Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0547 and Sama_0548 are separated by 169 nucleotides Sama_0548 and Sama_0549 are separated by 96 nucleotides Sama_0549 and Sama_0550 are separated by 245 nucleotides
Sama_0547: Sama_0547 - sensor histidine kinase (RefSeq), at 673,156 to 674,799
_0547
Sama_0548: Sama_0548 - hypothetical protein (RefSeq), at 674,969 to 675,589
_0548
Sama_0549: Sama_0549 - hypothetical protein (RefSeq), at 675,686 to 675,814
_0549
Sama_0550: Sama_0550 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 676,060 to 677,616
_0550
Position (kb) 675
676 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 674.718 kb on + strand at 674.806 kb on + strand at 674.806 kb on + strand at 674.807 kb on - strand at 674.810 kb on + strand at 674.810 kb on + strand at 674.811 kb on - strand at 674.831 kb on + strand at 674.831 kb on + strand at 674.831 kb on + strand at 674.832 kb on - strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.835 kb on + strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.836 kb on - strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.837 kb on + strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.838 kb on - strand at 674.843 kb on + strand at 674.843 kb on + strand at 674.843 kb on + strand at 674.843 kb on + strand at 674.844 kb on - strand at 674.844 kb on - strand at 674.844 kb on - strand at 674.853 kb on - strand at 674.856 kb on - strand at 674.897 kb on + strand at 674.897 kb on + strand at 674.897 kb on + strand at 674.898 kb on - strand at 674.905 kb on - strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.917 kb on + strand at 674.925 kb on + strand at 674.925 kb on + strand at 674.926 kb on - strand at 675.026 kb on - strand at 675.048 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.135 kb on + strand, within Sama_0548 at 675.136 kb on - strand, within Sama_0548 at 675.136 kb on - strand, within Sama_0548 at 675.141 kb on + strand, within Sama_0548 at 675.142 kb on - strand, within Sama_0548 at 675.206 kb on - strand, within Sama_0548 at 675.212 kb on + strand, within Sama_0548 at 675.212 kb on + strand, within Sama_0548 at 675.212 kb on + strand, within Sama_0548 at 675.212 kb on + strand, within Sama_0548 at 675.250 kb on + strand, within Sama_0548 at 675.251 kb on - strand, within Sama_0548 at 675.317 kb on - strand, within Sama_0548 at 675.334 kb on - strand, within Sama_0548 at 675.370 kb on + strand, within Sama_0548 at 675.371 kb on - strand, within Sama_0548 at 675.371 kb on - strand, within Sama_0548 at 675.401 kb on + strand, within Sama_0548 at 675.401 kb on + strand, within Sama_0548 at 675.401 kb on + strand, within Sama_0548 at 675.401 kb on + strand, within Sama_0548 at 675.428 kb on + strand, within Sama_0548 at 675.429 kb on - strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.435 kb on + strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.436 kb on - strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.439 kb on + strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.440 kb on - strand, within Sama_0548 at 675.508 kb on + strand, within Sama_0548 at 675.508 kb on + strand, within Sama_0548 at 675.509 kb on - strand, within Sama_0548 at 675.543 kb on + strand at 675.543 kb on + strand at 675.543 kb on + strand at 675.543 kb on + strand at 675.543 kb on + strand at 675.544 kb on - strand at 675.544 kb on - strand at 675.547 kb on + strand at 675.547 kb on + strand at 675.547 kb on + strand at 675.548 kb on - strand at 675.555 kb on + strand at 675.556 kb on - strand at 675.614 kb on + strand at 675.614 kb on + strand at 675.615 kb on - strand at 675.665 kb on + strand at 675.665 kb on + strand at 675.688 kb on - strand at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.721 kb on + strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.722 kb on - strand, within Sama_0549 at 675.759 kb on - strand, within Sama_0549 at 675.759 kb on - strand, within Sama_0549 at 675.770 kb on + strand, within Sama_0549 at 675.771 kb on - strand, within Sama_0549 at 675.776 kb on + strand, within Sama_0549 at 675.784 kb on + strand, within Sama_0549 at 675.785 kb on - strand, within Sama_0549 at 675.852 kb on + strand at 675.852 kb on + strand at 675.853 kb on - strand at 675.853 kb on - strand at 675.853 kb on - strand at 675.890 kb on + strand at 675.890 kb on + strand at 675.891 kb on - strand at 675.907 kb on + strand at 675.908 kb on - strand at 675.914 kb on - strand at 675.914 kb on - strand at 675.979 kb on + strand at 675.979 kb on + strand at 675.979 kb on + strand at 675.980 kb on - strand at 676.115 kb on + strand at 676.115 kb on + strand at 676.115 kb on + strand at 676.115 kb on + strand at 676.115 kb on + strand at 676.116 kb on - strand at 676.116 kb on - strand at 676.116 kb on - strand at 676.116 kb on - strand at 676.116 kb on - strand at 676.179 kb on + strand at 676.179 kb on + strand at 676.179 kb on + strand at 676.179 kb on + strand at 676.198 kb on - strand at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.293 kb on + strand, within Sama_0550 at 676.294 kb on - strand, within Sama_0550 at 676.294 kb on - strand, within Sama_0550 at 676.294 kb on - strand, within Sama_0550 at 676.294 kb on - strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.297 kb on + strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.298 kb on - strand, within Sama_0550 at 676.425 kb on + strand, within Sama_0550 at 676.425 kb on + strand, within Sama_0550 at 676.425 kb on + strand, within Sama_0550 at 676.425 kb on + strand, within Sama_0550 at 676.426 kb on - strand, within Sama_0550 at 676.426 kb on - strand, within Sama_0550 at 676.455 kb on + strand, within Sama_0550 at 676.507 kb on - strand, within Sama_0550 at 676.507 kb on - strand, within Sama_0550 at 676.610 kb on - strand, within Sama_0550 at 676.724 kb on + strand, within Sama_0550 at 676.724 kb on + strand, within Sama_0550 at 676.724 kb on + strand, within Sama_0550 at 676.734 kb on + strand, within Sama_0550 at 676.734 kb on + strand, within Sama_0550 at 676.734 kb on + strand, within Sama_0550 at 676.735 kb on - strand, within Sama_0550 at 676.735 kb on - strand, within Sama_0550 at 676.735 kb on - strand, within Sama_0550 at 676.735 kb on - strand, within Sama_0550 at 676.743 kb on + strand, within Sama_0550 at 676.743 kb on + strand, within Sama_0550 at 676.744 kb on - strand, within Sama_0550 at 676.744 kb on - strand, within Sama_0550 at 676.744 kb on - strand, within Sama_0550 at 676.744 kb on - strand, within Sama_0550
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 674,718 + +0.9 674,806 + -0.1 674,806 + -0.2 674,807 - -1.7 674,810 + +0.8 674,810 + -1.8 674,811 - -1.9 674,831 + -1.4 674,831 + -2.6 674,831 + +1.4 674,832 - +0.7 674,835 + +0.6 674,835 + +0.6 674,835 + +0.2 674,835 + -2.5 674,835 + -0.7 674,835 + +0.2 674,835 + +0.2 674,835 + +1.4 674,835 + -0.1 674,835 + +4.0 674,835 + -1.7 674,835 + -2.1 674,835 + -0.9 674,835 + -1.2 674,835 + -1.1 674,835 + +0.5 674,835 + -0.8 674,835 + -0.3 674,835 + -0.2 674,835 + +0.4 674,835 + -2.1 674,835 + -1.3 674,835 + +0.6 674,835 + -1.9 674,835 + -1.0 674,835 + -2.0 674,835 + +1.8 674,835 + +1.7 674,835 + -0.7 674,835 + +0.5 674,835 + -1.0 674,835 + +1.9 674,836 - +1.8 674,836 - +1.4 674,836 - +0.5 674,836 - -1.1 674,836 - +1.8 674,836 - -1.0 674,836 - -0.0 674,836 - +1.6 674,836 - +0.1 674,836 - -0.5 674,836 - -0.8 674,836 - -0.1 674,836 - -1.8 674,836 - -2.7 674,836 - -1.1 674,836 - +2.0 674,836 - +1.3 674,836 - +1.0 674,836 - +2.0 674,836 - +1.6 674,836 - +0.9 674,836 - -1.0 674,836 - +1.2 674,836 - +1.3 674,836 - +1.5 674,836 - -0.5 674,836 - -0.5 674,836 - +2.2 674,836 - +2.1 674,836 - -1.5 674,837 + -0.8 674,837 + +1.3 674,837 + +0.4 674,837 + -2.6 674,837 + +1.1 674,837 + +0.2 674,837 + -0.5 674,837 + -0.1 674,838 - -1.0 674,838 - +1.6 674,838 - -1.5 674,838 - -0.7 674,838 - -1.5 674,838 - +1.9 674,838 - +0.3 674,838 - +0.8 674,843 + +1.5 674,843 + -2.7 674,843 + +1.8 674,843 + -0.0 674,844 - +0.2 674,844 - +2.2 674,844 - +1.6 674,853 - -0.5 674,856 - +1.0 674,897 + -0.3 674,897 + -0.5 674,897 + +1.3 674,898 - -1.3 674,905 - -1.2 674,917 + +0.4 674,917 + +0.0 674,917 + +0.2 674,925 + -0.1 674,925 + -0.0 674,926 - -3.9 675,026 - -2.5 675,048 + Sama_0548 0.13 +0.0 675,135 + Sama_0548 0.27 -1.0 675,135 + Sama_0548 0.27 -1.5 675,135 + Sama_0548 0.27 -1.7 675,135 + Sama_0548 0.27 -0.7 675,135 + Sama_0548 0.27 +1.9 675,135 + Sama_0548 0.27 -0.4 675,135 + Sama_0548 0.27 -1.1 675,135 + Sama_0548 0.27 -1.2 675,135 + Sama_0548 0.27 -0.5 675,135 + Sama_0548 0.27 -1.4 675,135 + Sama_0548 0.27 -0.8 675,136 - Sama_0548 0.27 -0.1 675,136 - Sama_0548 0.27 -0.8 675,141 + Sama_0548 0.28 -2.0 675,142 - Sama_0548 0.28 -1.0 675,206 - Sama_0548 0.38 +0.5 675,212 + Sama_0548 0.39 -0.3 675,212 + Sama_0548 0.39 +1.6 675,212 + Sama_0548 0.39 -0.5 675,212 + Sama_0548 0.39 -2.5 675,250 + Sama_0548 0.45 -1.5 675,251 - Sama_0548 0.45 +2.5 675,317 - Sama_0548 0.56 -0.5 675,334 - Sama_0548 0.59 -1.9 675,370 + Sama_0548 0.65 -2.5 675,371 - Sama_0548 0.65 -0.2 675,371 - Sama_0548 0.65 -3.5 675,401 + Sama_0548 0.70 +0.8 675,401 + Sama_0548 0.70 -1.5 675,401 + Sama_0548 0.70 -1.0 675,401 + Sama_0548 0.70 -2.5 675,428 + Sama_0548 0.74 -0.7 675,429 - Sama_0548 0.74 +0.5 675,435 + Sama_0548 0.75 -1.8 675,435 + Sama_0548 0.75 -0.7 675,435 + Sama_0548 0.75 -1.2 675,435 + Sama_0548 0.75 +0.1 675,435 + Sama_0548 0.75 -1.0 675,435 + Sama_0548 0.75 +0.2 675,435 + Sama_0548 0.75 -0.5 675,435 + Sama_0548 0.75 +0.0 675,435 + Sama_0548 0.75 -1.7 675,436 - Sama_0548 0.75 -1.4 675,436 - Sama_0548 0.75 -2.4 675,436 - Sama_0548 0.75 -1.0 675,436 - Sama_0548 0.75 -1.4 675,436 - Sama_0548 0.75 -1.8 675,436 - Sama_0548 0.75 +2.7 675,436 - Sama_0548 0.75 -0.8 675,436 - Sama_0548 0.75 -0.6 675,436 - Sama_0548 0.75 -2.2 675,439 + Sama_0548 0.76 +0.2 675,439 + Sama_0548 0.76 -0.7 675,439 + Sama_0548 0.76 -1.3 675,439 + Sama_0548 0.76 +1.8 675,439 + Sama_0548 0.76 +1.5 675,439 + Sama_0548 0.76 -0.5 675,439 + Sama_0548 0.76 -1.2 675,439 + Sama_0548 0.76 +0.1 675,439 + Sama_0548 0.76 -1.8 675,440 - Sama_0548 0.76 -1.0 675,440 - Sama_0548 0.76 -1.6 675,440 - Sama_0548 0.76 +1.8 675,440 - Sama_0548 0.76 -1.0 675,440 - Sama_0548 0.76 -1.1 675,440 - Sama_0548 0.76 +1.3 675,508 + Sama_0548 0.87 -0.5 675,508 + Sama_0548 0.87 -1.0 675,509 - Sama_0548 0.87 -0.8 675,543 + -0.8 675,543 + -0.6 675,543 + +0.2 675,543 + -0.7 675,543 + -0.4 675,544 - -2.6 675,544 - +0.0 675,547 + +0.2 675,547 + +0.2 675,547 + +0.6 675,548 - -2.0 675,555 + -1.2 675,556 - -1.7 675,614 + -0.5 675,614 + -0.5 675,615 - -1.4 675,665 + -1.2 675,665 + +1.9 675,688 - +0.9 675,721 + Sama_0549 0.27 -1.5 675,721 + Sama_0549 0.27 +0.9 675,721 + Sama_0549 0.27 +1.0 675,721 + Sama_0549 0.27 +0.1 675,721 + Sama_0549 0.27 +0.1 675,721 + Sama_0549 0.27 -3.3 675,721 + Sama_0549 0.27 -0.5 675,722 - Sama_0549 0.28 -1.0 675,722 - Sama_0549 0.28 -0.2 675,722 - Sama_0549 0.28 -0.8 675,722 - Sama_0549 0.28 +1.3 675,722 - Sama_0549 0.28 +1.1 675,722 - Sama_0549 0.28 -2.0 675,722 - Sama_0549 0.28 +1.2 675,722 - Sama_0549 0.28 -0.7 675,759 - Sama_0549 0.57 -2.0 675,759 - Sama_0549 0.57 +2.0 675,770 + Sama_0549 0.65 +3.1 675,771 - Sama_0549 0.66 +1.4 675,776 + Sama_0549 0.70 +0.4 675,784 + Sama_0549 0.76 +0.2 675,785 - Sama_0549 0.77 -1.8 675,852 + +0.3 675,852 + -0.7 675,853 - +0.5 675,853 - +0.8 675,853 - +0.6 675,890 + -2.1 675,890 + +0.0 675,891 - -0.1 675,907 + -1.2 675,908 - +0.6 675,914 - -0.5 675,914 - +2.5 675,979 + +1.0 675,979 + -1.7 675,979 + -1.3 675,980 - -0.3 676,115 + +1.2 676,115 + +0.6 676,115 + -1.1 676,115 + -1.7 676,115 + +0.2 676,116 - -1.2 676,116 - +0.3 676,116 - -1.3 676,116 - -2.1 676,116 - -2.9 676,179 + -1.3 676,179 + +1.6 676,179 + -0.2 676,179 + +1.2 676,198 - +0.5 676,293 + Sama_0550 0.15 -0.8 676,293 + Sama_0550 0.15 -1.1 676,293 + Sama_0550 0.15 -0.5 676,293 + Sama_0550 0.15 +1.0 676,293 + Sama_0550 0.15 +1.1 676,293 + Sama_0550 0.15 -0.7 676,293 + Sama_0550 0.15 +1.1 676,294 - Sama_0550 0.15 -0.7 676,294 - Sama_0550 0.15 +1.0 676,294 - Sama_0550 0.15 -1.8 676,294 - Sama_0550 0.15 +0.2 676,297 + Sama_0550 0.15 +0.8 676,297 + Sama_0550 0.15 -0.3 676,297 + Sama_0550 0.15 -0.7 676,297 + Sama_0550 0.15 -1.2 676,297 + Sama_0550 0.15 -0.6 676,297 + Sama_0550 0.15 -0.1 676,297 + Sama_0550 0.15 -0.2 676,298 - Sama_0550 0.15 +0.3 676,298 - Sama_0550 0.15 -0.8 676,298 - Sama_0550 0.15 -0.5 676,298 - Sama_0550 0.15 -0.7 676,298 - Sama_0550 0.15 -0.6 676,298 - Sama_0550 0.15 -1.5 676,298 - Sama_0550 0.15 -1.0 676,425 + Sama_0550 0.23 -0.3 676,425 + Sama_0550 0.23 -0.2 676,425 + Sama_0550 0.23 +1.1 676,425 + Sama_0550 0.23 -0.9 676,426 - Sama_0550 0.24 -1.0 676,426 - Sama_0550 0.24 -1.6 676,455 + Sama_0550 0.25 -0.8 676,507 - Sama_0550 0.29 +0.1 676,507 - Sama_0550 0.29 -0.2 676,610 - Sama_0550 0.35 -1.3 676,724 + Sama_0550 0.43 +0.9 676,724 + Sama_0550 0.43 +0.5 676,724 + Sama_0550 0.43 -2.0 676,734 + Sama_0550 0.43 +1.9 676,734 + Sama_0550 0.43 +1.7 676,734 + Sama_0550 0.43 -0.7 676,735 - Sama_0550 0.43 -1.8 676,735 - Sama_0550 0.43 +2.0 676,735 - Sama_0550 0.43 +0.2 676,735 - Sama_0550 0.43 -1.4 676,743 + Sama_0550 0.44 -2.5 676,743 + Sama_0550 0.44 -1.3 676,744 - Sama_0550 0.44 -1.8 676,744 - Sama_0550 0.44 -0.4 676,744 - Sama_0550 0.44 -1.4 676,744 - Sama_0550 0.44 +0.8
Or see this region's nucleotide sequence