Strain Fitness in Shewanella amazonensis SB2B around Sama_0990

Experiment: Motility assay, center cut sample 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0988 and Sama_0989 are separated by 18 nucleotidesSama_0989 and Sama_0990 are separated by 111 nucleotidesSama_0990 and Sama_0991 are separated by 36 nucleotides Sama_0988: Sama_0988 - tetraheme cytochrome c (RefSeq), at 1,196,523 to 1,197,698 _0988 Sama_0989: Sama_0989 - warning TorE protein (RefSeq), at 1,197,717 to 1,197,881 _0989 Sama_0990: Sama_0990 - acetoin utilization protein AcuB, putative (RefSeq), at 1,197,993 to 1,198,415 _0990 Sama_0991: Sama_0991 - acyltransferase family protein (RefSeq), at 1,198,452 to 1,200,212 _0991 Position (kb) 1197 1198 1199Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1197.040 kb on + strand, within Sama_0988at 1197.040 kb on + strand, within Sama_0988at 1197.040 kb on + strand, within Sama_0988at 1197.041 kb on - strand, within Sama_0988at 1197.041 kb on - strand, within Sama_0988at 1197.041 kb on - strand, within Sama_0988at 1197.041 kb on - strand, within Sama_0988at 1197.067 kb on + strand, within Sama_0988at 1197.067 kb on + strand, within Sama_0988at 1197.068 kb on - strand, within Sama_0988at 1197.078 kb on + strand, within Sama_0988at 1197.079 kb on - strand, within Sama_0988at 1197.079 kb on - strand, within Sama_0988at 1197.102 kb on + strand, within Sama_0988at 1197.103 kb on - strand, within Sama_0988at 1197.387 kb on + strand, within Sama_0988at 1197.387 kb on + strand, within Sama_0988at 1197.387 kb on + strand, within Sama_0988at 1197.387 kb on + strand, within Sama_0988at 1197.388 kb on - strand, within Sama_0988at 1197.388 kb on - strand, within Sama_0988at 1197.388 kb on - strand, within Sama_0988at 1197.388 kb on - strand, within Sama_0988at 1197.515 kb on - strand, within Sama_0988at 1197.545 kb on + strand, within Sama_0988at 1197.584 kb on + strandat 1197.584 kb on + strandat 1197.584 kb on + strandat 1197.605 kb on + strandat 1197.605 kb on + strandat 1197.605 kb on + strandat 1197.606 kb on - strandat 1197.614 kb on + strandat 1197.614 kb on + strandat 1197.614 kb on + strandat 1197.615 kb on - strandat 1197.615 kb on - strandat 1197.615 kb on - strandat 1197.632 kb on + strandat 1197.779 kb on + strand, within Sama_0989at 1197.791 kb on + strand, within Sama_0989at 1197.792 kb on - strand, within Sama_0989at 1197.818 kb on + strand, within Sama_0989at 1197.826 kb on - strand, within Sama_0989at 1197.833 kb on + strand, within Sama_0989at 1197.834 kb on - strand, within Sama_0989at 1197.916 kb on - strandat 1197.974 kb on - strandat 1198.019 kb on - strandat 1198.019 kb on - strandat 1198.029 kb on + strandat 1198.029 kb on + strandat 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.089 kb on + strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.090 kb on - strand, within Sama_0990at 1198.096 kb on + strand, within Sama_0990at 1198.096 kb on + strand, within Sama_0990at 1198.097 kb on - strand, within Sama_0990at 1198.097 kb on - strand, within Sama_0990at 1198.097 kb on - strand, within Sama_0990at 1198.111 kb on - strand, within Sama_0990at 1198.143 kb on + strand, within Sama_0990at 1198.186 kb on - strand, within Sama_0990at 1198.186 kb on - strand, within Sama_0990at 1198.218 kb on + strand, within Sama_0990at 1198.218 kb on + strand, within Sama_0990at 1198.428 kb on + strandat 1198.428 kb on + strandat 1198.429 kb on - strandat 1198.448 kb on + strandat 1198.448 kb on + strandat 1198.448 kb on + strandat 1198.448 kb on + strandat 1198.448 kb on + strandat 1198.448 kb on + strandat 1198.448 kb on + strandat 1198.448 kb on + strandat 1198.448 kb on + strandat 1198.449 kb on - strandat 1198.449 kb on - strandat 1198.449 kb on - strandat 1198.449 kb on - strandat 1198.449 kb on - strandat 1198.449 kb on - strandat 1198.449 kb on - strandat 1198.449 kb on - strandat 1198.449 kb on - strandat 1198.450 kb on + strandat 1198.450 kb on + strandat 1198.451 kb on - strandat 1198.451 kb on - strandat 1198.451 kb on - strandat 1198.490 kb on + strandat 1198.490 kb on + strandat 1198.490 kb on + strandat 1198.491 kb on - strandat 1198.491 kb on - strandat 1198.514 kb on - strandat 1198.614 kb on + strandat 1198.614 kb on + strandat 1198.643 kb on - strand, within Sama_0991at 1198.643 kb on - strand, within Sama_0991at 1198.643 kb on - strand, within Sama_0991at 1198.643 kb on - strand, within Sama_0991at 1198.643 kb on - strand, within Sama_0991at 1198.651 kb on + strand, within Sama_0991at 1198.651 kb on + strand, within Sama_0991at 1198.652 kb on - strand, within Sama_0991at 1198.688 kb on + strand, within Sama_0991at 1198.703 kb on + strand, within Sama_0991at 1198.704 kb on - strand, within Sama_0991at 1198.704 kb on - strand, within Sama_0991at 1198.723 kb on - strand, within Sama_0991at 1198.733 kb on - strand, within Sama_0991at 1198.733 kb on - strand, within Sama_0991at 1198.860 kb on + strand, within Sama_0991at 1198.861 kb on - strand, within Sama_0991at 1198.861 kb on - strand, within Sama_0991at 1198.894 kb on + strand, within Sama_0991at 1198.895 kb on - strand, within Sama_0991at 1198.895 kb on - strand, within Sama_0991at 1198.969 kb on + strand, within Sama_0991at 1198.969 kb on + strand, within Sama_0991at 1198.969 kb on + strand, within Sama_0991at 1199.057 kb on + strand, within Sama_0991at 1199.058 kb on - strand, within Sama_0991at 1199.058 kb on - strand, within Sama_0991at 1199.059 kb on + strand, within Sama_0991at 1199.060 kb on - strand, within Sama_0991at 1199.060 kb on - strand, within Sama_0991at 1199.060 kb on - strand, within Sama_0991at 1199.094 kb on - strand, within Sama_0991at 1199.124 kb on + strand, within Sama_0991at 1199.125 kb on - strand, within Sama_0991at 1199.164 kb on + strand, within Sama_0991at 1199.164 kb on + strand, within Sama_0991at 1199.164 kb on + strand, within Sama_0991at 1199.165 kb on - strand, within Sama_0991at 1199.165 kb on - strand, within Sama_0991at 1199.184 kb on + strand, within Sama_0991at 1199.184 kb on + strand, within Sama_0991at 1199.184 kb on + strand, within Sama_0991at 1199.184 kb on + strand, within Sama_0991at 1199.185 kb on - strand, within Sama_0991at 1199.187 kb on - strand, within Sama_0991at 1199.204 kb on + strand, within Sama_0991at 1199.285 kb on - strand, within Sama_0991at 1199.290 kb on + strand, within Sama_0991at 1199.290 kb on + strand, within Sama_0991at 1199.290 kb on + strand, within Sama_0991at 1199.290 kb on + strand, within Sama_0991at 1199.291 kb on - strand, within Sama_0991at 1199.291 kb on - strand, within Sama_0991at 1199.291 kb on - strand, within Sama_0991at 1199.291 kb on - strand, within Sama_0991at 1199.291 kb on - strand, within Sama_0991at 1199.393 kb on + strand, within Sama_0991at 1199.393 kb on + strand, within Sama_0991at 1199.393 kb on + strand, within Sama_0991at 1199.393 kb on + strand, within Sama_0991at 1199.394 kb on - strand, within Sama_0991

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2
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1,197,040 + Sama_0988 0.44 +0.8
1,197,040 + Sama_0988 0.44 -1.6
1,197,040 + Sama_0988 0.44 +0.4
1,197,041 - Sama_0988 0.44 +0.9
1,197,041 - Sama_0988 0.44 +0.6
1,197,041 - Sama_0988 0.44 +1.4
1,197,041 - Sama_0988 0.44 -1.2
1,197,067 + Sama_0988 0.46 +1.2
1,197,067 + Sama_0988 0.46 -1.6
1,197,068 - Sama_0988 0.46 +1.3
1,197,078 + Sama_0988 0.47 +0.5
1,197,079 - Sama_0988 0.47 -0.9
1,197,079 - Sama_0988 0.47 -1.6
1,197,102 + Sama_0988 0.49 +1.4
1,197,103 - Sama_0988 0.49 +0.4
1,197,387 + Sama_0988 0.73 -1.0
1,197,387 + Sama_0988 0.73 +0.3
1,197,387 + Sama_0988 0.73 +0.5
1,197,387 + Sama_0988 0.73 +3.5
1,197,388 - Sama_0988 0.74 -1.7
1,197,388 - Sama_0988 0.74 -3.2
1,197,388 - Sama_0988 0.74 -0.2
1,197,388 - Sama_0988 0.74 +0.6
1,197,515 - Sama_0988 0.84 -2.0
1,197,545 + Sama_0988 0.87 -1.1
1,197,584 + +1.3
1,197,584 + -1.5
1,197,584 + +1.5
1,197,605 + +0.6
1,197,605 + -0.4
1,197,605 + +0.9
1,197,606 - -1.3
1,197,614 + -1.8
1,197,614 + +0.1
1,197,614 + -0.3
1,197,615 - -0.0
1,197,615 - +1.4
1,197,615 - -0.4
1,197,632 + -0.4
1,197,779 + Sama_0989 0.38 -0.6
1,197,791 + Sama_0989 0.45 -2.7
1,197,792 - Sama_0989 0.45 -0.9
1,197,818 + Sama_0989 0.61 +0.4
1,197,826 - Sama_0989 0.66 +0.8
1,197,833 + Sama_0989 0.70 -2.3
1,197,834 - Sama_0989 0.71 +0.7
1,197,916 - -1.0
1,197,974 - +0.8
1,198,019 - +0.1
1,198,019 - -2.4
1,198,029 + +1.6
1,198,029 + +0.8
1,198,089 + Sama_0990 0.23 +2.0
1,198,089 + Sama_0990 0.23 -0.0
1,198,089 + Sama_0990 0.23 -2.9
1,198,089 + Sama_0990 0.23 -2.1
1,198,089 + Sama_0990 0.23 +0.5
1,198,089 + Sama_0990 0.23 -2.0
1,198,089 + Sama_0990 0.23 +0.3
1,198,089 + Sama_0990 0.23 -1.4
1,198,089 + Sama_0990 0.23 +0.7
1,198,089 + Sama_0990 0.23 -1.6
1,198,089 + Sama_0990 0.23 -1.2
1,198,089 + Sama_0990 0.23 -1.6
1,198,089 + Sama_0990 0.23 -1.4
1,198,089 + Sama_0990 0.23 +0.6
1,198,089 + Sama_0990 0.23 -0.7
1,198,089 + Sama_0990 0.23 -2.3
1,198,090 - Sama_0990 0.23 -2.9
1,198,090 - Sama_0990 0.23 -1.1
1,198,090 - Sama_0990 0.23 -0.7
1,198,090 - Sama_0990 0.23 +0.2
1,198,090 - Sama_0990 0.23 -2.3
1,198,090 - Sama_0990 0.23 -1.4
1,198,090 - Sama_0990 0.23 +1.7
1,198,090 - Sama_0990 0.23 -0.6
1,198,090 - Sama_0990 0.23 +0.8
1,198,090 - Sama_0990 0.23 +0.2
1,198,090 - Sama_0990 0.23 -0.4
1,198,090 - Sama_0990 0.23 -0.7
1,198,090 - Sama_0990 0.23 -0.7
1,198,096 + Sama_0990 0.24 +0.4
1,198,096 + Sama_0990 0.24 +1.4
1,198,097 - Sama_0990 0.25 -2.2
1,198,097 - Sama_0990 0.25 -1.0
1,198,097 - Sama_0990 0.25 -0.7
1,198,111 - Sama_0990 0.28 +2.6
1,198,143 + Sama_0990 0.35 -0.5
1,198,186 - Sama_0990 0.46 -0.6
1,198,186 - Sama_0990 0.46 -0.2
1,198,218 + Sama_0990 0.53 +3.6
1,198,218 + Sama_0990 0.53 -0.3
1,198,428 + -0.4
1,198,428 + -1.4
1,198,429 - -1.1
1,198,448 + -1.2
1,198,448 + +2.0
1,198,448 + +0.4
1,198,448 + -0.7
1,198,448 + -0.6
1,198,448 + +3.3
1,198,448 + -1.6
1,198,448 + -0.4
1,198,448 + +0.5
1,198,449 - +1.2
1,198,449 - +1.7
1,198,449 - -0.4
1,198,449 - +0.9
1,198,449 - -0.1
1,198,449 - +2.1
1,198,449 - +0.2
1,198,449 - -0.2
1,198,449 - -1.2
1,198,450 + -3.1
1,198,450 + -0.4
1,198,451 - +1.2
1,198,451 - +0.7
1,198,451 - +0.2
1,198,490 + +0.7
1,198,490 + -2.0
1,198,490 + +0.4
1,198,491 - -0.6
1,198,491 - +1.0
1,198,514 - -1.0
1,198,614 + -1.3
1,198,614 + -0.6
1,198,643 - Sama_0991 0.11 -1.8
1,198,643 - Sama_0991 0.11 -0.1
1,198,643 - Sama_0991 0.11 +0.8
1,198,643 - Sama_0991 0.11 -0.7
1,198,643 - Sama_0991 0.11 +0.6
1,198,651 + Sama_0991 0.11 +0.1
1,198,651 + Sama_0991 0.11 +0.2
1,198,652 - Sama_0991 0.11 +0.9
1,198,688 + Sama_0991 0.13 +0.1
1,198,703 + Sama_0991 0.14 -1.9
1,198,704 - Sama_0991 0.14 -0.0
1,198,704 - Sama_0991 0.14 +2.4
1,198,723 - Sama_0991 0.15 +2.4
1,198,733 - Sama_0991 0.16 +0.6
1,198,733 - Sama_0991 0.16 +0.2
1,198,860 + Sama_0991 0.23 +1.8
1,198,861 - Sama_0991 0.23 -0.4
1,198,861 - Sama_0991 0.23 -0.0
1,198,894 + Sama_0991 0.25 -1.2
1,198,895 - Sama_0991 0.25 -1.2
1,198,895 - Sama_0991 0.25 -1.6
1,198,969 + Sama_0991 0.29 -0.5
1,198,969 + Sama_0991 0.29 -0.7
1,198,969 + Sama_0991 0.29 -2.2
1,199,057 + Sama_0991 0.34 -0.7
1,199,058 - Sama_0991 0.34 -1.9
1,199,058 - Sama_0991 0.34 -2.1
1,199,059 + Sama_0991 0.34 -1.4
1,199,060 - Sama_0991 0.35 -0.2
1,199,060 - Sama_0991 0.35 -1.6
1,199,060 - Sama_0991 0.35 -0.7
1,199,094 - Sama_0991 0.36 -2.0
1,199,124 + Sama_0991 0.38 -1.0
1,199,125 - Sama_0991 0.38 +1.4
1,199,164 + Sama_0991 0.40 -2.1
1,199,164 + Sama_0991 0.40 -0.0
1,199,164 + Sama_0991 0.40 -1.6
1,199,165 - Sama_0991 0.40 -1.7
1,199,165 - Sama_0991 0.40 -0.9
1,199,184 + Sama_0991 0.42 -0.7
1,199,184 + Sama_0991 0.42 +1.9
1,199,184 + Sama_0991 0.42 -0.3
1,199,184 + Sama_0991 0.42 +0.8
1,199,185 - Sama_0991 0.42 +0.2
1,199,187 - Sama_0991 0.42 +0.2
1,199,204 + Sama_0991 0.43 -2.7
1,199,285 - Sama_0991 0.47 +2.2
1,199,290 + Sama_0991 0.48 -0.2
1,199,290 + Sama_0991 0.48 -0.7
1,199,290 + Sama_0991 0.48 +2.1
1,199,290 + Sama_0991 0.48 -0.0
1,199,291 - Sama_0991 0.48 -1.2
1,199,291 - Sama_0991 0.48 +0.3
1,199,291 - Sama_0991 0.48 -0.4
1,199,291 - Sama_0991 0.48 +0.3
1,199,291 - Sama_0991 0.48 +1.0
1,199,393 + Sama_0991 0.53 +1.0
1,199,393 + Sama_0991 0.53 -1.6
1,199,393 + Sama_0991 0.53 -1.9
1,199,393 + Sama_0991 0.53 +1.6
1,199,394 - Sama_0991 0.53 +1.1

Or see this region's nucleotide sequence