Strain Fitness in Shewanella amazonensis SB2B around Sama_0991

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,197,515	-		Sama_0988	0.84	-2.0
1,197,545	+		Sama_0988	0.87	-1.1
1,197,584	+				+1.3
1,197,584	+				-1.5
1,197,584	+				+1.5
1,197,605	+				+0.6
1,197,605	+				-0.4
1,197,605	+				+0.9
1,197,606	-				-1.3
1,197,614	+				-1.8
1,197,614	+				+0.1
1,197,614	+				-0.3
1,197,615	-				-0.0
1,197,615	-				+1.4
1,197,615	-				-0.4
1,197,632	+				-0.4
1,197,779	+		Sama_0989	0.38	-0.6
1,197,791	+		Sama_0989	0.45	-2.7
1,197,792	-		Sama_0989	0.45	-0.9
1,197,818	+		Sama_0989	0.61	+0.4
1,197,826	-		Sama_0989	0.66	+0.8
1,197,833	+		Sama_0989	0.70	-2.3
1,197,834	-		Sama_0989	0.71	+0.7
1,197,916	-				-1.0
1,197,974	-				+0.8
1,198,019	-				+0.1
1,198,019	-				-2.4
1,198,029	+				+1.6
1,198,029	+				+0.8
1,198,089	+		Sama_0990	0.23	+2.0
1,198,089	+		Sama_0990	0.23	-0.0
1,198,089	+		Sama_0990	0.23	-2.9
1,198,089	+		Sama_0990	0.23	-2.1
1,198,089	+		Sama_0990	0.23	+0.5
1,198,089	+		Sama_0990	0.23	-2.0
1,198,089	+		Sama_0990	0.23	+0.3
1,198,089	+		Sama_0990	0.23	-1.4
1,198,089	+		Sama_0990	0.23	+0.7
1,198,089	+		Sama_0990	0.23	-1.6
1,198,089	+		Sama_0990	0.23	-1.2
1,198,089	+		Sama_0990	0.23	-1.6
1,198,089	+		Sama_0990	0.23	-1.4
1,198,089	+		Sama_0990	0.23	+0.6
1,198,089	+		Sama_0990	0.23	-0.7
1,198,089	+		Sama_0990	0.23	-2.3
1,198,090	-		Sama_0990	0.23	-2.9
1,198,090	-		Sama_0990	0.23	-1.1
1,198,090	-		Sama_0990	0.23	-0.7
1,198,090	-		Sama_0990	0.23	+0.2
1,198,090	-		Sama_0990	0.23	-2.3
1,198,090	-		Sama_0990	0.23	-1.4
1,198,090	-		Sama_0990	0.23	+1.7
1,198,090	-		Sama_0990	0.23	-0.6
1,198,090	-		Sama_0990	0.23	+0.8
1,198,090	-		Sama_0990	0.23	+0.2
1,198,090	-		Sama_0990	0.23	-0.4
1,198,090	-		Sama_0990	0.23	-0.7
1,198,090	-		Sama_0990	0.23	-0.7
1,198,096	+		Sama_0990	0.24	+0.4
1,198,096	+		Sama_0990	0.24	+1.4
1,198,097	-		Sama_0990	0.25	-2.2
1,198,097	-		Sama_0990	0.25	-1.0
1,198,097	-		Sama_0990	0.25	-0.7
1,198,111	-		Sama_0990	0.28	+2.6
1,198,143	+		Sama_0990	0.35	-0.5
1,198,186	-		Sama_0990	0.46	-0.6
1,198,186	-		Sama_0990	0.46	-0.2
1,198,218	+		Sama_0990	0.53	+3.6
1,198,218	+		Sama_0990	0.53	-0.3
1,198,428	+				-0.4
1,198,428	+				-1.4
1,198,429	-				-1.1
1,198,448	+				-1.2
1,198,448	+				+2.0
1,198,448	+				+0.4
1,198,448	+				-0.7
1,198,448	+				-0.6
1,198,448	+				+3.3
1,198,448	+				-1.6
1,198,448	+				-0.4
1,198,448	+				+0.5
1,198,449	-				+1.2
1,198,449	-				+1.7
1,198,449	-				-0.4
1,198,449	-				+0.9
1,198,449	-				-0.1
1,198,449	-				+2.1
1,198,449	-				+0.2
1,198,449	-				-0.2
1,198,449	-				-1.2
1,198,450	+				-3.1
1,198,450	+				-0.4
1,198,451	-				+1.2
1,198,451	-				+0.7
1,198,451	-				+0.2
1,198,490	+				+0.7
1,198,490	+				-2.0
1,198,490	+				+0.4
1,198,491	-				-0.6
1,198,491	-				+1.0
1,198,514	-				-1.0
1,198,614	+				-1.3
1,198,614	+				-0.6
1,198,643	-		Sama_0991	0.11	-1.8
1,198,643	-		Sama_0991	0.11	-0.1
1,198,643	-		Sama_0991	0.11	+0.8
1,198,643	-		Sama_0991	0.11	-0.7
1,198,643	-		Sama_0991	0.11	+0.6
1,198,651	+		Sama_0991	0.11	+0.1
1,198,651	+		Sama_0991	0.11	+0.2
1,198,652	-		Sama_0991	0.11	+0.9
1,198,688	+		Sama_0991	0.13	+0.1
1,198,703	+		Sama_0991	0.14	-1.9
1,198,704	-		Sama_0991	0.14	-0.0
1,198,704	-		Sama_0991	0.14	+2.4
1,198,723	-		Sama_0991	0.15	+2.4
1,198,733	-		Sama_0991	0.16	+0.6
1,198,733	-		Sama_0991	0.16	+0.2
1,198,860	+		Sama_0991	0.23	+1.8
1,198,861	-		Sama_0991	0.23	-0.4
1,198,861	-		Sama_0991	0.23	-0.0
1,198,894	+		Sama_0991	0.25	-1.2
1,198,895	-		Sama_0991	0.25	-1.2
1,198,895	-		Sama_0991	0.25	-1.6
1,198,969	+		Sama_0991	0.29	-0.5
1,198,969	+		Sama_0991	0.29	-0.7
1,198,969	+		Sama_0991	0.29	-2.2
1,199,057	+		Sama_0991	0.34	-0.7
1,199,058	-		Sama_0991	0.34	-1.9
1,199,058	-		Sama_0991	0.34	-2.1
1,199,059	+		Sama_0991	0.34	-1.4
1,199,060	-		Sama_0991	0.35	-0.2
1,199,060	-		Sama_0991	0.35	-1.6
1,199,060	-		Sama_0991	0.35	-0.7
1,199,094	-		Sama_0991	0.36	-2.0
1,199,124	+		Sama_0991	0.38	-1.0
1,199,125	-		Sama_0991	0.38	+1.4
1,199,164	+		Sama_0991	0.40	-2.1
1,199,164	+		Sama_0991	0.40	-0.0
1,199,164	+		Sama_0991	0.40	-1.6
1,199,165	-		Sama_0991	0.40	-1.7
1,199,165	-		Sama_0991	0.40	-0.9
1,199,184	+		Sama_0991	0.42	-0.7
1,199,184	+		Sama_0991	0.42	+1.9
1,199,184	+		Sama_0991	0.42	-0.3
1,199,184	+		Sama_0991	0.42	+0.8
1,199,185	-		Sama_0991	0.42	+0.2
1,199,187	-		Sama_0991	0.42	+0.2
1,199,204	+		Sama_0991	0.43	-2.7
1,199,285	-		Sama_0991	0.47	+2.2
1,199,290	+		Sama_0991	0.48	-0.2
1,199,290	+		Sama_0991	0.48	-0.7
1,199,290	+		Sama_0991	0.48	+2.1
1,199,290	+		Sama_0991	0.48	-0.0
1,199,291	-		Sama_0991	0.48	-1.2
1,199,291	-		Sama_0991	0.48	+0.3
1,199,291	-		Sama_0991	0.48	-0.4
1,199,291	-		Sama_0991	0.48	+0.3
1,199,291	-		Sama_0991	0.48	+1.0
1,199,393	+		Sama_0991	0.53	+1.0
1,199,393	+		Sama_0991	0.53	-1.6
1,199,393	+		Sama_0991	0.53	-1.9
1,199,393	+		Sama_0991	0.53	+1.6
1,199,394	-		Sama_0991	0.53	+1.1
1,199,508	+		Sama_0991	0.60	+1.1
1,199,514	+		Sama_0991	0.60	+0.9
1,199,514	+		Sama_0991	0.60	-1.3
1,199,514	+		Sama_0991	0.60	+1.0
1,199,514	+		Sama_0991	0.60	-0.5
1,199,515	-		Sama_0991	0.60	+1.8
1,199,515	-		Sama_0991	0.60	-0.7
1,199,515	-		Sama_0991	0.60	-2.0
1,199,515	-		Sama_0991	0.60	-1.7
1,199,515	-		Sama_0991	0.60	-0.9
1,199,581	+		Sama_0991	0.64	-2.2
1,199,581	+		Sama_0991	0.64	-3.3
1,199,599	+		Sama_0991	0.65	-0.4
1,199,600	-		Sama_0991	0.65	+0.1
1,199,600	-		Sama_0991	0.65	+0.8
1,199,744	+		Sama_0991	0.73	-0.0
1,199,744	+		Sama_0991	0.73	-0.0
1,199,745	-		Sama_0991	0.73	-0.9
1,199,745	-		Sama_0991	0.73	+0.8
1,199,745	-		Sama_0991	0.73	-1.2
1,199,917	-		Sama_0991	0.83	+2.7
1,199,943	+		Sama_0991	0.85	+0.1
1,199,943	+		Sama_0991	0.85	-2.2
1,199,944	-		Sama_0991	0.85	-0.6
1,199,944	-		Sama_0991	0.85	-0.5
1,199,944	-		Sama_0991	0.85	-0.2
1,199,987	+		Sama_0991	0.87	-1.9
1,199,987	+		Sama_0991	0.87	+0.8
1,199,987	+		Sama_0991	0.87	-0.4
1,199,988	-		Sama_0991	0.87	+0.3
1,199,988	-		Sama_0991	0.87	-2.4
1,199,988	-		Sama_0991	0.87	-2.7
1,199,990	+		Sama_0991	0.87	+0.7
1,199,991	-		Sama_0991	0.87	-0.7
1,199,991	-		Sama_0991	0.87	+1.7
1,200,014	+		Sama_0991	0.89	-0.7
1,200,014	+		Sama_0991	0.89	-1.6
1,200,015	-		Sama_0991	0.89	+0.6
1,200,015	-		Sama_0991	0.89	-0.2
1,200,015	-		Sama_0991	0.89	-1.0
1,200,058	-				-0.2
1,200,058	-				+1.3
1,200,058	-				+0.3
1,200,058	-				+0.3
1,200,068	+				+0.6
1,200,095	+				+0.6
1,200,115	-				-2.9
1,200,115	-				+1.4
1,200,187	-				+0.6
1,200,194	+				-1.4
1,200,195	-				-0.7
1,200,195	-				+0.2
1,200,198	+				-2.1
1,200,198	+				-1.4
1,200,198	+				+2.7
1,200,199	-				+0.4
1,200,199	-				-1.2
1,200,203	+				-0.4
1,200,354	+		Sama_0992	0.15	+0.6
1,200,386	+		Sama_0992	0.19	-0.5
1,200,386	+		Sama_0992	0.19	-1.1
1,200,386	+		Sama_0992	0.19	-0.4
1,200,386	+		Sama_0992	0.19	-0.7
1,200,489	-		Sama_0992	0.31	-1.4
1,200,534	-		Sama_0992	0.36	-0.4
1,200,534	-		Sama_0992	0.36	-0.4
1,200,534	-		Sama_0992	0.36	-1.4
1,200,558	-		Sama_0992	0.39	+0.6
1,200,614	+		Sama_0992	0.46	+0.7
1,200,614	+		Sama_0992	0.46	+0.4
1,200,691	+		Sama_0992	0.55	-0.2
1,200,691	+		Sama_0992	0.55	-1.4
1,200,691	+		Sama_0992	0.55	+0.7
1,200,692	-		Sama_0992	0.55	+1.4
1,200,692	-		Sama_0992	0.55	-2.4
1,200,800	+		Sama_0992	0.68	-2.0
1,200,906	+		Sama_0992	0.80	-0.6
1,200,907	-		Sama_0992	0.80	-0.1
1,200,932	+		Sama_0992	0.83	+1.4
1,200,938	+		Sama_0992	0.84	-1.4
1,200,939	-		Sama_0992	0.84	+1.2
1,200,985	-		Sama_0992	0.89	-0.0
1,200,994	+				+0.1
1,200,994	+				+1.0
1,200,994	+				+2.0
1,200,995	-				-0.2
1,200,995	-				-0.3
1,200,995	-				+0.1
1,200,995	-				+2.4
1,200,995	-				-1.6
1,201,100	+				+0.8
1,201,100	+				-1.2
1,201,100	+				+0.0
1,201,100	+				-2.4
1,201,100	+				-1.9
1,201,101	-				-1.9
1,201,101	-				+1.4
1,201,101	-				-0.4
1,201,101	-				-0.4
1,201,107	+				+0.1
1,201,107	+				+0.6
1,201,107	+				+3.3
1,201,107	+				+1.8
1,201,108	-				-0.4
1,201,108	-				-0.2
1,201,161	+				+0.1
1,201,161	+				-0.3