Strain Fitness in Shewanella amazonensis SB2B around Sama_0987

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,193,119	-				-1.2
1,193,119	-				-0.6
1,193,119	-				-0.0
1,193,194	-				-0.1
1,193,215	+				-0.4
1,193,260	+				-0.4
1,193,260	+				-0.6
1,193,260	+				-0.1
1,193,261	-				-1.2
1,193,316	+				+0.4
1,193,316	+				-0.9
1,193,316	+				-1.7
1,193,317	-				-0.0
1,193,335	+				-3.3
1,193,359	+				+2.4
1,193,359	+				-1.4
1,193,359	+				-1.0
1,193,379	+				+1.0
1,193,379	+				+0.3
1,193,379	+				-1.2
1,193,380	-				-2.1
1,193,438	+	torD	Sama_0986	0.17	-0.7
1,193,438	+	torD	Sama_0986	0.17	+0.1
1,193,439	-	torD	Sama_0986	0.18	-2.1
1,193,439	-	torD	Sama_0986	0.18	+2.6
1,193,580	+	torD	Sama_0986	0.37	+0.6
1,193,580	+	torD	Sama_0986	0.37	-0.9
1,193,581	-	torD	Sama_0986	0.38	+1.8
1,193,581	-	torD	Sama_0986	0.38	+2.2
1,193,581	-	torD	Sama_0986	0.38	-0.7
1,193,611	-	torD	Sama_0986	0.42	+0.8
1,193,645	-	torD	Sama_0986	0.47	-2.3
1,193,649	+	torD	Sama_0986	0.47	-1.6
1,193,694	+	torD	Sama_0986	0.54	+1.6
1,193,695	-	torD	Sama_0986	0.54	+0.6
1,193,695	-	torD	Sama_0986	0.54	+2.0
1,193,802	+	torD	Sama_0986	0.69	+0.2
1,193,802	+	torD	Sama_0986	0.69	-2.3
1,193,802	+	torD	Sama_0986	0.69	+1.3
1,193,803	-	torD	Sama_0986	0.69	+1.6
1,193,803	-	torD	Sama_0986	0.69	-0.1
1,193,806	+	torD	Sama_0986	0.69	-2.1
1,193,806	+	torD	Sama_0986	0.69	-2.7
1,193,806	+	torD	Sama_0986	0.69	-1.3
1,193,806	+	torD	Sama_0986	0.69	+1.0
1,193,806	+	torD	Sama_0986	0.69	-0.6
1,193,806	+	torD	Sama_0986	0.69	-2.3
1,193,806	+	torD	Sama_0986	0.69	-2.7
1,193,806	+	torD	Sama_0986	0.69	+0.8
1,193,806	+	torD	Sama_0986	0.69	-1.0
1,193,807	-	torD	Sama_0986	0.69	-1.3
1,193,807	-	torD	Sama_0986	0.69	-1.0
1,193,807	-	torD	Sama_0986	0.69	+3.2
1,193,807	-	torD	Sama_0986	0.69	-2.3
1,193,807	-	torD	Sama_0986	0.69	-1.6
1,193,807	-	torD	Sama_0986	0.69	+0.9
1,193,807	-	torD	Sama_0986	0.69	+1.6
1,193,945	+	torD	Sama_0986	0.89	-2.8
1,193,945	+	torD	Sama_0986	0.89	+1.8
1,193,945	+	torD	Sama_0986	0.89	-1.1
1,194,107	+				-0.6
1,194,107	+				-1.5
1,194,107	+				+1.4
1,194,107	+				-0.6
1,194,107	+				-2.4
1,194,108	-				-1.6
1,194,138	+				+0.6
1,194,138	+				-0.4
1,194,138	+				+0.2
1,194,139	-				-0.9
1,194,139	-				-0.1
1,194,139	-				+3.0
1,194,237	-				-0.6
1,194,255	+				-0.8
1,194,334	+		Sama_0987	0.13	-1.6
1,194,334	+		Sama_0987	0.13	-1.7
1,194,335	-		Sama_0987	0.13	+0.5
1,194,335	-		Sama_0987	0.13	-1.6
1,194,335	-		Sama_0987	0.13	+2.7
1,194,383	+		Sama_0987	0.15	+1.5
1,194,383	+		Sama_0987	0.15	-1.4
1,194,383	+		Sama_0987	0.15	-1.7
1,194,384	-		Sama_0987	0.15	-2.1
1,194,384	-		Sama_0987	0.15	+1.4
1,194,402	+		Sama_0987	0.15	-1.4
1,194,403	-		Sama_0987	0.15	+0.3
1,194,408	+		Sama_0987	0.16	+1.7
1,194,408	+		Sama_0987	0.16	-0.6
1,194,408	+		Sama_0987	0.16	-1.2
1,194,408	+		Sama_0987	0.16	+0.3
1,194,408	+		Sama_0987	0.16	-0.5
1,194,408	+		Sama_0987	0.16	+0.3
1,194,409	-		Sama_0987	0.16	+2.2
1,194,409	-		Sama_0987	0.16	-0.6
1,194,410	+		Sama_0987	0.16	+0.6
1,194,410	+		Sama_0987	0.16	-2.0
1,194,410	+		Sama_0987	0.16	+0.2
1,194,410	+		Sama_0987	0.16	+0.6
1,194,410	+		Sama_0987	0.16	-1.0
1,194,410	+		Sama_0987	0.16	-2.1
1,194,410	+		Sama_0987	0.16	+0.3
1,194,414	+		Sama_0987	0.16	-1.2
1,194,414	+		Sama_0987	0.16	+0.1
1,194,414	+		Sama_0987	0.16	+3.9
1,194,415	-		Sama_0987	0.16	-0.1
1,194,423	-		Sama_0987	0.16	+1.1
1,194,423	-		Sama_0987	0.16	-0.4
1,194,423	-		Sama_0987	0.16	+0.9
1,194,567	-		Sama_0987	0.22	-1.4
1,194,570	+		Sama_0987	0.22	+1.0
1,194,570	+		Sama_0987	0.22	-0.8
1,194,570	+		Sama_0987	0.22	+0.6
1,194,618	+		Sama_0987	0.24	+1.9
1,194,695	+		Sama_0987	0.27	+0.4
1,194,695	+		Sama_0987	0.27	+1.1
1,194,696	-		Sama_0987	0.27	+1.4
1,194,696	-		Sama_0987	0.27	+0.1
1,194,696	-		Sama_0987	0.27	-0.0
1,194,696	-		Sama_0987	0.27	-1.6
1,194,696	-		Sama_0987	0.27	+2.3
1,194,696	-		Sama_0987	0.27	+1.3
1,194,696	-		Sama_0987	0.27	-0.6
1,194,696	-		Sama_0987	0.27	+0.7
1,194,696	-		Sama_0987	0.27	+0.6
1,194,696	-		Sama_0987	0.27	-1.4
1,194,696	-		Sama_0987	0.27	-2.0
1,194,734	+		Sama_0987	0.29	+2.2
1,194,734	+		Sama_0987	0.29	-2.2
1,194,734	+		Sama_0987	0.29	-0.2
1,194,767	+		Sama_0987	0.30	-1.2
1,194,767	+		Sama_0987	0.30	-1.2
1,194,768	-		Sama_0987	0.30	-0.4
1,194,768	-		Sama_0987	0.30	+1.6
1,194,768	-		Sama_0987	0.30	+0.3
1,194,768	-		Sama_0987	0.30	-0.7
1,194,809	+		Sama_0987	0.32	+0.5
1,194,809	+		Sama_0987	0.32	+0.6
1,194,809	+		Sama_0987	0.32	-1.2
1,194,809	+		Sama_0987	0.32	+1.6
1,194,809	+		Sama_0987	0.32	-0.5
1,194,809	+		Sama_0987	0.32	+1.6
1,194,810	-		Sama_0987	0.32	-1.7
1,194,810	-		Sama_0987	0.32	+1.2
1,194,810	-		Sama_0987	0.32	+1.7
1,194,923	+		Sama_0987	0.36	-0.7
1,194,924	-		Sama_0987	0.36	+1.1
1,194,932	+		Sama_0987	0.37	-0.9
1,194,932	+		Sama_0987	0.37	+1.3
1,194,933	-		Sama_0987	0.37	+0.6
1,194,933	-		Sama_0987	0.37	+0.2
1,194,933	-		Sama_0987	0.37	-0.2
1,194,979	+		Sama_0987	0.39	-0.3
1,194,979	+		Sama_0987	0.39	-0.4
1,194,979	+		Sama_0987	0.39	+1.3
1,194,979	+		Sama_0987	0.39	-1.4
1,194,979	+		Sama_0987	0.39	-0.1
1,194,980	-		Sama_0987	0.39	-0.7
1,194,980	-		Sama_0987	0.39	-0.5
1,194,980	-		Sama_0987	0.39	-0.0
1,195,018	+		Sama_0987	0.40	-1.6
1,195,018	+		Sama_0987	0.40	-1.8
1,195,018	+		Sama_0987	0.40	+2.7
1,195,018	+		Sama_0987	0.40	-2.2
1,195,018	+		Sama_0987	0.40	-1.6
1,195,018	+		Sama_0987	0.40	+1.1
1,195,018	+		Sama_0987	0.40	-0.4
1,195,018	+		Sama_0987	0.40	-0.0
1,195,019	-		Sama_0987	0.40	+1.2
1,195,019	-		Sama_0987	0.40	+0.4
1,195,019	-		Sama_0987	0.40	-1.0
1,195,019	-		Sama_0987	0.40	-1.6
1,195,019	-		Sama_0987	0.40	-1.2
1,195,019	-		Sama_0987	0.40	-0.9
1,195,128	-		Sama_0987	0.45	+1.1
1,195,322	+		Sama_0987	0.52	+2.7
1,195,323	-		Sama_0987	0.52	-2.4
1,195,334	+		Sama_0987	0.53	-0.5
1,195,334	+		Sama_0987	0.53	-1.7
1,195,334	+		Sama_0987	0.53	+0.9
1,195,369	+		Sama_0987	0.54	+0.3
1,195,369	+		Sama_0987	0.54	-0.2
1,195,369	+		Sama_0987	0.54	-1.3
1,195,369	+		Sama_0987	0.54	+1.7
1,195,370	-		Sama_0987	0.54	+1.8
1,195,370	-		Sama_0987	0.54	-2.7
1,195,370	-		Sama_0987	0.54	-1.6
1,195,370	-		Sama_0987	0.54	+0.5
1,195,370	-		Sama_0987	0.54	-1.0
1,195,370	-		Sama_0987	0.54	+0.2
1,195,370	-		Sama_0987	0.54	-0.7
1,195,370	-		Sama_0987	0.54	-0.7
1,195,370	-		Sama_0987	0.54	-1.2
1,195,370	-		Sama_0987	0.54	-1.5
1,195,401	-		Sama_0987	0.56	+0.5
1,195,431	+		Sama_0987	0.57	+0.2
1,195,431	+		Sama_0987	0.57	-0.0
1,195,431	+		Sama_0987	0.57	+0.7
1,195,431	+		Sama_0987	0.57	-1.2
1,195,431	+		Sama_0987	0.57	-0.5
1,195,568	+		Sama_0987	0.62	+0.1
1,195,568	+		Sama_0987	0.62	-1.0
1,195,569	-		Sama_0987	0.62	+0.3
1,195,569	-		Sama_0987	0.62	+0.9
1,195,598	+		Sama_0987	0.63	+0.4
1,195,598	+		Sama_0987	0.63	-1.2
1,195,598	+		Sama_0987	0.63	+0.9
1,195,598	+		Sama_0987	0.63	-1.5
1,195,598	+		Sama_0987	0.63	-2.9
1,195,599	-		Sama_0987	0.63	-1.2
1,195,599	-		Sama_0987	0.63	+0.4
1,195,622	+		Sama_0987	0.64	+1.3
1,195,622	+		Sama_0987	0.64	+3.1
1,195,622	+		Sama_0987	0.64	-0.9
1,195,623	-		Sama_0987	0.64	+1.4
1,195,637	+		Sama_0987	0.65	+1.4
1,195,691	+		Sama_0987	0.67	-1.7
1,195,691	+		Sama_0987	0.67	-0.4
1,195,691	+		Sama_0987	0.67	-0.3
1,195,691	+		Sama_0987	0.67	+0.5
1,195,692	-		Sama_0987	0.67	-2.1
1,195,694	-		Sama_0987	0.67	-1.6
1,195,712	+		Sama_0987	0.68	-0.7
1,195,712	+		Sama_0987	0.68	-0.4
1,195,713	-		Sama_0987	0.68	-0.3
1,195,713	-		Sama_0987	0.68	+0.9
1,195,796	+		Sama_0987	0.71	-0.1
1,195,802	+		Sama_0987	0.72	-3.1
1,195,803	-		Sama_0987	0.72	+2.4
1,195,857	+		Sama_0987	0.74	-0.2
1,195,858	-		Sama_0987	0.74	-0.7
1,195,919	+		Sama_0987	0.76	-1.0
1,195,919	+		Sama_0987	0.76	+0.1
1,195,919	+		Sama_0987	0.76	-0.3
1,195,920	-		Sama_0987	0.76	-1.2
1,195,920	-		Sama_0987	0.76	-1.4
1,195,943	+		Sama_0987	0.77	+2.0
1,195,943	+		Sama_0987	0.77	-1.4
1,195,943	+		Sama_0987	0.77	-1.0
1,195,944	-		Sama_0987	0.77	+0.1
1,195,944	-		Sama_0987	0.77	+0.3
1,195,977	-		Sama_0987	0.79	-2.3
1,196,028	+		Sama_0987	0.81	-0.4
1,196,028	+		Sama_0987	0.81	-0.9
1,196,028	+		Sama_0987	0.81	+0.1
1,196,028	+		Sama_0987	0.81	+0.2
1,196,028	+		Sama_0987	0.81	-2.1
1,196,029	-		Sama_0987	0.81	+0.7
1,196,029	-		Sama_0987	0.81	-2.1
1,196,047	+		Sama_0987	0.81	-0.7
1,196,047	+		Sama_0987	0.81	+2.3
1,196,047	+		Sama_0987	0.81	-0.2
1,196,047	+		Sama_0987	0.81	-1.9
1,196,047	+		Sama_0987	0.81	+0.6
1,196,102	+		Sama_0987	0.84	+0.3
1,196,102	+		Sama_0987	0.84	+1.1
1,196,103	-		Sama_0987	0.84	-0.4
1,196,103	-		Sama_0987	0.84	-0.2
1,196,103	-		Sama_0987	0.84	-0.9
1,196,103	-		Sama_0987	0.84	+0.8
1,196,103	-		Sama_0987	0.84	+0.3
1,196,113	+		Sama_0987	0.84	-1.8
1,196,113	+		Sama_0987	0.84	+1.3
1,196,113	+		Sama_0987	0.84	+2.0
1,196,114	-		Sama_0987	0.84	-0.9
1,196,220	-		Sama_0987	0.88	+0.3
1,196,220	-		Sama_0987	0.88	-1.3
1,196,264	+				-1.2
1,196,264	+				-0.4
1,196,303	+				-1.4
1,196,303	+				-0.8
1,196,304	-				-1.4
1,196,304	-				-0.4
1,196,304	-				+0.9
1,196,304	-				-0.4
1,196,304	-				-1.0
1,196,304	-				-0.4
1,196,388	+				+0.4
1,196,456	-				-0.6
1,196,525	-				-1.6
1,196,540	+				-0.2
1,196,566	+				-0.3
1,196,567	-				-0.0
1,196,574	+				-0.4
1,196,574	+				+1.0
1,196,574	+				-0.4
1,196,575	-				+1.3
1,196,682	+		Sama_0988	0.14	+1.1
1,196,682	+		Sama_0988	0.14	-0.6
1,196,683	-		Sama_0988	0.14	-0.5
1,196,683	-		Sama_0988	0.14	-0.9
1,196,701	+		Sama_0988	0.15	+1.7
1,196,701	+		Sama_0988	0.15	+1.8
1,196,701	+		Sama_0988	0.15	+1.3
1,196,702	-		Sama_0988	0.15	-2.6
1,196,702	-		Sama_0988	0.15	+1.9
1,196,733	+		Sama_0988	0.18	+0.6
1,196,733	+		Sama_0988	0.18	-1.4
1,196,734	-		Sama_0988	0.18	-1.0
1,196,734	-		Sama_0988	0.18	-1.1
1,196,734	-		Sama_0988	0.18	+1.3
1,196,734	-		Sama_0988	0.18	-0.7
1,196,749	+		Sama_0988	0.19	-0.3
1,196,882	+		Sama_0988	0.31	-2.2
1,196,883	-		Sama_0988	0.31	-0.8
1,196,902	+		Sama_0988	0.32	-2.1
1,196,902	+		Sama_0988	0.32	+1.0
1,196,902	+		Sama_0988	0.32	-0.0
1,196,903	-		Sama_0988	0.32	-0.6
1,196,979	+		Sama_0988	0.39	+0.7
1,197,040	+		Sama_0988	0.44	+0.8
1,197,040	+		Sama_0988	0.44	-1.6
1,197,040	+		Sama_0988	0.44	+0.4
1,197,041	-		Sama_0988	0.44	+0.9
1,197,041	-		Sama_0988	0.44	+0.6
1,197,041	-		Sama_0988	0.44	+1.4
1,197,041	-		Sama_0988	0.44	-1.2
1,197,067	+		Sama_0988	0.46	+1.2
1,197,067	+		Sama_0988	0.46	-1.6
1,197,068	-		Sama_0988	0.46	+1.3
1,197,078	+		Sama_0988	0.47	+0.5
1,197,079	-		Sama_0988	0.47	-0.9
1,197,079	-		Sama_0988	0.47	-1.6
1,197,102	+		Sama_0988	0.49	+1.4
1,197,103	-		Sama_0988	0.49	+0.4
1,197,387	+		Sama_0988	0.73	-1.0
1,197,387	+		Sama_0988	0.73	+0.3
1,197,387	+		Sama_0988	0.73	+0.5
1,197,387	+		Sama_0988	0.73	+3.5
1,197,388	-		Sama_0988	0.74	-1.7
1,197,388	-		Sama_0988	0.74	-3.2
1,197,388	-		Sama_0988	0.74	-0.2
1,197,388	-		Sama_0988	0.74	+0.6