Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0553 and Sama_0554 are separated by 648 nucleotides Sama_0554 and Sama_0555 are separated by 197 nucleotides
Sama_0553: Sama_0553 - no description, at 681,371 to 681,559
_0553
Sama_0554: Sama_0554 - putative transcriptional regulator, CadC (RefSeq), at 682,208 to 684,316
_0554
Sama_0555: Sama_0555 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 684,514 to 688,713
_0555
Position (kb) 682
683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 681.225 kb on + strand at 681.243 kb on + strand at 681.244 kb on - strand at 681.273 kb on + strand at 681.273 kb on + strand at 681.273 kb on + strand at 681.274 kb on - strand at 681.274 kb on - strand at 681.274 kb on - strand at 681.274 kb on - strand at 681.274 kb on - strand at 681.281 kb on + strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.295 kb on + strand at 681.295 kb on + strand at 681.296 kb on - strand at 681.296 kb on - strand at 681.296 kb on - strand at 681.341 kb on - strand at 681.372 kb on + strand at 681.395 kb on - strand, within Sama_0553 at 681.395 kb on - strand, within Sama_0553 at 681.395 kb on - strand, within Sama_0553 at 681.395 kb on - strand, within Sama_0553 at 681.398 kb on + strand, within Sama_0553 at 681.399 kb on - strand, within Sama_0553 at 681.399 kb on - strand, within Sama_0553 at 681.399 kb on - strand, within Sama_0553 at 681.440 kb on + strand, within Sama_0553 at 681.441 kb on - strand, within Sama_0553 at 681.441 kb on - strand, within Sama_0553 at 681.441 kb on - strand, within Sama_0553 at 681.447 kb on + strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.475 kb on - strand, within Sama_0553 at 681.577 kb on + strand at 681.580 kb on + strand at 681.580 kb on + strand at 681.580 kb on + strand at 681.585 kb on + strand at 681.586 kb on - strand at 681.586 kb on - strand at 681.586 kb on - strand at 681.636 kb on - strand at 681.649 kb on + strand at 681.767 kb on - strand at 681.795 kb on - strand at 681.874 kb on - strand at 681.971 kb on + strand at 681.976 kb on - strand at 681.979 kb on - strand at 682.027 kb on + strand at 682.046 kb on + strand at 682.084 kb on + strand at 682.085 kb on - strand at 682.104 kb on + strand at 682.175 kb on + strand at 682.201 kb on + strand at 682.206 kb on - strand at 682.245 kb on + strand at 682.246 kb on - strand at 682.340 kb on - strand at 682.373 kb on + strand at 682.373 kb on + strand at 682.397 kb on - strand at 682.402 kb on - strand at 682.404 kb on + strand at 682.405 kb on - strand at 682.505 kb on - strand, within Sama_0554 at 682.505 kb on - strand, within Sama_0554 at 682.532 kb on + strand, within Sama_0554 at 682.533 kb on - strand, within Sama_0554 at 682.560 kb on + strand, within Sama_0554 at 682.562 kb on + strand, within Sama_0554 at 682.563 kb on - strand, within Sama_0554 at 682.563 kb on - strand, within Sama_0554 at 682.563 kb on - strand, within Sama_0554 at 682.563 kb on - strand, within Sama_0554 at 682.640 kb on - strand, within Sama_0554 at 682.718 kb on - strand, within Sama_0554 at 682.722 kb on - strand, within Sama_0554 at 682.742 kb on - strand, within Sama_0554 at 682.749 kb on + strand, within Sama_0554 at 682.749 kb on + strand, within Sama_0554 at 682.750 kb on - strand, within Sama_0554 at 682.750 kb on - strand, within Sama_0554 at 682.751 kb on + strand, within Sama_0554 at 682.838 kb on + strand, within Sama_0554 at 682.841 kb on - strand, within Sama_0554 at 682.884 kb on - strand, within Sama_0554 at 682.950 kb on + strand, within Sama_0554 at 682.950 kb on + strand, within Sama_0554 at 683.012 kb on + strand, within Sama_0554 at 683.017 kb on + strand, within Sama_0554 at 683.068 kb on + strand, within Sama_0554 at 683.093 kb on + strand, within Sama_0554 at 683.127 kb on - strand, within Sama_0554 at 683.128 kb on + strand, within Sama_0554 at 683.225 kb on - strand, within Sama_0554 at 683.287 kb on - strand, within Sama_0554 at 683.435 kb on + strand, within Sama_0554 at 683.502 kb on + strand, within Sama_0554 at 683.503 kb on - strand, within Sama_0554 at 683.503 kb on - strand, within Sama_0554 at 683.503 kb on - strand, within Sama_0554 at 683.515 kb on + strand, within Sama_0554 at 683.516 kb on - strand, within Sama_0554 at 683.519 kb on + strand, within Sama_0554 at 683.519 kb on + strand, within Sama_0554 at 683.519 kb on + strand, within Sama_0554 at 683.519 kb on + strand, within Sama_0554 at 683.520 kb on - strand, within Sama_0554 at 683.558 kb on + strand, within Sama_0554 at 683.592 kb on + strand, within Sama_0554 at 683.593 kb on - strand, within Sama_0554 at 683.593 kb on - strand, within Sama_0554 at 683.593 kb on - strand, within Sama_0554 at 683.606 kb on - strand, within Sama_0554 at 683.640 kb on + strand, within Sama_0554 at 683.640 kb on + strand, within Sama_0554 at 683.684 kb on + strand, within Sama_0554 at 683.692 kb on + strand, within Sama_0554 at 683.697 kb on + strand, within Sama_0554 at 683.697 kb on + strand, within Sama_0554 at 683.707 kb on + strand, within Sama_0554 at 683.877 kb on + strand, within Sama_0554 at 683.877 kb on + strand, within Sama_0554 at 683.878 kb on - strand, within Sama_0554 at 683.878 kb on - strand, within Sama_0554 at 683.878 kb on - strand, within Sama_0554 at 683.965 kb on + strand, within Sama_0554 at 683.978 kb on + strand, within Sama_0554 at 683.991 kb on + strand, within Sama_0554 at 684.013 kb on + strand, within Sama_0554 at 684.014 kb on - strand, within Sama_0554 at 684.017 kb on + strand, within Sama_0554 at 684.018 kb on - strand, within Sama_0554 at 684.047 kb on - strand, within Sama_0554 at 684.076 kb on + strand, within Sama_0554 at 684.079 kb on + strand, within Sama_0554 at 684.080 kb on - strand, within Sama_0554 at 684.080 kb on - strand, within Sama_0554 at 684.080 kb on - strand, within Sama_0554 at 684.080 kb on - strand, within Sama_0554 at 684.080 kb on - strand, within Sama_0554 at 684.081 kb on + strand, within Sama_0554 at 684.082 kb on - strand, within Sama_0554 at 684.082 kb on - strand, within Sama_0554 at 684.082 kb on - strand, within Sama_0554 at 684.125 kb on + strand at 684.126 kb on - strand at 684.238 kb on + strand at 684.263 kb on + strand at 684.334 kb on + strand at 684.335 kb on - strand at 684.335 kb on - strand at 684.335 kb on - strand at 684.337 kb on + strand at 684.337 kb on + strand at 684.338 kb on - strand at 684.345 kb on + strand at 684.345 kb on + strand at 684.352 kb on + strand at 684.359 kb on + strand at 684.393 kb on - strand at 684.417 kb on + strand at 684.433 kb on - strand at 684.479 kb on - strand at 684.496 kb on - strand at 684.506 kb on + strand at 684.506 kb on + strand at 684.506 kb on + strand at 684.506 kb on + strand at 684.507 kb on - strand at 684.507 kb on - strand at 684.507 kb on - strand at 684.512 kb on - strand at 684.512 kb on - strand at 684.512 kb on - strand at 684.519 kb on + strand at 684.520 kb on - strand at 684.529 kb on + strand at 684.529 kb on + strand at 684.550 kb on + strand at 684.550 kb on + strand at 684.551 kb on - strand at 684.585 kb on + strand at 684.654 kb on + strand at 684.655 kb on - strand at 684.655 kb on - strand at 684.655 kb on - strand at 684.748 kb on + strand at 684.748 kb on + strand at 684.749 kb on - strand at 684.749 kb on - strand at 684.762 kb on + strand at 684.785 kb on + strand at 684.785 kb on + strand at 684.867 kb on + strand at 684.867 kb on + strand at 684.868 kb on - strand at 684.951 kb on + strand, within Sama_0555 at 685.016 kb on - strand, within Sama_0555 at 685.023 kb on + strand, within Sama_0555 at 685.023 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.092 kb on - strand, within Sama_0555 at 685.092 kb on - strand, within Sama_0555 at 685.185 kb on + strand, within Sama_0555 at 685.185 kb on + strand, within Sama_0555 at 685.185 kb on + strand, within Sama_0555 at 685.185 kb on + strand, within Sama_0555 at 685.185 kb on + strand, within Sama_0555 at 685.186 kb on - strand, within Sama_0555
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 681,225 + +0.4 681,243 + -0.8 681,244 - -1.4 681,273 + +2.6 681,273 + -0.5 681,273 + +0.2 681,274 - +0.8 681,274 - -1.1 681,274 - -1.5 681,274 - +0.6 681,274 - +1.1 681,281 + -0.3 681,282 - -1.8 681,282 - -0.1 681,282 - -0.2 681,282 - -0.2 681,282 - +0.3 681,282 - +0.3 681,282 - -0.7 681,295 + -1.8 681,295 + -2.0 681,296 - -1.2 681,296 - +0.1 681,296 - -0.2 681,341 - +0.7 681,372 + +0.7 681,395 - Sama_0553 0.13 -1.2 681,395 - Sama_0553 0.13 -2.4 681,395 - Sama_0553 0.13 +0.7 681,395 - Sama_0553 0.13 +0.5 681,398 + Sama_0553 0.14 +0.3 681,399 - Sama_0553 0.15 -1.3 681,399 - Sama_0553 0.15 -1.2 681,399 - Sama_0553 0.15 +0.2 681,440 + Sama_0553 0.37 -1.0 681,441 - Sama_0553 0.37 -1.4 681,441 - Sama_0553 0.37 -0.6 681,441 - Sama_0553 0.37 +0.6 681,447 + Sama_0553 0.40 -0.2 681,448 - Sama_0553 0.41 +0.4 681,448 - Sama_0553 0.41 +2.2 681,448 - Sama_0553 0.41 -1.5 681,448 - Sama_0553 0.41 -1.9 681,448 - Sama_0553 0.41 -0.8 681,448 - Sama_0553 0.41 +0.7 681,475 - Sama_0553 0.55 +1.3 681,577 + -0.3 681,580 + -0.4 681,580 + +1.5 681,580 + -0.9 681,585 + -0.6 681,586 - -2.0 681,586 - -0.5 681,586 - -0.5 681,636 - -0.8 681,649 + +3.9 681,767 - +0.7 681,795 - -0.0 681,874 - -1.0 681,971 + -0.3 681,976 - +1.8 681,979 - -1.0 682,027 + -1.0 682,046 + +0.1 682,084 + -1.7 682,085 - +0.9 682,104 + +1.4 682,175 + -2.1 682,201 + -0.9 682,206 - +0.1 682,245 + -0.3 682,246 - +0.7 682,340 - +2.4 682,373 + +3.0 682,373 + -0.4 682,397 - +0.9 682,402 - -0.3 682,404 + -1.2 682,405 - +1.4 682,505 - Sama_0554 0.14 +0.8 682,505 - Sama_0554 0.14 -1.1 682,532 + Sama_0554 0.15 +0.9 682,533 - Sama_0554 0.15 +0.8 682,560 + Sama_0554 0.17 -1.7 682,562 + Sama_0554 0.17 -0.2 682,563 - Sama_0554 0.17 -1.4 682,563 - Sama_0554 0.17 -1.8 682,563 - Sama_0554 0.17 +0.9 682,563 - Sama_0554 0.17 +0.0 682,640 - Sama_0554 0.20 +2.2 682,718 - Sama_0554 0.24 +1.0 682,722 - Sama_0554 0.24 -1.9 682,742 - Sama_0554 0.25 -2.1 682,749 + Sama_0554 0.26 -1.8 682,749 + Sama_0554 0.26 -0.2 682,750 - Sama_0554 0.26 -2.3 682,750 - Sama_0554 0.26 -0.2 682,751 + Sama_0554 0.26 -0.8 682,838 + Sama_0554 0.30 +0.2 682,841 - Sama_0554 0.30 +0.8 682,884 - Sama_0554 0.32 -0.8 682,950 + Sama_0554 0.35 +0.8 682,950 + Sama_0554 0.35 -0.0 683,012 + Sama_0554 0.38 -0.5 683,017 + Sama_0554 0.38 -0.2 683,068 + Sama_0554 0.41 -0.1 683,093 + Sama_0554 0.42 +0.6 683,127 - Sama_0554 0.44 +0.2 683,128 + Sama_0554 0.44 -1.0 683,225 - Sama_0554 0.48 -0.8 683,287 - Sama_0554 0.51 +0.0 683,435 + Sama_0554 0.58 -1.2 683,502 + Sama_0554 0.61 +0.4 683,503 - Sama_0554 0.61 +1.0 683,503 - Sama_0554 0.61 -2.3 683,503 - Sama_0554 0.61 +1.1 683,515 + Sama_0554 0.62 +0.5 683,516 - Sama_0554 0.62 -1.8 683,519 + Sama_0554 0.62 -1.7 683,519 + Sama_0554 0.62 -0.2 683,519 + Sama_0554 0.62 +0.7 683,519 + Sama_0554 0.62 +2.2 683,520 - Sama_0554 0.62 +0.6 683,558 + Sama_0554 0.64 -1.1 683,592 + Sama_0554 0.66 +0.1 683,593 - Sama_0554 0.66 -0.3 683,593 - Sama_0554 0.66 -1.3 683,593 - Sama_0554 0.66 +2.1 683,606 - Sama_0554 0.66 -2.2 683,640 + Sama_0554 0.68 +3.0 683,640 + Sama_0554 0.68 -2.9 683,684 + Sama_0554 0.70 +0.1 683,692 + Sama_0554 0.70 -1.8 683,697 + Sama_0554 0.71 -1.4 683,697 + Sama_0554 0.71 +0.2 683,707 + Sama_0554 0.71 +3.1 683,877 + Sama_0554 0.79 +0.4 683,877 + Sama_0554 0.79 +0.2 683,878 - Sama_0554 0.79 -1.9 683,878 - Sama_0554 0.79 -0.2 683,878 - Sama_0554 0.79 +0.9 683,965 + Sama_0554 0.83 +1.2 683,978 + Sama_0554 0.84 +0.6 683,991 + Sama_0554 0.85 -0.6 684,013 + Sama_0554 0.86 -2.7 684,014 - Sama_0554 0.86 +1.1 684,017 + Sama_0554 0.86 -1.4 684,018 - Sama_0554 0.86 +1.0 684,047 - Sama_0554 0.87 +1.9 684,076 + Sama_0554 0.89 +0.4 684,079 + Sama_0554 0.89 -0.1 684,080 - Sama_0554 0.89 -0.1 684,080 - Sama_0554 0.89 -0.6 684,080 - Sama_0554 0.89 -3.0 684,080 - Sama_0554 0.89 +0.6 684,080 - Sama_0554 0.89 -2.0 684,081 + Sama_0554 0.89 -0.2 684,082 - Sama_0554 0.89 -0.2 684,082 - Sama_0554 0.89 +1.9 684,082 - Sama_0554 0.89 +0.5 684,125 + -0.8 684,126 - -0.6 684,238 + -1.4 684,263 + +1.7 684,334 + +0.1 684,335 - -2.0 684,335 - -1.3 684,335 - -1.4 684,337 + +0.9 684,337 + +0.0 684,338 - -0.3 684,345 + +3.0 684,345 + +1.4 684,352 + -1.9 684,359 + -2.0 684,393 - -2.2 684,417 + +1.7 684,433 - +1.3 684,479 - -0.8 684,496 - -2.0 684,506 + -2.0 684,506 + +1.0 684,506 + -1.7 684,506 + -1.4 684,507 - +1.1 684,507 - +1.7 684,507 - +0.5 684,512 - +1.3 684,512 - +1.2 684,512 - -0.2 684,519 + -0.1 684,520 - -1.4 684,529 + -1.6 684,529 + +1.2 684,550 + -0.2 684,550 + -1.1 684,551 - +1.0 684,585 + -1.6 684,654 + +0.6 684,655 - -0.2 684,655 - +2.5 684,655 - -0.2 684,748 + -2.8 684,748 + -0.2 684,749 - -1.7 684,749 - +0.5 684,762 + +1.5 684,785 + +1.8 684,785 + -1.8 684,867 + +0.4 684,867 + +0.2 684,868 - -1.6 684,951 + Sama_0555 0.10 -1.0 685,016 - Sama_0555 0.12 -2.3 685,023 + Sama_0555 0.12 -0.5 685,023 + Sama_0555 0.12 +0.2 685,072 + Sama_0555 0.13 -1.4 685,072 + Sama_0555 0.13 +1.0 685,072 + Sama_0555 0.13 -0.2 685,072 + Sama_0555 0.13 +0.7 685,072 + Sama_0555 0.13 -1.6 685,072 + Sama_0555 0.13 -1.6 685,072 + Sama_0555 0.13 +0.8 685,073 - Sama_0555 0.13 +2.0 685,073 - Sama_0555 0.13 -0.0 685,073 - Sama_0555 0.13 -1.6 685,073 - Sama_0555 0.13 +0.3 685,073 - Sama_0555 0.13 +0.8 685,073 - Sama_0555 0.13 +0.1 685,091 + Sama_0555 0.14 -1.4 685,091 + Sama_0555 0.14 +2.3 685,091 + Sama_0555 0.14 +0.4 685,091 + Sama_0555 0.14 -1.0 685,091 + Sama_0555 0.14 +0.5 685,091 + Sama_0555 0.14 -1.6 685,091 + Sama_0555 0.14 +1.2 685,092 - Sama_0555 0.14 -0.6 685,092 - Sama_0555 0.14 +1.2 685,185 + Sama_0555 0.16 -0.8 685,185 + Sama_0555 0.16 -1.3 685,185 + Sama_0555 0.16 +1.3 685,185 + Sama_0555 0.16 +0.9 685,185 + Sama_0555 0.16 +1.4 685,186 - Sama_0555 0.16 -1.7
Or see this region's nucleotide sequence