Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0514 and Sama_0515 are separated by 257 nucleotides Sama_0515 and Sama_0516 are separated by 35 nucleotides Sama_0516 and Sama_0517 are separated by 126 nucleotides
Sama_0514: Sama_0514 - excinuclease ABC, A subunit (RefSeq), at 631,612 to 634,440
_0514
Sama_0515: Sama_0515 - transporter, putative (RefSeq), at 634,698 to 636,065
_0515
Sama_0516: Sama_0516 - single-strand binding protein (RefSeq), at 636,101 to 636,805
_0516
Sama_0517: Sama_0517 - D-beta-hydroxybutyrate dehydrogenase (RefSeq), at 636,932 to 637,732
_0517
Position (kb) 634
635
636
637 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 633.884 kb on - strand, within Sama_0514 at 633.892 kb on + strand, within Sama_0514 at 633.892 kb on + strand, within Sama_0514 at 633.919 kb on - strand, within Sama_0514 at 633.920 kb on + strand, within Sama_0514 at 633.920 kb on + strand, within Sama_0514 at 633.920 kb on + strand, within Sama_0514 at 633.920 kb on + strand, within Sama_0514 at 633.920 kb on + strand, within Sama_0514 at 633.921 kb on - strand, within Sama_0514 at 633.921 kb on - strand, within Sama_0514 at 633.921 kb on - strand, within Sama_0514 at 633.952 kb on - strand, within Sama_0514 at 633.952 kb on - strand, within Sama_0514 at 634.117 kb on + strand, within Sama_0514 at 634.117 kb on + strand, within Sama_0514 at 634.117 kb on + strand, within Sama_0514 at 634.117 kb on + strand, within Sama_0514 at 634.121 kb on + strand, within Sama_0514 at 634.122 kb on - strand, within Sama_0514 at 634.122 kb on - strand, within Sama_0514 at 634.127 kb on + strand, within Sama_0514 at 634.127 kb on + strand, within Sama_0514 at 634.128 kb on - strand, within Sama_0514 at 634.128 kb on - strand, within Sama_0514 at 634.143 kb on + strand, within Sama_0514 at 634.144 kb on - strand, within Sama_0514 at 634.216 kb on - strand at 634.216 kb on - strand at 634.262 kb on + strand at 634.284 kb on - strand at 634.305 kb on - strand at 634.305 kb on - strand at 634.305 kb on - strand at 634.311 kb on + strand at 634.392 kb on + strand at 634.392 kb on + strand at 634.392 kb on + strand at 634.392 kb on + strand at 634.392 kb on + strand at 634.393 kb on - strand at 634.393 kb on - strand at 634.452 kb on - strand at 634.483 kb on + strand at 634.488 kb on + strand at 634.489 kb on - strand at 634.500 kb on + strand at 634.500 kb on + strand at 634.500 kb on + strand at 634.550 kb on - strand at 634.550 kb on - strand at 634.579 kb on + strand at 634.653 kb on + strand at 634.703 kb on + strand at 634.784 kb on + strand at 634.784 kb on + strand at 634.784 kb on + strand at 634.784 kb on + strand at 634.785 kb on - strand at 634.850 kb on + strand, within Sama_0515 at 634.851 kb on - strand, within Sama_0515 at 634.852 kb on + strand, within Sama_0515 at 634.852 kb on + strand, within Sama_0515 at 634.852 kb on + strand, within Sama_0515 at 634.852 kb on + strand, within Sama_0515 at 634.853 kb on - strand, within Sama_0515 at 634.866 kb on + strand, within Sama_0515 at 634.866 kb on + strand, within Sama_0515 at 634.866 kb on + strand, within Sama_0515 at 634.866 kb on + strand, within Sama_0515 at 634.904 kb on + strand, within Sama_0515 at 634.904 kb on + strand, within Sama_0515 at 634.937 kb on + strand, within Sama_0515 at 634.937 kb on + strand, within Sama_0515 at 635.001 kb on + strand, within Sama_0515 at 635.001 kb on + strand, within Sama_0515 at 635.001 kb on + strand, within Sama_0515 at 635.001 kb on + strand, within Sama_0515 at 635.001 kb on + strand, within Sama_0515 at 635.001 kb on + strand, within Sama_0515 at 635.001 kb on + strand, within Sama_0515 at 635.001 kb on + strand, within Sama_0515 at 635.002 kb on - strand, within Sama_0515 at 635.002 kb on - strand, within Sama_0515 at 635.126 kb on + strand, within Sama_0515 at 635.127 kb on - strand, within Sama_0515 at 635.127 kb on - strand, within Sama_0515 at 635.180 kb on + strand, within Sama_0515 at 635.180 kb on + strand, within Sama_0515 at 635.239 kb on + strand, within Sama_0515 at 635.288 kb on + strand, within Sama_0515 at 635.358 kb on - strand, within Sama_0515 at 635.358 kb on - strand, within Sama_0515 at 635.363 kb on + strand, within Sama_0515 at 635.363 kb on + strand, within Sama_0515 at 635.364 kb on - strand, within Sama_0515 at 635.454 kb on + strand, within Sama_0515 at 635.455 kb on - strand, within Sama_0515 at 635.469 kb on - strand, within Sama_0515 at 635.498 kb on + strand, within Sama_0515 at 635.498 kb on + strand, within Sama_0515 at 635.519 kb on + strand, within Sama_0515 at 635.520 kb on - strand, within Sama_0515 at 635.645 kb on + strand, within Sama_0515 at 635.645 kb on + strand, within Sama_0515 at 635.646 kb on - strand, within Sama_0515 at 635.646 kb on - strand, within Sama_0515 at 635.649 kb on + strand, within Sama_0515 at 635.650 kb on - strand, within Sama_0515 at 635.724 kb on + strand, within Sama_0515 at 635.724 kb on + strand, within Sama_0515 at 635.725 kb on - strand, within Sama_0515 at 635.886 kb on + strand, within Sama_0515 at 635.886 kb on + strand, within Sama_0515 at 635.887 kb on - strand, within Sama_0515 at 635.887 kb on - strand, within Sama_0515 at 635.887 kb on - strand, within Sama_0515 at 635.887 kb on - strand, within Sama_0515 at 635.887 kb on - strand, within Sama_0515 at 635.887 kb on - strand, within Sama_0515 at 635.905 kb on + strand, within Sama_0515 at 635.905 kb on + strand, within Sama_0515 at 635.906 kb on - strand, within Sama_0515 at 635.962 kb on + strand at 635.963 kb on - strand at 636.000 kb on + strand at 636.028 kb on + strand at 636.810 kb on + strand at 636.819 kb on + strand at 636.819 kb on + strand at 636.819 kb on + strand at 636.820 kb on - strand at 636.820 kb on - strand at 636.820 kb on - strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.821 kb on + strand at 636.822 kb on - strand at 636.822 kb on - strand at 636.822 kb on - strand at 636.822 kb on - strand at 636.822 kb on - strand at 636.822 kb on - strand at 637.022 kb on + strand, within Sama_0517 at 637.022 kb on + strand, within Sama_0517 at 637.022 kb on + strand, within Sama_0517
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 633,884 - Sama_0514 0.80 +1.9 633,892 + Sama_0514 0.81 -1.4 633,892 + Sama_0514 0.81 -0.2 633,919 - Sama_0514 0.82 -0.6 633,920 + Sama_0514 0.82 -0.5 633,920 + Sama_0514 0.82 -1.8 633,920 + Sama_0514 0.82 +0.6 633,920 + Sama_0514 0.82 +0.2 633,920 + Sama_0514 0.82 -0.4 633,921 - Sama_0514 0.82 -1.4 633,921 - Sama_0514 0.82 -0.7 633,921 - Sama_0514 0.82 -0.1 633,952 - Sama_0514 0.83 -1.0 633,952 - Sama_0514 0.83 -0.7 634,117 + Sama_0514 0.89 +0.5 634,117 + Sama_0514 0.89 +3.7 634,117 + Sama_0514 0.89 +0.2 634,117 + Sama_0514 0.89 -0.3 634,121 + Sama_0514 0.89 -0.9 634,122 - Sama_0514 0.89 -2.1 634,122 - Sama_0514 0.89 -1.9 634,127 + Sama_0514 0.89 +0.9 634,127 + Sama_0514 0.89 +0.6 634,128 - Sama_0514 0.89 -1.4 634,128 - Sama_0514 0.89 -0.7 634,143 + Sama_0514 0.89 +0.6 634,144 - Sama_0514 0.90 -0.5 634,216 - -1.0 634,216 - +0.8 634,262 + -1.3 634,284 - -2.6 634,305 - +1.5 634,305 - -0.6 634,305 - -2.0 634,311 + -0.7 634,392 + +0.5 634,392 + +0.7 634,392 + -1.5 634,392 + +0.2 634,392 + +1.0 634,393 - +0.2 634,393 - -1.0 634,452 - +0.4 634,483 + -0.5 634,488 + +0.7 634,489 - +2.0 634,500 + +0.6 634,500 + -1.7 634,500 + -2.7 634,550 - -0.7 634,550 - -0.8 634,579 + -2.3 634,653 + -2.0 634,703 + -1.5 634,784 + -0.2 634,784 + -0.2 634,784 + -0.8 634,784 + -1.2 634,785 - -1.7 634,850 + Sama_0515 0.11 -2.2 634,851 - Sama_0515 0.11 -0.8 634,852 + Sama_0515 0.11 -1.0 634,852 + Sama_0515 0.11 -1.0 634,852 + Sama_0515 0.11 -2.8 634,852 + Sama_0515 0.11 -1.0 634,853 - Sama_0515 0.11 -1.5 634,866 + Sama_0515 0.12 -2.6 634,866 + Sama_0515 0.12 -2.8 634,866 + Sama_0515 0.12 -2.2 634,866 + Sama_0515 0.12 -2.0 634,904 + Sama_0515 0.15 -0.7 634,904 + Sama_0515 0.15 +1.5 634,937 + Sama_0515 0.17 -0.5 634,937 + Sama_0515 0.17 +0.2 635,001 + Sama_0515 0.22 -0.3 635,001 + Sama_0515 0.22 -2.0 635,001 + Sama_0515 0.22 -2.5 635,001 + Sama_0515 0.22 -0.8 635,001 + Sama_0515 0.22 -2.0 635,001 + Sama_0515 0.22 -0.5 635,001 + Sama_0515 0.22 -1.3 635,001 + Sama_0515 0.22 -1.2 635,002 - Sama_0515 0.22 -1.3 635,002 - Sama_0515 0.22 +0.8 635,126 + Sama_0515 0.31 +0.8 635,127 - Sama_0515 0.31 -1.2 635,127 - Sama_0515 0.31 -1.9 635,180 + Sama_0515 0.35 +0.8 635,180 + Sama_0515 0.35 -1.9 635,239 + Sama_0515 0.40 -0.5 635,288 + Sama_0515 0.43 -1.4 635,358 - Sama_0515 0.48 -0.2 635,358 - Sama_0515 0.48 -1.2 635,363 + Sama_0515 0.49 -1.9 635,363 + Sama_0515 0.49 +1.8 635,364 - Sama_0515 0.49 -0.0 635,454 + Sama_0515 0.55 -2.5 635,455 - Sama_0515 0.55 -0.5 635,469 - Sama_0515 0.56 +0.8 635,498 + Sama_0515 0.58 -1.9 635,498 + Sama_0515 0.58 -1.5 635,519 + Sama_0515 0.60 -3.5 635,520 - Sama_0515 0.60 -1.5 635,645 + Sama_0515 0.69 -2.1 635,645 + Sama_0515 0.69 +0.8 635,646 - Sama_0515 0.69 -1.5 635,646 - Sama_0515 0.69 -1.2 635,649 + Sama_0515 0.70 +0.2 635,650 - Sama_0515 0.70 -2.0 635,724 + Sama_0515 0.75 -1.2 635,724 + Sama_0515 0.75 -0.2 635,725 - Sama_0515 0.75 -1.4 635,886 + Sama_0515 0.87 -3.1 635,886 + Sama_0515 0.87 -0.2 635,887 - Sama_0515 0.87 -1.7 635,887 - Sama_0515 0.87 -1.4 635,887 - Sama_0515 0.87 +1.4 635,887 - Sama_0515 0.87 -0.1 635,887 - Sama_0515 0.87 -0.3 635,887 - Sama_0515 0.87 -0.2 635,905 + Sama_0515 0.88 -2.6 635,905 + Sama_0515 0.88 +0.0 635,906 - Sama_0515 0.88 -1.2 635,962 + +1.7 635,963 - -2.4 636,000 + -3.7 636,028 + -1.5 636,810 + +2.0 636,819 + -0.5 636,819 + +0.8 636,819 + +0.1 636,820 - -1.8 636,820 - +1.2 636,820 - -0.4 636,821 + -1.3 636,821 + -0.5 636,821 + +1.9 636,821 + -0.4 636,821 + +1.9 636,821 + +0.2 636,821 + +2.4 636,821 + -0.3 636,821 + -2.5 636,821 + -0.1 636,821 + +1.0 636,821 + +0.2 636,821 + +0.8 636,821 + +0.1 636,821 + +1.0 636,821 + +0.5 636,821 + +0.9 636,821 + +0.5 636,822 - -0.2 636,822 - -2.2 636,822 - -0.1 636,822 - +1.1 636,822 - -2.4 636,822 - -2.0 637,022 + Sama_0517 0.11 -0.8 637,022 + Sama_0517 0.11 -0.1 637,022 + Sama_0517 0.11 -0.4
Or see this region's nucleotide sequence