Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rumB and Sama_0631 overlap by 32 nucleotides Sama_0631 and Sama_0632 overlap by 4 nucleotides Sama_0632 and Sama_0633 overlap by 16 nucleotides
Sama_0630: rumB - 23S rRNA methyluridine methyltransferase (RefSeq), at 782,438 to 783,592
rumB
Sama_0631: Sama_0631 - signal transduction histidine kinase-like protein (RefSeq), at 783,561 to 784,757
_0631
Sama_0632: Sama_0632 - response regulator receiver protein (RefSeq), at 784,754 to 785,461
_0632
Sama_0633: Sama_0633 - hypothetical protein (RefSeq), at 785,446 to 785,829
_0633
Position (kb) 783
784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 782.705 kb on + strand, within rumB at 782.764 kb on + strand, within rumB at 782.765 kb on - strand, within rumB at 782.803 kb on + strand, within rumB at 782.803 kb on + strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.810 kb on - strand, within rumB at 782.810 kb on - strand, within rumB at 782.845 kb on + strand, within rumB at 782.845 kb on + strand, within rumB at 782.846 kb on - strand, within rumB at 782.846 kb on - strand, within rumB at 782.846 kb on - strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.933 kb on - strand, within rumB at 783.027 kb on + strand, within rumB at 783.027 kb on + strand, within rumB at 783.027 kb on + strand, within rumB at 783.099 kb on + strand, within rumB at 783.100 kb on - strand, within rumB at 783.102 kb on - strand, within rumB at 783.132 kb on + strand, within rumB at 783.132 kb on + strand, within rumB at 783.132 kb on + strand, within rumB at 783.133 kb on - strand, within rumB at 783.133 kb on - strand, within rumB at 783.133 kb on - strand, within rumB at 783.169 kb on - strand, within rumB at 783.280 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.434 kb on + strand, within rumB at 783.435 kb on - strand, within rumB at 783.435 kb on - strand, within rumB at 783.435 kb on - strand, within rumB at 783.445 kb on + strand, within rumB at 783.446 kb on - strand, within rumB at 783.488 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.669 kb on - strand at 783.669 kb on - strand at 783.669 kb on - strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.704 kb on + strand, within Sama_0631 at 783.705 kb on - strand, within Sama_0631 at 783.750 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.816 kb on - strand, within Sama_0631 at 783.816 kb on - strand, within Sama_0631 at 783.818 kb on + strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.821 kb on + strand, within Sama_0631 at 783.850 kb on - strand, within Sama_0631 at 783.875 kb on + strand, within Sama_0631 at 783.875 kb on + strand, within Sama_0631 at 783.876 kb on - strand, within Sama_0631 at 783.940 kb on + strand, within Sama_0631 at 783.940 kb on + strand, within Sama_0631 at 783.941 kb on - strand, within Sama_0631 at 783.941 kb on - strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.953 kb on - strand, within Sama_0631 at 783.953 kb on - strand, within Sama_0631 at 783.966 kb on - strand, within Sama_0631 at 783.966 kb on - strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.162 kb on - strand, within Sama_0631 at 784.173 kb on + strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.405 kb on + strand, within Sama_0631 at 784.405 kb on + strand, within Sama_0631 at 784.406 kb on - strand, within Sama_0631 at 784.406 kb on - strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.429 kb on - strand, within Sama_0631 at 784.429 kb on - strand, within Sama_0631 at 784.484 kb on + strand, within Sama_0631 at 784.499 kb on - strand, within Sama_0631 at 784.563 kb on + strand, within Sama_0631 at 784.563 kb on + strand, within Sama_0631 at 784.564 kb on - strand, within Sama_0631 at 784.583 kb on + strand, within Sama_0631 at 784.652 kb on - strand at 784.657 kb on + strand at 784.657 kb on + strand at 784.657 kb on + strand at 784.657 kb on + strand at 784.657 kb on + strand at 784.658 kb on - strand at 784.658 kb on - strand at 784.658 kb on - strand at 784.658 kb on - strand at 784.658 kb on - strand at 784.678 kb on + strand at 784.679 kb on - strand at 784.682 kb on + strand at 784.688 kb on + strand at 784.688 kb on + strand at 784.688 kb on + strand at 784.724 kb on + strand at 784.724 kb on + strand at 784.724 kb on + strand at 784.724 kb on + strand at 784.725 kb on - strand at 784.757 kb on + strand at 784.757 kb on + strand at 784.757 kb on + strand at 784.757 kb on + strand at 784.757 kb on + strand at 784.757 kb on + strand at 784.758 kb on - strand at 784.758 kb on - strand at 784.804 kb on + strand at 784.805 kb on - strand at 784.805 kb on - strand at 784.843 kb on + strand, within Sama_0632 at 784.843 kb on + strand, within Sama_0632 at 784.843 kb on + strand, within Sama_0632 at 784.843 kb on + strand, within Sama_0632 at 784.844 kb on - strand, within Sama_0632 at 784.844 kb on - strand, within Sama_0632 at 784.844 kb on - strand, within Sama_0632 at 784.844 kb on - strand, within Sama_0632 at 784.904 kb on + strand, within Sama_0632 at 784.904 kb on + strand, within Sama_0632 at 784.905 kb on - strand, within Sama_0632 at 784.905 kb on - strand, within Sama_0632 at 784.905 kb on - strand, within Sama_0632 at 784.934 kb on + strand, within Sama_0632 at 784.934 kb on + strand, within Sama_0632 at 784.934 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.937 kb on + strand, within Sama_0632 at 784.938 kb on - strand, within Sama_0632 at 784.938 kb on - strand, within Sama_0632 at 784.938 kb on - strand, within Sama_0632 at 784.999 kb on - strand, within Sama_0632 at 784.999 kb on - strand, within Sama_0632 at 785.074 kb on + strand, within Sama_0632 at 785.074 kb on + strand, within Sama_0632 at 785.074 kb on + strand, within Sama_0632 at 785.074 kb on + strand, within Sama_0632 at 785.075 kb on - strand, within Sama_0632 at 785.075 kb on - strand, within Sama_0632 at 785.075 kb on - strand, within Sama_0632 at 785.075 kb on - strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.152 kb on + strand, within Sama_0632 at 785.153 kb on - strand, within Sama_0632 at 785.154 kb on + strand, within Sama_0632 at 785.154 kb on + strand, within Sama_0632 at 785.154 kb on + strand, within Sama_0632 at 785.154 kb on + strand, within Sama_0632 at 785.155 kb on - strand, within Sama_0632 at 785.155 kb on - strand, within Sama_0632 at 785.155 kb on - strand, within Sama_0632 at 785.216 kb on - strand, within Sama_0632 at 785.222 kb on - strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.309 kb on + strand, within Sama_0632 at 785.310 kb on - strand, within Sama_0632 at 785.447 kb on + strand at 785.448 kb on - strand at 785.530 kb on + strand, within Sama_0633 at 785.530 kb on + strand, within Sama_0633 at 785.530 kb on + strand, within Sama_0633 at 785.530 kb on + strand, within Sama_0633 at 785.530 kb on + strand, within Sama_0633 at 785.530 kb on + strand, within Sama_0633 at 785.531 kb on - strand, within Sama_0633 at 785.531 kb on - strand, within Sama_0633 at 785.531 kb on - strand, within Sama_0633 at 785.647 kb on - strand, within Sama_0633 at 785.684 kb on + strand, within Sama_0633 at 785.685 kb on - strand, within Sama_0633 at 785.689 kb on + strand, within Sama_0633 at 785.690 kb on - strand, within Sama_0633 at 785.697 kb on + strand, within Sama_0633
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 782,705 + rumB Sama_0630 0.23 -2.6 782,764 + rumB Sama_0630 0.28 +0.5 782,765 - rumB Sama_0630 0.28 +0.7 782,803 + rumB Sama_0630 0.32 -2.3 782,803 + rumB Sama_0630 0.32 -2.3 782,804 - rumB Sama_0630 0.32 -0.3 782,804 - rumB Sama_0630 0.32 +1.2 782,804 - rumB Sama_0630 0.32 -1.2 782,804 - rumB Sama_0630 0.32 +1.9 782,804 - rumB Sama_0630 0.32 +1.9 782,804 - rumB Sama_0630 0.32 +0.1 782,810 - rumB Sama_0630 0.32 -1.7 782,810 - rumB Sama_0630 0.32 -0.1 782,845 + rumB Sama_0630 0.35 +1.0 782,845 + rumB Sama_0630 0.35 -2.5 782,846 - rumB Sama_0630 0.35 -1.2 782,846 - rumB Sama_0630 0.35 +0.7 782,846 - rumB Sama_0630 0.35 -1.2 782,932 + rumB Sama_0630 0.43 -0.4 782,932 + rumB Sama_0630 0.43 -1.8 782,932 + rumB Sama_0630 0.43 +0.7 782,932 + rumB Sama_0630 0.43 -1.4 782,933 - rumB Sama_0630 0.43 -0.6 783,027 + rumB Sama_0630 0.51 +0.2 783,027 + rumB Sama_0630 0.51 -2.6 783,027 + rumB Sama_0630 0.51 -2.5 783,099 + rumB Sama_0630 0.57 +0.9 783,100 - rumB Sama_0630 0.57 -2.0 783,102 - rumB Sama_0630 0.57 -1.5 783,132 + rumB Sama_0630 0.60 -1.2 783,132 + rumB Sama_0630 0.60 -0.9 783,132 + rumB Sama_0630 0.60 -0.8 783,133 - rumB Sama_0630 0.60 -1.7 783,133 - rumB Sama_0630 0.60 -0.1 783,133 - rumB Sama_0630 0.60 -0.8 783,169 - rumB Sama_0630 0.63 -1.0 783,280 + rumB Sama_0630 0.73 +1.7 783,357 + rumB Sama_0630 0.80 +1.0 783,357 + rumB Sama_0630 0.80 -1.1 783,357 + rumB Sama_0630 0.80 +0.5 783,357 + rumB Sama_0630 0.80 -0.3 783,434 + rumB Sama_0630 0.86 +0.5 783,435 - rumB Sama_0630 0.86 -1.1 783,435 - rumB Sama_0630 0.86 -1.6 783,435 - rumB Sama_0630 0.86 -0.4 783,445 + rumB Sama_0630 0.87 -1.3 783,446 - rumB Sama_0630 0.87 -1.6 783,488 + -1.3 783,668 + +1.7 783,668 + -2.2 783,668 + -0.1 783,668 + -0.7 783,668 + -1.1 783,668 + -0.5 783,668 + +1.3 783,669 - +1.0 783,669 - +0.6 783,669 - +1.2 783,670 + -0.5 783,670 + -2.3 783,670 + -0.6 783,670 + -1.2 783,670 + -1.3 783,670 + +0.7 783,670 + +1.2 783,670 + -2.2 783,671 - +0.4 783,671 - +3.1 783,671 - -0.4 783,671 - -0.8 783,671 - -0.3 783,704 + Sama_0631 0.12 -0.6 783,705 - Sama_0631 0.12 -0.2 783,750 + Sama_0631 0.16 +2.3 783,815 + Sama_0631 0.21 +1.7 783,815 + Sama_0631 0.21 +3.1 783,815 + Sama_0631 0.21 +0.5 783,816 - Sama_0631 0.21 -3.7 783,816 - Sama_0631 0.21 +2.2 783,818 + Sama_0631 0.21 +2.3 783,819 - Sama_0631 0.22 +4.4 783,819 - Sama_0631 0.22 +0.5 783,819 - Sama_0631 0.22 +1.7 783,819 - Sama_0631 0.22 -0.3 783,819 - Sama_0631 0.22 -1.4 783,821 + Sama_0631 0.22 -0.6 783,850 - Sama_0631 0.24 -0.6 783,875 + Sama_0631 0.26 +0.0 783,875 + Sama_0631 0.26 +0.7 783,876 - Sama_0631 0.26 -0.8 783,940 + Sama_0631 0.32 -0.6 783,940 + Sama_0631 0.32 +0.5 783,941 - Sama_0631 0.32 +1.2 783,941 - Sama_0631 0.32 -3.3 783,952 + Sama_0631 0.33 +0.7 783,952 + Sama_0631 0.33 -0.2 783,952 + Sama_0631 0.33 -2.6 783,952 + Sama_0631 0.33 -0.6 783,952 + Sama_0631 0.33 +0.1 783,952 + Sama_0631 0.33 +0.6 783,952 + Sama_0631 0.33 -1.2 783,953 - Sama_0631 0.33 -1.3 783,953 - Sama_0631 0.33 -0.8 783,966 - Sama_0631 0.34 -0.3 783,966 - Sama_0631 0.34 +1.2 784,054 + Sama_0631 0.41 +0.7 784,054 + Sama_0631 0.41 +0.0 784,054 + Sama_0631 0.41 +2.3 784,054 + Sama_0631 0.41 -2.4 784,054 + Sama_0631 0.41 -0.9 784,054 + Sama_0631 0.41 +0.1 784,055 - Sama_0631 0.41 -0.2 784,055 - Sama_0631 0.41 +1.5 784,055 - Sama_0631 0.41 +1.5 784,162 - Sama_0631 0.50 -1.2 784,173 + Sama_0631 0.51 -2.3 784,174 - Sama_0631 0.51 -0.3 784,174 - Sama_0631 0.51 -1.1 784,174 - Sama_0631 0.51 +0.2 784,174 - Sama_0631 0.51 +0.2 784,267 + Sama_0631 0.59 +0.9 784,267 + Sama_0631 0.59 +0.5 784,267 + Sama_0631 0.59 -1.2 784,405 + Sama_0631 0.71 +0.9 784,405 + Sama_0631 0.71 +0.7 784,406 - Sama_0631 0.71 -0.9 784,406 - Sama_0631 0.71 -0.3 784,428 + Sama_0631 0.72 -3.0 784,428 + Sama_0631 0.72 -1.3 784,428 + Sama_0631 0.72 +0.5 784,429 - Sama_0631 0.73 -2.2 784,429 - Sama_0631 0.73 +1.7 784,484 + Sama_0631 0.77 -3.6 784,499 - Sama_0631 0.78 +0.6 784,563 + Sama_0631 0.84 +0.6 784,563 + Sama_0631 0.84 -0.6 784,564 - Sama_0631 0.84 -2.0 784,583 + Sama_0631 0.85 -0.8 784,652 - -0.8 784,657 + -0.7 784,657 + +0.2 784,657 + -0.3 784,657 + +1.0 784,657 + -0.4 784,658 - +0.7 784,658 - +0.0 784,658 - +0.7 784,658 - +1.3 784,658 - -1.1 784,678 + -1.1 784,679 - +2.2 784,682 + -1.1 784,688 + -0.1 784,688 + -0.4 784,688 + -1.0 784,724 + -1.6 784,724 + +1.2 784,724 + -2.1 784,724 + -1.0 784,725 - +1.8 784,757 + -0.3 784,757 + -0.1 784,757 + -0.1 784,757 + -0.1 784,757 + -0.8 784,757 + +0.0 784,758 - -0.8 784,758 - -0.1 784,804 + +1.7 784,805 - -0.4 784,805 - +1.0 784,843 + Sama_0632 0.13 +1.5 784,843 + Sama_0632 0.13 -1.7 784,843 + Sama_0632 0.13 -0.8 784,843 + Sama_0632 0.13 +1.7 784,844 - Sama_0632 0.13 +1.3 784,844 - Sama_0632 0.13 +1.5 784,844 - Sama_0632 0.13 +2.0 784,844 - Sama_0632 0.13 -0.8 784,904 + Sama_0632 0.21 -1.7 784,904 + Sama_0632 0.21 -1.4 784,905 - Sama_0632 0.21 +1.4 784,905 - Sama_0632 0.21 -0.3 784,905 - Sama_0632 0.21 +0.2 784,934 + Sama_0632 0.25 +0.3 784,934 + Sama_0632 0.25 +0.3 784,934 + Sama_0632 0.25 -1.6 784,937 + Sama_0632 0.26 +0.2 784,937 + Sama_0632 0.26 -1.4 784,937 + Sama_0632 0.26 -2.0 784,937 + Sama_0632 0.26 +0.2 784,937 + Sama_0632 0.26 -1.6 784,937 + Sama_0632 0.26 +0.9 784,937 + Sama_0632 0.26 -2.8 784,937 + Sama_0632 0.26 -0.5 784,938 - Sama_0632 0.26 +3.8 784,938 - Sama_0632 0.26 -1.9 784,938 - Sama_0632 0.26 +0.3 784,999 - Sama_0632 0.35 +1.7 784,999 - Sama_0632 0.35 -0.1 785,074 + Sama_0632 0.45 -0.8 785,074 + Sama_0632 0.45 +0.4 785,074 + Sama_0632 0.45 -1.7 785,074 + Sama_0632 0.45 -2.6 785,075 - Sama_0632 0.45 -1.3 785,075 - Sama_0632 0.45 +0.6 785,075 - Sama_0632 0.45 -0.8 785,075 - Sama_0632 0.45 +1.6 785,152 + Sama_0632 0.56 -0.3 785,152 + Sama_0632 0.56 -1.8 785,152 + Sama_0632 0.56 +0.3 785,152 + Sama_0632 0.56 -0.6 785,152 + Sama_0632 0.56 +0.7 785,152 + Sama_0632 0.56 -0.6 785,153 - Sama_0632 0.56 +1.0 785,154 + Sama_0632 0.56 -2.1 785,154 + Sama_0632 0.56 -0.1 785,154 + Sama_0632 0.56 +3.4 785,154 + Sama_0632 0.56 +0.5 785,155 - Sama_0632 0.57 +0.8 785,155 - Sama_0632 0.57 -1.6 785,155 - Sama_0632 0.57 +3.0 785,216 - Sama_0632 0.65 -0.3 785,222 - Sama_0632 0.66 +0.1 785,309 + Sama_0632 0.78 +1.2 785,309 + Sama_0632 0.78 +0.9 785,309 + Sama_0632 0.78 -1.4 785,309 + Sama_0632 0.78 +0.5 785,309 + Sama_0632 0.78 -1.1 785,309 + Sama_0632 0.78 +0.2 785,310 - Sama_0632 0.79 -1.0 785,447 + -0.7 785,448 - -0.6 785,530 + Sama_0633 0.22 -1.8 785,530 + Sama_0633 0.22 -2.0 785,530 + Sama_0633 0.22 -1.0 785,530 + Sama_0633 0.22 -0.8 785,530 + Sama_0633 0.22 -2.2 785,530 + Sama_0633 0.22 +2.6 785,531 - Sama_0633 0.22 -3.1 785,531 - Sama_0633 0.22 -1.0 785,531 - Sama_0633 0.22 -0.6 785,647 - Sama_0633 0.52 -0.0 785,684 + Sama_0633 0.62 +2.3 785,685 - Sama_0633 0.62 -2.3 785,689 + Sama_0633 0.63 -0.2 785,690 - Sama_0633 0.64 -1.1 785,697 + Sama_0633 0.65 -1.3
Or see this region's nucleotide sequence