Strain Fitness in Shewanella amazonensis SB2B around Sama_0774

Experiment: Motility assay, center cut sample 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0772 and Sama_0773 are separated by 1 nucleotidesSama_0773 and Sama_0774 are separated by 47 nucleotidesSama_0774 and panC are separated by 191 nucleotides Sama_0772: Sama_0772 - ABC transporter, ATP-binding protein (RefSeq), at 955,486 to 956,445 _0772 Sama_0773: Sama_0773 - ABC-type polysaccharide/polyol phosphate export systems permease component (RefSeq), at 956,447 to 957,217 _0773 Sama_0774: Sama_0774 - hypothetical protein (RefSeq), at 957,265 to 957,765 _0774 Sama_0775: panC - pantoate--beta-alanine ligase (RefSeq), at 957,957 to 958,802 panC Position (kb) 957 958Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 956.343 kb on - strand, within Sama_0772at 956.343 kb on - strand, within Sama_0772at 956.364 kb on + strandat 956.365 kb on - strandat 956.459 kb on + strandat 956.460 kb on - strandat 956.460 kb on - strandat 956.460 kb on - strandat 956.513 kb on - strandat 956.558 kb on + strand, within Sama_0773at 956.559 kb on - strand, within Sama_0773at 956.559 kb on - strand, within Sama_0773at 956.614 kb on + strand, within Sama_0773at 956.614 kb on + strand, within Sama_0773at 956.615 kb on - strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.619 kb on - strand, within Sama_0773at 956.619 kb on - strand, within Sama_0773at 956.619 kb on - strand, within Sama_0773at 956.629 kb on + strand, within Sama_0773at 956.630 kb on - strand, within Sama_0773at 956.672 kb on + strand, within Sama_0773at 956.731 kb on + strand, within Sama_0773at 956.732 kb on - strand, within Sama_0773at 956.732 kb on - strand, within Sama_0773at 956.753 kb on + strand, within Sama_0773at 956.753 kb on + strand, within Sama_0773at 956.753 kb on + strand, within Sama_0773at 956.754 kb on - strand, within Sama_0773at 956.772 kb on - strand, within Sama_0773at 956.815 kb on - strand, within Sama_0773at 956.920 kb on + strand, within Sama_0773at 956.963 kb on - strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.994 kb on - strand, within Sama_0773at 956.994 kb on - strand, within Sama_0773at 957.007 kb on - strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.057 kb on + strand, within Sama_0773at 957.057 kb on + strand, within Sama_0773at 957.071 kb on + strand, within Sama_0773at 957.072 kb on - strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.179 kb on + strandat 957.179 kb on + strandat 957.179 kb on + strandat 957.179 kb on + strandat 957.182 kb on + strandat 957.230 kb on + strandat 957.249 kb on + strandat 957.249 kb on + strandat 957.266 kb on + strandat 957.267 kb on - strandat 957.379 kb on + strand, within Sama_0774at 957.379 kb on + strand, within Sama_0774at 957.383 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.463 kb on + strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.464 kb on - strand, within Sama_0774at 957.467 kb on + strand, within Sama_0774at 957.467 kb on + strand, within Sama_0774at 957.467 kb on + strand, within Sama_0774at 957.468 kb on - strand, within Sama_0774at 957.468 kb on - strand, within Sama_0774at 957.668 kb on + strand, within Sama_0774at 957.668 kb on + strand, within Sama_0774at 957.669 kb on - strand, within Sama_0774at 957.669 kb on - strand, within Sama_0774at 957.696 kb on + strand, within Sama_0774at 957.696 kb on + strand, within Sama_0774at 957.697 kb on - strand, within Sama_0774at 957.698 kb on + strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.699 kb on - strand, within Sama_0774at 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.739 kb on + strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.740 kb on - strandat 957.801 kb on - strandat 957.878 kb on + strandat 957.878 kb on + strandat 957.879 kb on - strandat 957.882 kb on + strandat 957.882 kb on + strandat 957.882 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.942 kb on + strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.943 kb on - strandat 957.959 kb on - strandat 957.959 kb on - strandat 957.977 kb on + strandat 957.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2
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956,343 - Sama_0772 0.89 -2.5
956,343 - Sama_0772 0.89 -0.6
956,364 + +0.1
956,365 - +0.0
956,459 + +1.7
956,460 - +1.0
956,460 - -2.7
956,460 - +1.3
956,513 - -0.3
956,558 + Sama_0773 0.14 -1.7
956,559 - Sama_0773 0.15 -0.3
956,559 - Sama_0773 0.15 +1.1
956,614 + Sama_0773 0.22 -1.3
956,614 + Sama_0773 0.22 -1.9
956,615 - Sama_0773 0.22 +0.9
956,618 + Sama_0773 0.22 -2.3
956,618 + Sama_0773 0.22 +1.0
956,618 + Sama_0773 0.22 -1.5
956,618 + Sama_0773 0.22 +2.7
956,618 + Sama_0773 0.22 -0.7
956,618 + Sama_0773 0.22 +0.3
956,618 + Sama_0773 0.22 +0.7
956,619 - Sama_0773 0.22 +1.5
956,619 - Sama_0773 0.22 -1.7
956,619 - Sama_0773 0.22 -1.2
956,629 + Sama_0773 0.24 +0.8
956,630 - Sama_0773 0.24 -0.9
956,672 + Sama_0773 0.29 +0.5
956,731 + Sama_0773 0.37 -0.9
956,732 - Sama_0773 0.37 +3.4
956,732 - Sama_0773 0.37 -0.7
956,753 + Sama_0773 0.40 -0.3
956,753 + Sama_0773 0.40 -1.3
956,753 + Sama_0773 0.40 -1.1
956,754 - Sama_0773 0.40 -1.9
956,772 - Sama_0773 0.42 -2.0
956,815 - Sama_0773 0.48 -1.3
956,920 + Sama_0773 0.61 -0.7
956,963 - Sama_0773 0.67 +0.9
956,993 + Sama_0773 0.71 -1.9
956,993 + Sama_0773 0.71 -0.4
956,993 + Sama_0773 0.71 +1.2
956,994 - Sama_0773 0.71 +0.7
956,994 - Sama_0773 0.71 -2.7
957,007 - Sama_0773 0.73 +1.1
957,011 + Sama_0773 0.73 +0.3
957,011 + Sama_0773 0.73 +0.4
957,011 + Sama_0773 0.73 -2.0
957,011 + Sama_0773 0.73 +0.6
957,011 + Sama_0773 0.73 -0.4
957,057 + Sama_0773 0.79 -1.1
957,057 + Sama_0773 0.79 -2.0
957,071 + Sama_0773 0.81 -2.1
957,072 - Sama_0773 0.81 +1.0
957,078 + Sama_0773 0.82 -0.7
957,078 + Sama_0773 0.82 +0.7
957,078 + Sama_0773 0.82 -1.7
957,078 + Sama_0773 0.82 -0.4
957,079 - Sama_0773 0.82 -3.0
957,079 - Sama_0773 0.82 -1.6
957,079 - Sama_0773 0.82 -0.0
957,179 + +0.7
957,179 + +0.7
957,179 + -1.2
957,179 + -2.2
957,182 + -0.3
957,230 + +1.2
957,249 + -1.7
957,249 + +2.1
957,266 + -0.8
957,267 - -2.1
957,379 + Sama_0774 0.23 +2.4
957,379 + Sama_0774 0.23 +0.0
957,383 + Sama_0774 0.24 +0.2
957,463 + Sama_0774 0.40 +1.7
957,463 + Sama_0774 0.40 -0.8
957,463 + Sama_0774 0.40 -2.1
957,463 + Sama_0774 0.40 -1.5
957,463 + Sama_0774 0.40 -1.1
957,463 + Sama_0774 0.40 -0.3
957,463 + Sama_0774 0.40 -1.3
957,463 + Sama_0774 0.40 -0.1
957,463 + Sama_0774 0.40 -0.3
957,463 + Sama_0774 0.40 -2.2
957,463 + Sama_0774 0.40 -1.9
957,464 - Sama_0774 0.40 -0.8
957,464 - Sama_0774 0.40 -0.8
957,464 - Sama_0774 0.40 -0.3
957,464 - Sama_0774 0.40 -2.0
957,464 - Sama_0774 0.40 -1.1
957,464 - Sama_0774 0.40 -1.7
957,464 - Sama_0774 0.40 -0.4
957,464 - Sama_0774 0.40 -0.1
957,464 - Sama_0774 0.40 -0.8
957,464 - Sama_0774 0.40 +0.2
957,464 - Sama_0774 0.40 -0.1
957,464 - Sama_0774 0.40 -0.3
957,467 + Sama_0774 0.40 +0.3
957,467 + Sama_0774 0.40 +1.4
957,467 + Sama_0774 0.40 -1.0
957,468 - Sama_0774 0.41 -2.2
957,468 - Sama_0774 0.41 -1.1
957,668 + Sama_0774 0.80 +0.1
957,668 + Sama_0774 0.80 -0.2
957,669 - Sama_0774 0.81 -1.1
957,669 - Sama_0774 0.81 -0.6
957,696 + Sama_0774 0.86 -0.7
957,696 + Sama_0774 0.86 -1.0
957,697 - Sama_0774 0.86 -2.0
957,698 + Sama_0774 0.86 -0.1
957,699 - Sama_0774 0.87 -0.5
957,699 - Sama_0774 0.87 +0.7
957,699 - Sama_0774 0.87 -2.8
957,699 - Sama_0774 0.87 -0.1
957,739 + +0.2
957,739 + +1.3
957,739 + -0.6
957,739 + +0.8
957,739 + +2.1
957,739 + -2.6
957,739 + +0.0
957,740 - -1.0
957,740 - -0.3
957,740 - +2.1
957,740 - -0.6
957,740 - -0.8
957,801 - -2.1
957,878 + +1.1
957,878 + -0.2
957,879 - +1.4
957,882 + +1.1
957,882 + +1.5
957,882 + +1.2
957,942 + -0.6
957,942 + -0.2
957,942 + -0.1
957,942 + -1.1
957,942 + -0.5
957,942 + -1.3
957,942 + -0.1
957,942 + -0.2
957,942 + -0.8
957,942 + +0.9
957,943 - -2.1
957,943 - +1.9
957,943 - -2.0
957,943 - -1.2
957,943 - +0.1
957,943 - -0.6
957,943 - +0.3
957,943 - -1.2
957,943 - +0.7
957,943 - -0.5
957,959 - +0.0
957,959 - +0.8
957,977 + -1.1
957,978 - +1.0

Or see this region's nucleotide sequence