Strain Fitness in Shewanella amazonensis SB2B around Sama_1342

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,633,735	+				+1.4
1,633,735	+				+1.2
1,633,735	+				+1.1
1,633,812	+				-0.9
1,633,812	+				-1.5
1,633,812	+				-0.2
1,633,813	-				-0.0
1,633,827	+		Sama_1341	0.12	+0.3
1,633,864	+		Sama_1341	0.20	-1.1
1,633,900	+		Sama_1341	0.27	+0.4
1,633,910	+		Sama_1341	0.30	+0.4
1,634,012	-		Sama_1341	0.51	+1.9
1,634,067	+		Sama_1341	0.63	+1.6
1,634,067	+		Sama_1341	0.63	+1.6
1,634,172	-		Sama_1341	0.85	+0.4
1,634,192	-		Sama_1341	0.89	+2.0
1,634,192	-		Sama_1341	0.89	-3.2
1,634,222	+				-2.4
1,634,222	+				+1.6
1,634,234	-				-1.2
1,634,262	+				-1.2
1,634,276	+				+1.2
1,634,276	+				+0.2
1,634,276	+				+0.2
1,634,277	-				-1.5
1,634,282	+				-2.5
1,634,282	+				+0.0
1,634,282	+				+1.2
1,634,283	-				-1.4
1,634,283	-				-0.5
1,634,283	-				-0.2
1,634,283	-				+1.1
1,634,283	-				-1.6
1,634,283	-				-0.6
1,634,283	-				-0.2
1,634,302	+				-0.6
1,634,302	+				-0.2
1,634,303	-				+0.4
1,634,303	-				-0.3
1,634,303	-				-2.0
1,634,303	-				-1.4
1,634,491	-				-2.0
1,634,617	-				-1.4
1,634,617	-				-1.2
1,634,666	+				+2.4
1,634,719	+				+0.2
1,634,760	+		Sama_1342	0.15	+0.4
1,634,839	+		Sama_1342	0.31	-0.9
1,634,898	+		Sama_1342	0.42	+0.1
1,634,898	+		Sama_1342	0.42	-0.4
1,634,943	+		Sama_1342	0.51	+2.2
1,634,944	-		Sama_1342	0.51	-1.8
1,634,944	-		Sama_1342	0.51	-0.9
1,634,944	-		Sama_1342	0.51	+2.1
1,635,000	+		Sama_1342	0.62	+0.9
1,635,001	-		Sama_1342	0.62	-2.3
1,635,083	+		Sama_1342	0.78	-0.4
1,635,083	+		Sama_1342	0.78	+1.7
1,635,138	+		Sama_1342	0.89	+1.2
1,635,138	+		Sama_1342	0.89	+1.2
1,635,138	+		Sama_1342	0.89	-1.4
1,635,147	+				+0.8
1,635,147	+				-0.4
1,635,147	+				+1.2
1,635,147	+				+1.6
1,635,148	-				-0.6
1,635,148	-				-1.6
1,635,177	-				+0.3
1,635,191	+				+2.1
1,635,192	-				-0.3
1,635,204	+				+0.4
1,635,211	+				-2.2
1,635,221	+				-1.3
1,635,222	-				+0.6
1,635,330	-				+0.1
1,635,339	-				+0.1
1,635,362	-				+2.1
1,635,362	-				-1.0
1,635,371	-				+0.1
1,635,371	-				+0.7
1,635,376	+				+0.1
1,635,377	-				-0.7
1,635,391	-				+0.4
1,635,393	-				+0.9
1,635,406	-				+0.3
1,635,420	-				-2.4
1,635,459	+				-0.7
1,635,463	+				-1.4
1,635,474	-				-0.3
1,635,543	+				-0.7
1,635,562	+				-1.7
1,635,568	-				+0.4
1,635,596	+				-0.2
1,635,599	+				-0.4
1,635,641	-				+0.1
1,635,745	-				-0.4
1,635,749	+				+0.8
1,635,811	-		Sama_1343	0.20	-0.0
1,635,847	-		Sama_1343	0.28	+0.8
1,635,894	+		Sama_1343	0.40	-0.3
1,635,926	-		Sama_1343	0.47	+0.4
1,636,167	+				-1.5