Strain Fitness in Shewanella amazonensis SB2B around Sama_1413

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,715,057	-				-0.4
1,715,057	-				-0.6
1,715,086	+				-2.3
1,715,086	+				-0.2
1,715,117	+				-2.1
1,715,181	+				-0.9
1,715,182	-				+0.7
1,715,217	+				+2.1
1,715,218	-				-1.0
1,715,218	-				+0.4
1,715,275	+				+1.4
1,715,275	+				-0.9
1,715,276	-				+0.4
1,715,324	-				+0.1
1,715,335	+				-1.2
1,715,335	+				+0.8
1,715,335	+				-2.0
1,715,371	+				-0.8
1,715,371	+				-2.1
1,715,371	+				+0.8
1,715,372	-				-2.3
1,715,387	+				+2.0
1,715,387	+				-0.0
1,715,387	+				+1.4
1,715,388	-				+0.4
1,715,388	-				+0.3
1,715,411	-		Sama_1412	0.13	-0.1
1,715,462	-		Sama_1412	0.22	-0.7
1,715,500	+		Sama_1412	0.28	-0.6
1,715,509	+		Sama_1412	0.30	-0.9
1,715,554	+		Sama_1412	0.38	+0.4
1,715,597	+		Sama_1412	0.45	-0.1
1,715,597	+		Sama_1412	0.45	+0.9
1,715,598	-		Sama_1412	0.46	+0.9
1,715,607	+		Sama_1412	0.47	-0.6
1,715,608	-		Sama_1412	0.47	+1.4
1,715,626	+		Sama_1412	0.50	-2.7
1,715,626	+		Sama_1412	0.50	+1.0
1,715,627	-		Sama_1412	0.51	-0.9
1,715,675	-		Sama_1412	0.59	-0.7
1,715,714	+		Sama_1412	0.66	-1.4
1,715,726	+		Sama_1412	0.68	+0.2
1,715,726	+		Sama_1412	0.68	+0.4
1,715,743	+		Sama_1412	0.71	-0.9
1,715,841	-		Sama_1412	0.88	-1.4
1,715,880	-				+0.1
1,715,931	+				+0.6
1,715,931	+				+0.9
1,715,932	-				+1.9
1,715,938	+				-2.1
1,715,938	+				-1.2
1,715,938	+				+2.9
1,715,938	+				-1.9
1,715,938	+				+0.9
1,715,938	+				-0.1
1,715,939	-				-1.4
1,715,939	-				-1.6
1,715,939	-				-2.2
1,715,992	+				-1.4
1,715,993	-				+0.5
1,715,998	-				-0.5
1,716,009	+				+0.6
1,716,010	-				+0.4
1,716,027	-				-0.9
1,716,035	+				-1.4
1,716,043	+				+0.9
1,716,044	-				-0.3
1,716,044	-				-1.6
1,716,045	+				-1.4
1,716,045	+				+2.9
1,716,046	-				+0.4
1,716,046	-				+0.4
1,716,099	-		Sama_1413	0.12	-0.9
1,716,099	-		Sama_1413	0.12	+0.3
1,716,136	+		Sama_1413	0.21	-0.6
1,716,137	-		Sama_1413	0.21	+0.2
1,716,191	-		Sama_1413	0.35	+0.6
1,716,274	+		Sama_1413	0.55	-1.9
1,716,282	+		Sama_1413	0.57	+1.1
1,716,282	+		Sama_1413	0.57	-3.4
1,716,379	+		Sama_1413	0.82	-1.6
1,716,475	+				+0.1
1,716,476	-				-0.3
1,716,488	+				+1.4
1,716,508	+				+5.1
1,716,508	+				+0.8
1,716,509	-				+1.4
1,716,519	+				-2.7
1,716,519	+				+0.2
1,716,519	+				-0.3
1,716,520	-				+2.1
1,716,567	+		Sama_1414	0.19	+2.0
1,716,567	+		Sama_1414	0.19	-0.4
1,716,568	-		Sama_1414	0.19	+0.2
1,716,568	-		Sama_1414	0.19	+0.4
1,716,568	-		Sama_1414	0.19	-2.7
1,716,568	-		Sama_1414	0.19	+1.0
1,716,638	-		Sama_1414	0.36	-0.0
1,716,638	-		Sama_1414	0.36	-1.8
1,716,684	+		Sama_1414	0.47	+0.6
1,716,828	+		Sama_1414	0.82	+1.5
1,716,828	+		Sama_1414	0.82	-2.2
1,716,889	+				-0.9
1,716,889	+				-0.6
1,716,889	+				+0.6
1,716,889	+				-0.9
1,716,890	-				+1.1
1,716,890	-				+0.4
1,716,903	-				+1.4
1,716,907	-				-2.3
1,716,920	+				+0.2
1,716,921	-				-1.1
1,716,970	-				+1.2
1,716,979	+				+0.9
1,716,979	+				-0.4
1,716,979	+				-1.2
1,716,980	-				+2.7
1,716,991	-				+1.4
1,716,991	-				-0.5
1,717,125	+		Sama_1415	0.18	+0.6
1,717,126	-		Sama_1415	0.18	+0.9
1,717,126	-		Sama_1415	0.18	+0.2
1,717,142	-		Sama_1415	0.20	-1.4
1,717,149	-		Sama_1415	0.21	-0.4
1,717,225	+		Sama_1415	0.30	-1.4
1,717,248	-		Sama_1415	0.32	+2.5
1,717,268	-		Sama_1415	0.35	-0.3
1,717,278	+		Sama_1415	0.36	+0.0
1,717,279	-		Sama_1415	0.36	+0.8
1,717,319	-		Sama_1415	0.40	-1.7
1,717,319	-		Sama_1415	0.40	+0.1
1,717,319	-		Sama_1415	0.40	+3.0
1,717,319	-		Sama_1415	0.40	+0.2
1,717,411	+		Sama_1415	0.51	-1.3
1,717,412	-		Sama_1415	0.51	+2.6
1,717,428	+		Sama_1415	0.53	-2.2
1,717,428	+		Sama_1415	0.53	-0.3
1,717,429	-		Sama_1415	0.53	-2.2
1,717,429	-		Sama_1415	0.53	-1.6
1,717,429	-		Sama_1415	0.53	+0.4
1,717,432	+		Sama_1415	0.54	-0.9
1,717,432	+		Sama_1415	0.54	-1.6
1,717,432	+		Sama_1415	0.54	+3.0
1,717,432	+		Sama_1415	0.54	+1.5
1,717,433	-		Sama_1415	0.54	-1.4