Strain Fitness in Shewanella amazonensis SB2B around Sama_0553

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
680,393	-		Sama_0552	0.90	+0.4
680,493	-				+3.6
680,493	-				+0.9
680,493	-				+1.9
680,496	+				+0.8
680,496	+				-1.0
680,496	+				-1.0
680,496	+				-2.7
680,496	+				-3.0
680,496	+				+0.2
680,497	-				+1.7
680,497	-				-0.1
680,497	-				+0.8
680,497	-				-2.2
680,497	-				+2.5
680,497	-				+1.4
680,503	+				-2.6
680,538	+				+1.1
680,554	+				+1.4
680,554	+				-0.5
680,555	-				-1.1
680,572	-				+1.1
680,600	+				+0.6
680,633	+				-0.9
680,633	+				-1.8
680,633	+				+2.2
680,633	+				-1.0
680,633	+				+0.1
680,633	+				+0.8
680,634	-				-1.2
680,634	-				-0.3
680,634	-				-0.4
680,634	-				-1.3
680,634	-				+3.1
680,653	-				+0.4
680,717	+				+0.8
680,717	+				-1.4
680,783	+		Sama_R0031	0.57	-1.0
680,926	+				-0.1
680,934	+				+3.4
680,934	+				+0.8
680,934	+				+1.9
680,934	+				-1.0
680,934	+				+0.5
680,934	+				+0.4
680,934	+				+0.9
680,935	-				+2.6
680,935	-				-0.2
680,948	-				+1.1
680,948	-				-0.2
680,948	-				+1.3
681,059	-				+2.1
681,174	+				-1.0
681,175	-				+0.0
681,225	+				+0.4
681,243	+				-0.8
681,244	-				-1.4
681,273	+				+2.6
681,273	+				-0.5
681,273	+				+0.2
681,274	-				+0.8
681,274	-				-1.1
681,274	-				-1.5
681,274	-				+0.6
681,274	-				+1.1
681,281	+				-0.3
681,282	-				-1.8
681,282	-				-0.1
681,282	-				-0.2
681,282	-				-0.2
681,282	-				+0.3
681,282	-				+0.3
681,282	-				-0.7
681,295	+				-1.8
681,295	+				-2.0
681,296	-				-1.2
681,296	-				+0.1
681,296	-				-0.2
681,341	-				+0.7
681,372	+				+0.7
681,395	-		Sama_0553	0.13	-1.2
681,395	-		Sama_0553	0.13	-2.4
681,395	-		Sama_0553	0.13	+0.7
681,395	-		Sama_0553	0.13	+0.5
681,398	+		Sama_0553	0.14	+0.3
681,399	-		Sama_0553	0.15	-1.3
681,399	-		Sama_0553	0.15	-1.2
681,399	-		Sama_0553	0.15	+0.2
681,440	+		Sama_0553	0.37	-1.0
681,441	-		Sama_0553	0.37	-1.4
681,441	-		Sama_0553	0.37	-0.6
681,441	-		Sama_0553	0.37	+0.6
681,447	+		Sama_0553	0.40	-0.2
681,448	-		Sama_0553	0.41	+0.4
681,448	-		Sama_0553	0.41	+2.2
681,448	-		Sama_0553	0.41	-1.5
681,448	-		Sama_0553	0.41	-1.9
681,448	-		Sama_0553	0.41	-0.8
681,448	-		Sama_0553	0.41	+0.7
681,475	-		Sama_0553	0.55	+1.3
681,577	+				-0.3
681,580	+				-0.4
681,580	+				+1.5
681,580	+				-0.9
681,585	+				-0.6
681,586	-				-2.0
681,586	-				-0.5
681,586	-				-0.5
681,636	-				-0.8
681,649	+				+3.9
681,767	-				+0.7
681,795	-				-0.0
681,874	-				-1.0
681,971	+				-0.3
681,976	-				+1.8
681,979	-				-1.0
682,027	+				-1.0
682,046	+				+0.1
682,084	+				-1.7
682,085	-				+0.9
682,104	+				+1.4
682,175	+				-2.1
682,201	+				-0.9
682,206	-				+0.1
682,245	+				-0.3
682,246	-				+0.7
682,340	-				+2.4
682,373	+				+3.0
682,373	+				-0.4
682,397	-				+0.9
682,402	-				-0.3
682,404	+				-1.2
682,405	-				+1.4
682,505	-		Sama_0554	0.14	+0.8
682,505	-		Sama_0554	0.14	-1.1
682,532	+		Sama_0554	0.15	+0.9
682,533	-		Sama_0554	0.15	+0.8