama_1477	0.54	+1.5
1,787,595	-		Sama_1477	0.54	+1.4
1,787,913	-		Sama_1477	0.65	-1.2
1,787,998	-		Sama_1477	0.68	+0.3
1,788,087	+		Sama_1477	0.71	+0.8
1,788,087	+		Sama_1477	0.71	+0.0
1,788,087	+		Sama_1477	0.71	-1.0
1,788,088	-		Sama_1477	0.72	-1.0
1,788,094	+		Sama_1477	0.72	+0.3
1,788,175	+		Sama_1477	0.75	+1.9
1,788,175	+		Sama_1477	0.75	+0.2
1,788,181	+		Sama_1477	0.75	-1.3
1,788,181	+		Sama_1477	0.75	-0.6
1,788,181	+		Sama_1477	0.75	+0.3
1,788,181	+		Sama_1477	0.75	-1.0
1,788,182	-		Sama_1477	0.75	-0.6
1,788,182	-		Sama_1477	0.75	+0.1
1,788,182	-		Sama_1477	0.75	+0.8
1,788,182	-		Sama_1477	0.75	-1.2
1,788,182	-		Sama_1477	0.75	+0.3
1,788,301	+		Sama_1477	0.79	-0.6
1,788,301	+		Sama_1477	0.79	-2.2
1,788,301	+		Sama_1477	0.79	+0.5
1,788,343	+		Sama_1477	0.80	+0.3
1,788,344	-		Sama_1477	0.81	+0.8
1,788,344	-		Sama_1477	0.81	+0.4
1,788,439	+		Sama_1477	0.84	-0.6
1,788,440	-		Sama_1477	0.84	-2.3
1,788,440	-		Sama_1477	0.84	+1.4
1,788,446	+		Sama_1477	0.84	+0.2
1,788,501	+		Sama_1477	0.86	+2.4
1,788,501	+		Sama_1477	0.86	-0.2
1,788,736	+				+0.0
1,788,736	+				+3.4
1,788,737	-				-0.4
1,788,737	-				+0.4
1,788,777	+				-0.2
1,788,896	-				-0.4
1,788,906	+				-0.6
1,788,906	+				+0.8
1,788,906	+				-0.5
1,788,971	+				-0.8
1,788,971	+				-0.6
1,788,971	+				-1.6
1,788,972	-				+0.6
1,788,972	-				-1.6
1,789,011	+				+0.4
1,789,012	-				+0.0
1,789,012	-				-2.3
1,789,033	+				-1.4
1,789,033	+				-0.2
1,789,033	+				-1.1
1,789,034	-				+0.1
1,789,034	-				-0.2
1,789,034	-				-2.5
1,789,034	-				-0.6
1,789,034	-				-1.0
1,789,144	-				-1.3
1,789,144	-				+0.1
1,789,173	+				-1.6
1,789,184	+				+0.1
1,789,186	+				+0.0
1,789,186	+				-0.8
1,789,186	+				-0.2
1,789,187	-				-1.4
1,789,187	-				+1.6
1,789,187	-				+1.9
1,789,187	-				+1.0
1,789,193	-				+1.1
1,789,237	-				+0.4
1,789,242	+				-0.5
1,789,243	-				+1.4
1,789,243	-				-2.0
1,789,245	+				+1.7
1,789,253	-				-1.8
1,789,263	+				+2.2
1,789,263	+				-1.8
1,789,264	-				-0.4
1,789,294	+				+0.7
1,789,294	+				+1.4
1,789,294	+				-1.9
1,789,294	+				+0.4
1,789,294	+				+1.8
1,789,295	-				+0.6
1,789,295	-				-2.2
1,789,295	-				-0.4
1,789,295	-				-0.8
1,789,295	-				-2.5
1,789,295	-				-0.4
1,789,378	-				-0.2
1,789,439	-		Sama_1478	0.15	+1.8
1,789,478	+		Sama_1478	0.19	-0.6
1,789,478	+		Sama_1478	0.19	+0.6
1,789,478	+		Sama_1478	0.19	-0.6
1,789,479	-		Sama_1478	0.19	+0.9
1,789,479	-		Sama_1478	0.19	-0.8
1,789,479	-		Sama_1478	0.19	-2.7
1,789,502	+		Sama_1478	0.21	-3.8
1,789,502	+		Sama_1478	0.21	+2.4
1,789,503	-		Sama_1478	0.21	-2.1
1,789,503	-		Sama_1478	0.21	-2.4
1,789,619	+		Sama_1478	0.32	-0.5
1,789,628	+		Sama_1478	0.33	-1.4
1,789,628	+		Sama_1478	0.33	+1.6
1,789,628	+		Sama_1478	0.33	+0.4
1,789,628	+		Sama_1478	0.33	-0.9
1,789,628	+		Sama_1478	0.33	+0.4
1,789,628	+		Sama_1478	0.33	+2.8
1,789,629	-		Sama_1478	0.33	-0.3
1,789,629	-		Sama_1478	0.33	-1.0
1,789,629	-		Sama_1478	0.33	+1.6
1,789,629	-		Sama_1478	0.33	+2.7
1,789,629	-		Sama_1478	0.33	-0.6
1,789,630	+		Sama_1478	0.33	-1.8
1,789,630	+		Sama_1478	0.33	-1.8
1,789,630	+		Sama_1478	0.33	-0.3
1,789,631	-		Sama_1478	0.33	-1.4
1,789,631	-		Sama_1478	0.33	+0.6
1,789,631	-		Sama_1478	0.33	-3.9
1,789,631	-		Sama_1478	0.33	-0.4
1,789,631	-		Sama_1478	0.33	+0.9
1,789,631	-		Sama_1478	0.33	+0.3
1,789,631	-		Sama_1478	0.33	+0.6
1,789,677	+		Sama_1478	0.37	+0.8
1,789,678	-		Sama_1478	0.37	+1.6
1,789,683	+		Sama_1478	0.38	-1.8
1,789,683	+		Sama_1478	0.38	+1.4
1,789,684	-		Sama_1478	0.38	+1.0
1,789,684	-		Sama_1478	0.38	-0.2
1,789,737	+		Sama_1478	0.43	-1.6
1,789,738	-		Sama_1478	0.43	-2.3
1,789,763	+		Sama_1478	0.45	-1.0
1,789,763	+		Sama_1478	0.45	+1.6
1,789,763	+		Sama_1478	0.45	+1.2
1,789,763	+		Sama_1478	0.45	+0.2
1,789,763	+		Sama_1478	0.45	-2.5
1,789,764	-		Sama_1478	0.45	-0.0
1,789,766	-		Sama_1478	0.45	+0.1
1,789,771	+		Sama_1478	0.46	-2.1
1,789,786	+		Sama_1478	0.47	+0.5
1,789,786	+		Sama_1478	0.47	-1.0
1,789,786	+		Sama_1478	0.47	+0.4
1,789,789	+		Sama_1478	0.48	-1.1
1,789,840	+		Sama_1478	0.52	+1.4
1,789,840	+		Sama_1478	0.52	-0.2
1,789,841	-		Sama_1478	0.52	-1.1