Strain Fitness in Shewanella amazonensis SB2B around Sama_0978

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
1,181,055	+				-2.4
1,181,055	+				+1.4
1,181,102	+				-2.1
1,181,103	-				-1.1
1,181,103	-				-1.0
1,181,138	+				-2.0
1,181,140	+				+0.4
1,181,141	-				+0.5
1,181,144	+				+1.6
1,181,145	-				+2.7
1,181,145	-				-1.2
1,181,200	-				+0.7
1,181,391	+		Sama_0977	0.28	-0.4
1,181,392	-		Sama_0977	0.28	+0.9
1,181,400	+		Sama_0977	0.29	-0.8
1,181,401	-		Sama_0977	0.29	-2.6
1,181,445	+		Sama_0977	0.34	-2.2
1,181,445	+		Sama_0977	0.34	-0.5
1,181,446	-		Sama_0977	0.34	+0.0
1,181,463	+		Sama_0977	0.36	-2.8
1,181,466	+		Sama_0977	0.37	-2.7
1,181,467	-		Sama_0977	0.37	-2.0
1,181,467	-		Sama_0977	0.37	+0.0
1,181,467	-		Sama_0977	0.37	+0.5
1,181,467	-		Sama_0977	0.37	-0.2
1,181,519	-		Sama_0977	0.43	-0.7
1,181,519	-		Sama_0977	0.43	-2.4
1,181,529	-		Sama_0977	0.44	-0.4
1,181,563	+		Sama_0977	0.48	-1.1
1,181,563	+		Sama_0977	0.48	-0.7
1,181,563	+		Sama_0977	0.48	-1.2
1,181,564	-		Sama_0977	0.48	-0.6
1,181,564	-		Sama_0977	0.48	-0.2
1,181,564	-		Sama_0977	0.48	-0.2
1,181,564	-		Sama_0977	0.48	+1.0
1,181,564	-		Sama_0977	0.48	+0.4
1,181,564	-		Sama_0977	0.48	-1.7
1,181,567	-		Sama_0977	0.49	+0.6
1,181,672	+		Sama_0977	0.62	-2.0
1,181,672	+		Sama_0977	0.62	-2.7
1,181,673	-		Sama_0977	0.62	+0.6
1,181,746	+		Sama_0977	0.71	-1.2
1,181,771	+		Sama_0977	0.74	+0.2
1,181,839	+		Sama_0977	0.82	-1.0
1,181,839	+		Sama_0977	0.82	+1.9
1,181,840	-		Sama_0977	0.82	-0.7
1,181,843	-		Sama_0977	0.82	-0.7
1,181,843	-		Sama_0977	0.82	+0.0
1,181,941	-				-1.8
1,181,946	-				-0.2
1,181,946	-				+0.2
1,181,946	-				-1.7
1,181,946	-				-0.4
1,181,962	+				-0.5
1,181,983	-				-1.7
1,181,988	+				-1.7
1,182,002	+				-0.3
1,182,003	-				-1.0
1,182,003	-				+1.3
1,182,049	+				-0.4
1,182,049	+				-1.4
1,182,049	+				-0.0
1,182,049	+				-1.3
1,182,049	+				-1.3
1,182,050	-				-0.0
1,182,050	-				+1.2
1,182,050	-				-2.1
1,182,050	-				-2.9
1,182,050	-				-0.6
1,182,109	+				+0.2
1,182,109	+				-1.9
1,182,109	+				-0.2
1,182,110	-				-1.9
1,182,204	+		Sama_0978	0.18	+0.2
1,182,204	+		Sama_0978	0.18	-1.1
1,182,205	-		Sama_0978	0.18	-1.2
1,182,363	-		Sama_0978	0.35	-1.0
1,182,363	-		Sama_0978	0.35	-2.2
1,182,384	+		Sama_0978	0.37	-1.0
1,182,405	+		Sama_0978	0.39	-1.7
1,182,405	+		Sama_0978	0.39	+0.4
1,182,406	-		Sama_0978	0.39	-1.0
1,182,540	+		Sama_0978	0.54	-1.4
1,182,543	+		Sama_0978	0.54	-1.4
1,182,543	+		Sama_0978	0.54	+0.6
1,182,543	+		Sama_0978	0.54	+1.0
1,182,605	+		Sama_0978	0.60	-1.6
1,182,606	-		Sama_0978	0.60	+2.5
1,182,726	+		Sama_0978	0.73	-1.0
1,182,726	+		Sama_0978	0.73	+1.3
1,182,726	+		Sama_0978	0.73	+0.3
1,182,727	-		Sama_0978	0.73	-0.5
1,182,727	-		Sama_0978	0.73	+1.0
1,182,805	+		Sama_0978	0.81	+1.2
1,182,805	+		Sama_0978	0.81	-1.0
1,182,806	-		Sama_0978	0.81	-1.0
1,182,810	+		Sama_0978	0.82	+0.6
1,182,813	+		Sama_0978	0.82	+0.2
1,182,814	-		Sama_0978	0.82	+0.2
1,182,814	-		Sama_0978	0.82	+0.5
1,182,855	+		Sama_0978	0.87	-0.9
1,182,856	-		Sama_0978	0.87	-2.5
1,182,857	+		Sama_0978	0.87	-2.3
1,182,857	+		Sama_0978	0.87	-0.5
1,182,857	+		Sama_0978	0.87	-0.7
1,182,857	+		Sama_0978	0.87	-1.0
1,182,857	+		Sama_0978	0.87	+0.1
1,182,857	+		Sama_0978	0.87	-1.2
1,182,857	+		Sama_0978	0.87	-0.3
1,182,857	+		Sama_0978	0.87	-1.1
1,182,857	+		Sama_0978	0.87	+0.4
1,182,858	-		Sama_0978	0.87	-0.4
1,182,858	-		Sama_0978	0.87	+0.4
1,182,858	-		Sama_0978	0.87	+1.2
1,182,858	-		Sama_0978	0.87	-0.7
1,182,858	-		Sama_0978	0.87	+1.8
1,182,858	-		Sama_0978	0.87	+3.6
1,182,886	-		Sama_0978	0.90	-2.4
1,182,933	+				+1.0
1,182,999	-				+0.3
1,183,046	+				+0.8
1,183,047	-				-1.9
1,183,047	-				-0.9
1,183,146	+				-2.4
1,183,147	-				-0.2
1,183,147	-				+1.6
1,183,180	+		Sama_0979	0.11	-0.3
1,183,180	+		Sama_0979	0.11	+2.1
1,183,259	+		Sama_0979	0.19	-0.7
1,183,265	+		Sama_0979	0.20	-1.4
1,183,316	+		Sama_0979	0.25	+1.6
1,183,317	-		Sama_0979	0.25	-0.4
1,183,317	-		Sama_0979	0.25	+0.4
1,183,317	-		Sama_0979	0.25	-0.0
1,183,317	-		Sama_0979	0.25	+1.7
1,183,317	-		Sama_0979	0.25	+0.5
1,183,317	-		Sama_0979	0.25	+0.6
1,183,317	-		Sama_0979	0.25	-1.2
1,183,348	+		Sama_0979	0.28	+1.2
1,183,407	+		Sama_0979	0.34	+0.4
1,183,407	+		Sama_0979	0.34	+0.0
1,183,417	-		Sama_0979	0.35	-1.9
1,183,417	-		Sama_0979	0.35	-2.1
1,183,458	+		Sama_0979	0.39	+0.1
1,183,458	+		Sama_0979	0.39	-0.0
1,183,458	+		Sama_0979	0.39	+1.0
1,183,515	-		Sama_0979	0.45	-1.6
1,183,545	+		Sama_0979	0.48	+2.0
1,183,572	+		Sama_0979	0.51	+0.4
1,183,572	+		Sama_0979	0.51	-1.0
1,183,572	+		Sama_0979	0.51	-1.2
1,183,573	-		Sama_0979	0.51	+0.6
1,183,656	-		Sama_0979	0.60	-0.0
1,183,660	-		Sama_0979	0.60	-0.6
1,183,699	+		Sama_0979	0.64	+0.9
1,183,700	-		Sama_0979	0.64	-0.4
1,183,700	-		Sama_0979	0.64	-2.7
1,183,720	+		Sama_0979	0.66	+0.4
1,183,721	-		Sama_0979	0.66	-1.4
1,183,746	+		Sama_0979	0.69	+0.7
1,183,746	+		Sama_0979	0.69	-1.2
1,183,769	+		Sama_0979	0.71	-0.9
1,183,770	-		Sama_0979	0.71	-2.0
1,183,795	+		Sama_0979	0.74	-0.7
1,183,795	+		Sama_0979	0.74	+2.6
1,183,796	-		Sama_0979	0.74	+1.2
1,183,813	+		Sama_0979	0.76	+0.3
1,183,831	+		Sama_0979	0.78	+0.8
1,183,832	-		Sama_0979	0.78	+1.5
1,183,900	+		Sama_0979	0.85	+0.6
1,183,937	+		Sama_0979	0.88	-1.2
1,183,937	+		Sama_0979	0.88	-1.6