Strain Fitness in Shewanella amazonensis SB2B around Sama_0722

Experiment: Motility assay, center cut sample 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0721 and Sama_0722 are separated by 167 nucleotidesSama_0722 and Sama_0723 are separated by 202 nucleotides Sama_0721: Sama_0721 - integral membrane protein CcmA involved in cell shape determination-like protein (RefSeq), at 885,318 to 886,166 _0721 Sama_0722: Sama_0722 - hypothetical protein (RefSeq), at 886,334 to 887,218 _0722 Sama_0723: Sama_0723 - hypothetical protein (RefSeq), at 887,421 to 888,908 _0723 Position (kb) 886 887 888Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 885.344 kb on + strandat 885.344 kb on + strandat 885.345 kb on - strandat 885.345 kb on - strandat 885.345 kb on - strandat 885.442 kb on + strand, within Sama_0721at 885.442 kb on + strand, within Sama_0721at 885.442 kb on + strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.448 kb on + strand, within Sama_0721at 885.464 kb on + strand, within Sama_0721at 885.518 kb on + strand, within Sama_0721at 885.581 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.779 kb on + strand, within Sama_0721at 885.789 kb on + strand, within Sama_0721at 885.939 kb on + strand, within Sama_0721at 885.939 kb on + strand, within Sama_0721at 885.940 kb on - strand, within Sama_0721at 886.116 kb on - strandat 886.116 kb on - strandat 886.116 kb on - strandat 886.118 kb on + strandat 886.119 kb on - strandat 886.164 kb on + strandat 886.165 kb on - strandat 886.335 kb on + strandat 886.336 kb on - strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.382 kb on - strandat 886.382 kb on - strandat 886.640 kb on - strand, within Sama_0722at 886.640 kb on - strand, within Sama_0722at 886.775 kb on + strand, within Sama_0722at 886.776 kb on - strand, within Sama_0722at 886.830 kb on - strand, within Sama_0722at 886.858 kb on + strand, within Sama_0722at 886.859 kb on - strand, within Sama_0722at 886.887 kb on + strand, within Sama_0722at 886.888 kb on - strand, within Sama_0722at 886.910 kb on + strand, within Sama_0722at 886.910 kb on + strand, within Sama_0722at 886.911 kb on - strand, within Sama_0722at 886.918 kb on - strand, within Sama_0722at 886.943 kb on + strand, within Sama_0722at 886.944 kb on - strand, within Sama_0722at 886.978 kb on + strand, within Sama_0722at 886.978 kb on + strand, within Sama_0722at 886.978 kb on + strand, within Sama_0722at 886.979 kb on - strand, within Sama_0722at 886.979 kb on - strand, within Sama_0722at 886.991 kb on + strand, within Sama_0722at 886.991 kb on + strand, within Sama_0722at 886.991 kb on + strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.064 kb on - strand, within Sama_0722at 887.074 kb on + strand, within Sama_0722at 887.106 kb on - strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.174 kb on + strandat 887.174 kb on + strandat 887.175 kb on - strandat 887.175 kb on - strandat 887.175 kb on - strandat 887.175 kb on - strandat 887.175 kb on - strandat 887.221 kb on + strandat 887.221 kb on + strandat 887.222 kb on - strandat 887.222 kb on - strandat 887.244 kb on - strandat 887.246 kb on + strandat 887.247 kb on - strandat 887.247 kb on - strandat 887.293 kb on - strandat 887.344 kb on + strandat 887.344 kb on + strandat 887.344 kb on + strandat 887.344 kb on + strandat 887.345 kb on - strandat 887.392 kb on + strandat 887.410 kb on + strandat 887.411 kb on - strandat 887.411 kb on - strandat 887.433 kb on - strandat 887.487 kb on + strandat 887.487 kb on + strandat 887.487 kb on + strandat 887.487 kb on + strandat 887.488 kb on - strandat 887.488 kb on - strandat 887.488 kb on - strandat 887.488 kb on - strandat 887.488 kb on - strandat 887.507 kb on + strandat 887.507 kb on + strandat 887.529 kb on + strandat 887.530 kb on - strandat 887.533 kb on + strandat 887.569 kb on - strandat 887.587 kb on + strand, within Sama_0723at 887.587 kb on + strand, within Sama_0723at 887.587 kb on + strand, within Sama_0723at 887.587 kb on + strand, within Sama_0723at 887.588 kb on - strand, within Sama_0723at 887.588 kb on - strand, within Sama_0723at 887.588 kb on - strand, within Sama_0723at 887.683 kb on + strand, within Sama_0723at 887.684 kb on - strand, within Sama_0723at 887.684 kb on - strand, within Sama_0723at 887.684 kb on - strand, within Sama_0723at 887.684 kb on - strand, within Sama_0723at 887.698 kb on + strand, within Sama_0723at 887.698 kb on + strand, within Sama_0723at 887.698 kb on + strand, within Sama_0723at 887.698 kb on + strand, within Sama_0723at 887.698 kb on + strand, within Sama_0723at 887.698 kb on + strand, within Sama_0723at 887.698 kb on + strand, within Sama_0723at 887.699 kb on - strand, within Sama_0723at 887.699 kb on - strand, within Sama_0723at 887.699 kb on - strand, within Sama_0723at 887.699 kb on - strand, within Sama_0723at 887.699 kb on - strand, within Sama_0723at 887.699 kb on - strand, within Sama_0723at 887.715 kb on + strand, within Sama_0723at 887.715 kb on + strand, within Sama_0723at 887.716 kb on - strand, within Sama_0723at 887.716 kb on - strand, within Sama_0723at 887.749 kb on - strand, within Sama_0723at 887.749 kb on - strand, within Sama_0723at 887.749 kb on - strand, within Sama_0723at 887.766 kb on + strand, within Sama_0723at 887.766 kb on + strand, within Sama_0723at 887.767 kb on - strand, within Sama_0723at 887.767 kb on - strand, within Sama_0723at 887.790 kb on - strand, within Sama_0723at 887.857 kb on + strand, within Sama_0723at 887.857 kb on + strand, within Sama_0723at 887.858 kb on - strand, within Sama_0723at 887.866 kb on + strand, within Sama_0723at 887.866 kb on + strand, within Sama_0723at 887.866 kb on + strand, within Sama_0723at 887.866 kb on + strand, within Sama_0723at 887.867 kb on - strand, within Sama_0723at 887.867 kb on - strand, within Sama_0723at 887.897 kb on - strand, within Sama_0723at 887.980 kb on + strand, within Sama_0723at 888.028 kb on + strand, within Sama_0723at 888.028 kb on + strand, within Sama_0723at 888.028 kb on + strand, within Sama_0723at 888.028 kb on + strand, within Sama_0723at 888.029 kb on - strand, within Sama_0723at 888.029 kb on - strand, within Sama_0723at 888.029 kb on - strand, within Sama_0723at 888.083 kb on - strand, within Sama_0723at 888.146 kb on + strand, within Sama_0723at 888.146 kb on + strand, within Sama_0723at 888.180 kb on + strand, within Sama_0723at 888.181 kb on - strand, within Sama_0723at 888.181 kb on - strand, within Sama_0723at 888.181 kb on - strand, within Sama_0723at 888.181 kb on - strand, within Sama_0723at 888.181 kb on - strand, within Sama_0723at 888.181 kb on - strand, within Sama_0723at 888.181 kb on - strand, within Sama_0723at 888.183 kb on + strand, within Sama_0723at 888.183 kb on + strand, within Sama_0723at 888.183 kb on + strand, within Sama_0723at 888.184 kb on - strand, within Sama_0723at 888.184 kb on - strand, within Sama_0723at 888.184 kb on - strand, within Sama_0723at 888.184 kb on - strand, within Sama_0723at 888.184 kb on - strand, within Sama_0723at 888.184 kb on - strand, within Sama_0723at 888.184 kb on - strand, within Sama_0723at 888.184 kb on - strand, within Sama_0723

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2
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885,344 + -0.3
885,344 + +0.2
885,345 - +1.3
885,345 - -0.4
885,345 - -0.5
885,442 + Sama_0721 0.15 -1.5
885,442 + Sama_0721 0.15 +0.0
885,442 + Sama_0721 0.15 +0.8
885,443 - Sama_0721 0.15 -1.6
885,443 - Sama_0721 0.15 -2.9
885,443 - Sama_0721 0.15 +0.7
885,443 - Sama_0721 0.15 +0.5
885,448 + Sama_0721 0.15 +0.9
885,464 + Sama_0721 0.17 +0.1
885,518 + Sama_0721 0.24 +1.9
885,581 + Sama_0721 0.31 +0.2
885,703 + Sama_0721 0.45 +0.0
885,703 + Sama_0721 0.45 +2.9
885,703 + Sama_0721 0.45 +1.1
885,703 + Sama_0721 0.45 -0.4
885,703 + Sama_0721 0.45 -1.1
885,704 - Sama_0721 0.45 -1.5
885,704 - Sama_0721 0.45 -1.6
885,704 - Sama_0721 0.45 +0.6
885,704 - Sama_0721 0.45 -0.6
885,704 - Sama_0721 0.45 -0.6
885,779 + Sama_0721 0.54 -0.4
885,789 + Sama_0721 0.55 +0.8
885,939 + Sama_0721 0.73 +0.1
885,939 + Sama_0721 0.73 -1.1
885,940 - Sama_0721 0.73 +2.2
886,116 - +0.4
886,116 - +1.3
886,116 - -0.6
886,118 + +0.9
886,119 - -1.6
886,164 + -0.6
886,165 - -0.7
886,335 + +0.4
886,336 - +1.2
886,381 + +1.4
886,381 + -0.4
886,381 + +1.0
886,381 + +0.7
886,381 + +1.9
886,382 - +1.0
886,382 - +3.5
886,640 - Sama_0722 0.35 -0.3
886,640 - Sama_0722 0.35 -1.0
886,775 + Sama_0722 0.50 -1.8
886,776 - Sama_0722 0.50 +0.8
886,830 - Sama_0722 0.56 -2.0
886,858 + Sama_0722 0.59 -1.2
886,859 - Sama_0722 0.59 -0.3
886,887 + Sama_0722 0.62 -2.4
886,888 - Sama_0722 0.63 +0.2
886,910 + Sama_0722 0.65 +0.1
886,910 + Sama_0722 0.65 +0.6
886,911 - Sama_0722 0.65 +1.4
886,918 - Sama_0722 0.66 +0.1
886,943 + Sama_0722 0.69 +1.8
886,944 - Sama_0722 0.69 -2.0
886,978 + Sama_0722 0.73 -0.5
886,978 + Sama_0722 0.73 -1.8
886,978 + Sama_0722 0.73 -0.2
886,979 - Sama_0722 0.73 +2.8
886,979 - Sama_0722 0.73 +0.4
886,991 + Sama_0722 0.74 +0.4
886,991 + Sama_0722 0.74 +0.7
886,991 + Sama_0722 0.74 +0.7
886,992 - Sama_0722 0.74 -1.4
886,992 - Sama_0722 0.74 +1.7
886,992 - Sama_0722 0.74 +0.4
886,992 - Sama_0722 0.74 +0.1
886,992 - Sama_0722 0.74 +1.3
886,992 - Sama_0722 0.74 -0.1
886,992 - Sama_0722 0.74 -1.3
886,992 - Sama_0722 0.74 -2.3
886,992 - Sama_0722 0.74 -0.9
886,992 - Sama_0722 0.74 +0.2
886,992 - Sama_0722 0.74 +2.0
886,992 - Sama_0722 0.74 -0.5
887,063 + Sama_0722 0.82 +2.2
887,063 + Sama_0722 0.82 +0.3
887,063 + Sama_0722 0.82 -1.3
887,063 + Sama_0722 0.82 -0.9
887,063 + Sama_0722 0.82 -1.6
887,064 - Sama_0722 0.82 +1.1
887,074 + Sama_0722 0.84 +0.2
887,106 - Sama_0722 0.87 +1.3
887,110 + Sama_0722 0.88 -0.5
887,110 + Sama_0722 0.88 -1.5
887,110 + Sama_0722 0.88 +1.9
887,110 + Sama_0722 0.88 -0.8
887,110 + Sama_0722 0.88 -0.0
887,110 + Sama_0722 0.88 +0.1
887,111 - Sama_0722 0.88 -0.8
887,111 - Sama_0722 0.88 -1.4
887,111 - Sama_0722 0.88 -0.5
887,111 - Sama_0722 0.88 -0.6
887,111 - Sama_0722 0.88 -1.1
887,111 - Sama_0722 0.88 +0.1
887,174 + -2.5
887,174 + +0.6
887,175 - -0.5
887,175 - +0.0
887,175 - +1.9
887,175 - -1.4
887,175 - -2.8
887,221 + -0.5
887,221 + -0.5
887,222 - -0.6
887,222 - -0.0
887,244 - -1.3
887,246 + +1.2
887,247 - +0.6
887,247 - -1.2
887,293 - +0.7
887,344 + +0.3
887,344 + -0.4
887,344 + +2.8
887,344 + +1.4
887,345 - +0.5
887,392 + -2.8
887,410 + +1.2
887,411 - -1.1
887,411 - +1.7
887,433 - -0.6
887,487 + +1.0
887,487 + -0.0
887,487 + -1.8
887,487 + +1.0
887,488 - -1.9
887,488 - -2.7
887,488 - -2.7
887,488 - -2.6
887,488 - +0.6
887,507 + +0.4
887,507 + -0.2
887,529 + +1.6
887,530 - -1.9
887,533 + +1.1
887,569 - -2.3
887,587 + Sama_0723 0.11 -0.6
887,587 + Sama_0723 0.11 +2.1
887,587 + Sama_0723 0.11 +0.8
887,587 + Sama_0723 0.11 -1.0
887,588 - Sama_0723 0.11 +0.1
887,588 - Sama_0723 0.11 -1.2
887,588 - Sama_0723 0.11 +0.6
887,683 + Sama_0723 0.18 +0.7
887,684 - Sama_0723 0.18 -1.2
887,684 - Sama_0723 0.18 -0.5
887,684 - Sama_0723 0.18 +2.1
887,684 - Sama_0723 0.18 +0.7
887,698 + Sama_0723 0.19 +2.5
887,698 + Sama_0723 0.19 +1.6
887,698 + Sama_0723 0.19 +1.6
887,698 + Sama_0723 0.19 +1.4
887,698 + Sama_0723 0.19 -0.8
887,698 + Sama_0723 0.19 +0.4
887,698 + Sama_0723 0.19 -0.1
887,699 - Sama_0723 0.19 -1.6
887,699 - Sama_0723 0.19 -2.4
887,699 - Sama_0723 0.19 +1.0
887,699 - Sama_0723 0.19 +0.1
887,699 - Sama_0723 0.19 +0.1
887,699 - Sama_0723 0.19 -1.3
887,715 + Sama_0723 0.20 -2.2
887,715 + Sama_0723 0.20 -0.2
887,716 - Sama_0723 0.20 +0.3
887,716 - Sama_0723 0.20 +0.4
887,749 - Sama_0723 0.22 +3.4
887,749 - Sama_0723 0.22 +0.3
887,749 - Sama_0723 0.22 +2.1
887,766 + Sama_0723 0.23 -1.7
887,766 + Sama_0723 0.23 +0.7
887,767 - Sama_0723 0.23 +0.3
887,767 - Sama_0723 0.23 -1.3
887,790 - Sama_0723 0.25 -0.1
887,857 + Sama_0723 0.29 +2.4
887,857 + Sama_0723 0.29 +0.6
887,858 - Sama_0723 0.29 -1.1
887,866 + Sama_0723 0.30 -2.1
887,866 + Sama_0723 0.30 +0.8
887,866 + Sama_0723 0.30 +0.6
887,866 + Sama_0723 0.30 -0.4
887,867 - Sama_0723 0.30 +1.0
887,867 - Sama_0723 0.30 -2.5
887,897 - Sama_0723 0.32 +1.5
887,980 + Sama_0723 0.38 +0.0
888,028 + Sama_0723 0.41 +1.0
888,028 + Sama_0723 0.41 +0.2
888,028 + Sama_0723 0.41 +1.0
888,028 + Sama_0723 0.41 +0.6
888,029 - Sama_0723 0.41 -1.6
888,029 - Sama_0723 0.41 -1.8
888,029 - Sama_0723 0.41 +1.1
888,083 - Sama_0723 0.44 +0.4
888,146 + Sama_0723 0.49 +0.5
888,146 + Sama_0723 0.49 -1.3
888,180 + Sama_0723 0.51 -2.5
888,181 - Sama_0723 0.51 -0.3
888,181 - Sama_0723 0.51 -0.3
888,181 - Sama_0723 0.51 -2.6
888,181 - Sama_0723 0.51 +1.0
888,181 - Sama_0723 0.51 -2.1
888,181 - Sama_0723 0.51 -2.3
888,181 - Sama_0723 0.51 -1.6
888,183 + Sama_0723 0.51 -0.3
888,183 + Sama_0723 0.51 +0.5
888,183 + Sama_0723 0.51 -2.2
888,184 - Sama_0723 0.51 +0.9
888,184 - Sama_0723 0.51 +0.4
888,184 - Sama_0723 0.51 -1.1
888,184 - Sama_0723 0.51 +0.4
888,184 - Sama_0723 0.51 +2.1
888,184 - Sama_0723 0.51 -0.9
888,184 - Sama_0723 0.51 -0.9
888,184 - Sama_0723 0.51 -0.9

Or see this region's nucleotide sequence