Strain Fitness in Shewanella amazonensis SB2B around Sama_1303

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,586,620	+				+0.4
1,586,693	-				+0.7
1,586,693	-				-2.7
1,586,849	-		Sama_1302	0.24	+0.4
1,586,857	-		Sama_1302	0.26	+0.6
1,586,857	-		Sama_1302	0.26	+0.4
1,586,857	-		Sama_1302	0.26	-0.6
1,586,867	-		Sama_1302	0.29	+0.9
1,586,867	-		Sama_1302	0.29	+1.1
1,586,906	-		Sama_1302	0.40	+1.3
1,586,952	-		Sama_1302	0.53	+1.3
1,586,952	-		Sama_1302	0.53	-3.4
1,586,952	-		Sama_1302	0.53	-1.4
1,586,952	-		Sama_1302	0.53	-1.5
1,586,952	-		Sama_1302	0.53	+3.0
1,587,031	+		Sama_1302	0.75	-1.4
1,587,088	+				+0.5
1,587,102	+				+0.9
1,587,109	+				+1.2
1,587,109	+				+0.4
1,587,111	+				+0.4
1,587,174	+				-1.7
1,587,194	-				+0.4
1,587,194	-				-0.6
1,587,241	-				-2.0
1,587,292	+				-0.6
1,587,292	+				+2.0
1,587,293	-				-1.1
1,587,307	-				-0.3
1,587,307	-				-0.1
1,587,307	-				+0.3
1,587,356	+				-1.9
1,587,357	-				-0.9
1,587,357	-				+0.7
1,587,384	-				-1.8
1,587,414	+		Sama_1303	0.11	-0.1
1,587,415	-		Sama_1303	0.11	-1.4
1,587,429	+		Sama_1303	0.13	-0.3
1,587,429	+		Sama_1303	0.13	-0.7
1,587,449	-		Sama_1303	0.15	+0.7
1,587,462	+		Sama_1303	0.16	-1.7
1,587,462	+		Sama_1303	0.16	+2.8
1,587,462	+		Sama_1303	0.16	+0.7
1,587,463	-		Sama_1303	0.16	-1.9
1,587,463	-		Sama_1303	0.16	+0.3
1,587,498	+		Sama_1303	0.20	+0.2
1,587,535	-		Sama_1303	0.24	-1.7
1,587,535	-		Sama_1303	0.24	+0.0
1,587,535	-		Sama_1303	0.24	-0.9
1,587,551	-		Sama_1303	0.25	-1.8
1,587,551	-		Sama_1303	0.25	+1.7
1,587,708	+		Sama_1303	0.42	-2.1
1,587,708	+		Sama_1303	0.42	+0.1
1,587,708	+		Sama_1303	0.42	+0.2
1,587,708	+		Sama_1303	0.42	+0.6
1,587,709	-		Sama_1303	0.42	+0.7
1,587,709	-		Sama_1303	0.42	+0.3
1,587,709	-		Sama_1303	0.42	-1.7
1,587,709	-		Sama_1303	0.42	-2.1
1,587,709	-		Sama_1303	0.42	-1.1
1,587,709	-		Sama_1303	0.42	-1.7
1,587,718	-		Sama_1303	0.43	-1.8
1,587,786	+		Sama_1303	0.50	-1.3
1,587,787	-		Sama_1303	0.50	-1.1
1,587,787	-		Sama_1303	0.50	-2.3
1,587,789	-		Sama_1303	0.50	-0.6
1,587,834	-		Sama_1303	0.55	+0.3
1,587,983	+		Sama_1303	0.70	-0.6
1,587,983	+		Sama_1303	0.70	-0.4
1,587,984	-		Sama_1303	0.70	-1.5
1,587,984	-		Sama_1303	0.70	+0.3
1,588,052	+		Sama_1303	0.77	+0.4
1,588,053	-		Sama_1303	0.77	+0.9
1,588,119	+		Sama_1303	0.84	+0.9
1,588,123	-		Sama_1303	0.84	-1.6
1,588,139	+		Sama_1303	0.86	-0.7
1,588,139	+		Sama_1303	0.86	+1.3
1,588,139	+		Sama_1303	0.86	+0.1
1,588,140	-		Sama_1303	0.86	-0.3
1,588,140	-		Sama_1303	0.86	-0.2
1,588,140	-		Sama_1303	0.86	-1.7
1,588,140	-		Sama_1303	0.86	+1.1
1,588,140	-		Sama_1303	0.86	+1.4
1,588,140	-		Sama_1303	0.86	+1.4
1,588,182	+				+0.2
1,588,249	+				-1.1
1,588,278	+				+0.7
1,588,284	+				-2.6
1,588,374	+				-0.7
1,588,375	-				+0.1
1,588,375	-				+0.1
1,588,375	-				-0.6
1,588,384	+				-0.1
1,588,475	-				+1.4
1,588,538	+				-1.4
1,588,538	+				+0.9
1,588,538	+				+0.1
1,588,538	+				-0.1
1,588,539	-				-0.1
1,588,539	-				+1.1
1,588,539	-				+0.3
1,588,680	-		Sama_1304	0.32	-0.7
1,588,680	-		Sama_1304	0.32	-0.1
1,588,727	+		Sama_1304	0.42	+0.3
1,588,742	+		Sama_1304	0.46	-1.4
1,588,775	+		Sama_1304	0.53	-1.0
1,588,775	+		Sama_1304	0.53	+3.7
1,588,775	+		Sama_1304	0.53	+1.0
1,588,775	+		Sama_1304	0.53	+0.4
1,588,775	+		Sama_1304	0.53	-0.6
1,588,790	+		Sama_1304	0.57	+1.1
1,588,790	+		Sama_1304	0.57	-2.0
1,588,791	-		Sama_1304	0.57	-2.5
1,588,791	-		Sama_1304	0.57	+0.2
1,588,791	-		Sama_1304	0.57	+1.2
1,588,791	-		Sama_1304	0.57	+1.4
1,588,847	+		Sama_1304	0.69	-1.6
1,588,847	+		Sama_1304	0.69	-0.3
1,588,919	+		Sama_1304	0.86	-0.0
1,588,919	+		Sama_1304	0.86	+0.3
1,588,919	+		Sama_1304	0.86	-2.4
1,588,919	+		Sama_1304	0.86	+1.2
1,589,023	-				-2.4
1,589,052	+				-0.7
1,589,053	-				+1.4
1,589,170	+		Sama_1305	0.15	-0.3
1,589,170	+		Sama_1305	0.15	-0.9
1,589,171	-		Sama_1305	0.15	-0.4
1,589,175	-		Sama_1305	0.16	+0.9
1,589,272	+		Sama_1305	0.27	-0.4