Strain Fitness in Shewanella amazonensis SB2B around Sama_0455

Experiment: Motility assay, center cut sample 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0454 and Sama_0455 are separated by 1 nucleotidesSama_0455 and Sama_0456 overlap by 4 nucleotides Sama_0454: Sama_0454 - MSHA biogenesis protein MshL (RefSeq), at 559,471 to 561,156 _0454 Sama_0455: Sama_0455 - MSHA biogenesis protein MshM (RefSeq), at 561,158 to 562,060 _0455 Sama_0456: Sama_0456 - MSHA biogenesis protein MshN, putative (RefSeq), at 562,057 to 563,256 _0456 Position (kb) 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 560.505 kb on - strand, within Sama_0454at 560.522 kb on + strand, within Sama_0454at 560.522 kb on + strand, within Sama_0454at 560.522 kb on + strand, within Sama_0454at 560.522 kb on + strand, within Sama_0454at 560.523 kb on - strand, within Sama_0454at 560.523 kb on - strand, within Sama_0454at 560.523 kb on - strand, within Sama_0454at 560.523 kb on - strand, within Sama_0454at 560.546 kb on + strand, within Sama_0454at 560.546 kb on + strand, within Sama_0454at 560.547 kb on - strand, within Sama_0454at 560.547 kb on - strand, within Sama_0454at 560.547 kb on - strand, within Sama_0454at 560.559 kb on + strand, within Sama_0454at 560.647 kb on + strand, within Sama_0454at 560.647 kb on + strand, within Sama_0454at 560.647 kb on + strand, within Sama_0454at 560.648 kb on - strand, within Sama_0454at 560.648 kb on - strand, within Sama_0454at 560.648 kb on - strand, within Sama_0454at 560.648 kb on - strand, within Sama_0454at 560.904 kb on + strand, within Sama_0454at 560.978 kb on + strand, within Sama_0454at 560.978 kb on + strand, within Sama_0454at 560.979 kb on - strand, within Sama_0454at 560.979 kb on - strand, within Sama_0454at 560.995 kb on - strandat 561.018 kb on + strandat 561.059 kb on + strandat 561.059 kb on + strandat 561.059 kb on + strandat 561.084 kb on - strandat 561.084 kb on - strandat 561.154 kb on + strandat 561.154 kb on + strandat 561.155 kb on - strandat 561.161 kb on + strandat 561.161 kb on + strandat 561.161 kb on + strandat 561.161 kb on + strandat 561.161 kb on + strandat 561.161 kb on + strandat 561.161 kb on + strandat 561.161 kb on + strandat 561.162 kb on - strandat 561.292 kb on + strand, within Sama_0455at 561.292 kb on + strand, within Sama_0455at 561.292 kb on + strand, within Sama_0455at 561.293 kb on - strand, within Sama_0455at 561.293 kb on - strand, within Sama_0455at 561.322 kb on + strand, within Sama_0455at 561.323 kb on - strand, within Sama_0455at 561.323 kb on - strand, within Sama_0455at 561.380 kb on + strand, within Sama_0455at 561.380 kb on + strand, within Sama_0455at 561.381 kb on - strand, within Sama_0455at 561.381 kb on - strand, within Sama_0455at 561.381 kb on - strand, within Sama_0455at 561.449 kb on + strand, within Sama_0455at 561.450 kb on - strand, within Sama_0455at 561.487 kb on + strand, within Sama_0455at 561.487 kb on + strand, within Sama_0455at 561.487 kb on + strand, within Sama_0455at 561.488 kb on - strand, within Sama_0455at 561.488 kb on - strand, within Sama_0455at 561.488 kb on - strand, within Sama_0455at 561.488 kb on - strand, within Sama_0455at 561.488 kb on - strand, within Sama_0455at 561.488 kb on - strand, within Sama_0455at 561.489 kb on + strand, within Sama_0455at 561.489 kb on + strand, within Sama_0455at 561.489 kb on + strand, within Sama_0455at 561.489 kb on + strand, within Sama_0455at 561.489 kb on + strand, within Sama_0455at 561.489 kb on + strand, within Sama_0455at 561.489 kb on + strand, within Sama_0455at 561.489 kb on + strand, within Sama_0455at 561.490 kb on - strand, within Sama_0455at 561.490 kb on - strand, within Sama_0455at 561.490 kb on - strand, within Sama_0455at 561.490 kb on - strand, within Sama_0455at 561.490 kb on - strand, within Sama_0455at 561.490 kb on - strand, within Sama_0455at 561.490 kb on - strand, within Sama_0455at 561.490 kb on - strand, within Sama_0455at 561.490 kb on - strand, within Sama_0455at 561.490 kb on - strand, within Sama_0455at 561.538 kb on + strand, within Sama_0455at 561.538 kb on + strand, within Sama_0455at 561.539 kb on - strand, within Sama_0455at 561.585 kb on + strand, within Sama_0455at 561.585 kb on + strand, within Sama_0455at 561.586 kb on - strand, within Sama_0455at 561.586 kb on - strand, within Sama_0455at 561.586 kb on - strand, within Sama_0455at 561.595 kb on + strand, within Sama_0455at 561.595 kb on + strand, within Sama_0455at 561.595 kb on + strand, within Sama_0455at 561.596 kb on - strand, within Sama_0455at 561.685 kb on + strand, within Sama_0455at 561.685 kb on + strand, within Sama_0455at 561.685 kb on + strand, within Sama_0455at 561.717 kb on - strand, within Sama_0455at 561.747 kb on + strand, within Sama_0455at 561.747 kb on + strand, within Sama_0455at 561.747 kb on + strand, within Sama_0455at 561.747 kb on + strand, within Sama_0455at 561.748 kb on - strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.755 kb on + strand, within Sama_0455at 561.756 kb on - strand, within Sama_0455at 561.756 kb on - strand, within Sama_0455at 561.756 kb on - strand, within Sama_0455at 561.756 kb on - strand, within Sama_0455at 561.756 kb on - strand, within Sama_0455at 561.756 kb on - strand, within Sama_0455at 561.756 kb on - strand, within Sama_0455at 561.756 kb on - strand, within Sama_0455at 561.756 kb on - strand, within Sama_0455at 561.771 kb on + strand, within Sama_0455at 561.771 kb on + strand, within Sama_0455at 561.772 kb on - strand, within Sama_0455at 561.787 kb on - strand, within Sama_0455at 561.849 kb on + strand, within Sama_0455at 561.859 kb on + strand, within Sama_0455at 561.859 kb on + strand, within Sama_0455at 561.859 kb on + strand, within Sama_0455at 561.860 kb on - strand, within Sama_0455at 561.865 kb on + strand, within Sama_0455at 561.865 kb on + strand, within Sama_0455at 561.885 kb on + strand, within Sama_0455at 562.057 kb on - strandat 562.057 kb on - strandat 562.057 kb on - strandat 562.092 kb on + strandat 562.182 kb on + strand, within Sama_0456at 562.182 kb on + strand, within Sama_0456at 562.257 kb on + strand, within Sama_0456at 562.257 kb on + strand, within Sama_0456at 562.257 kb on + strand, within Sama_0456at 562.258 kb on - strand, within Sama_0456at 562.258 kb on - strand, within Sama_0456at 562.258 kb on - strand, within Sama_0456at 562.262 kb on + strand, within Sama_0456at 562.262 kb on + strand, within Sama_0456at 562.262 kb on + strand, within Sama_0456at 562.262 kb on + strand, within Sama_0456at 562.263 kb on - strand, within Sama_0456at 562.263 kb on - strand, within Sama_0456at 562.263 kb on - strand, within Sama_0456at 562.263 kb on - strand, within Sama_0456at 562.263 kb on - strand, within Sama_0456at 562.265 kb on + strand, within Sama_0456at 562.265 kb on + strand, within Sama_0456at 562.266 kb on - strand, within Sama_0456at 562.266 kb on - strand, within Sama_0456at 562.266 kb on - strand, within Sama_0456at 562.266 kb on - strand, within Sama_0456at 562.273 kb on - strand, within Sama_0456at 562.273 kb on - strand, within Sama_0456at 562.299 kb on - strand, within Sama_0456at 562.323 kb on - strand, within Sama_0456at 562.431 kb on + strand, within Sama_0456at 562.432 kb on - strand, within Sama_0456at 562.475 kb on + strand, within Sama_0456at 562.493 kb on + strand, within Sama_0456at 562.493 kb on + strand, within Sama_0456at 562.559 kb on + strand, within Sama_0456at 562.559 kb on + strand, within Sama_0456at 562.560 kb on - strand, within Sama_0456at 562.578 kb on + strand, within Sama_0456at 562.632 kb on + strand, within Sama_0456at 562.632 kb on + strand, within Sama_0456at 562.632 kb on + strand, within Sama_0456at 562.633 kb on - strand, within Sama_0456at 562.633 kb on - strand, within Sama_0456at 562.706 kb on + strand, within Sama_0456at 562.706 kb on + strand, within Sama_0456at 562.707 kb on - strand, within Sama_0456at 562.707 kb on - strand, within Sama_0456at 562.707 kb on - strand, within Sama_0456at 562.707 kb on - strand, within Sama_0456at 562.723 kb on - strand, within Sama_0456at 562.759 kb on + strand, within Sama_0456at 562.760 kb on - strand, within Sama_0456at 562.777 kb on + strand, within Sama_0456at 562.777 kb on + strand, within Sama_0456at 562.778 kb on - strand, within Sama_0456at 562.778 kb on - strand, within Sama_0456at 562.778 kb on - strand, within Sama_0456at 562.825 kb on + strand, within Sama_0456at 562.825 kb on + strand, within Sama_0456at 562.826 kb on - strand, within Sama_0456at 562.826 kb on - strand, within Sama_0456at 562.826 kb on - strand, within Sama_0456at 562.826 kb on - strand, within Sama_0456at 562.826 kb on - strand, within Sama_0456at 562.908 kb on - strand, within Sama_0456at 562.908 kb on - strand, within Sama_0456at 562.942 kb on - strand, within Sama_0456at 562.942 kb on - strand, within Sama_0456at 563.001 kb on + strand, within Sama_0456at 563.001 kb on + strand, within Sama_0456at 563.002 kb on - strand, within Sama_0456at 563.009 kb on + strand, within Sama_0456

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2
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560,505 - Sama_0454 0.61 +3.1
560,522 + Sama_0454 0.62 +1.7
560,522 + Sama_0454 0.62 -1.2
560,522 + Sama_0454 0.62 +1.4
560,522 + Sama_0454 0.62 +0.6
560,523 - Sama_0454 0.62 -0.1
560,523 - Sama_0454 0.62 +0.7
560,523 - Sama_0454 0.62 -1.5
560,523 - Sama_0454 0.62 -2.7
560,546 + Sama_0454 0.64 +0.4
560,546 + Sama_0454 0.64 +0.1
560,547 - Sama_0454 0.64 -1.5
560,547 - Sama_0454 0.64 +0.1
560,547 - Sama_0454 0.64 -2.1
560,559 + Sama_0454 0.65 +0.2
560,647 + Sama_0454 0.70 +0.8
560,647 + Sama_0454 0.70 +1.4
560,647 + Sama_0454 0.70 +0.9
560,648 - Sama_0454 0.70 +2.1
560,648 - Sama_0454 0.70 +0.4
560,648 - Sama_0454 0.70 +1.1
560,648 - Sama_0454 0.70 +1.1
560,904 + Sama_0454 0.85 +1.5
560,978 + Sama_0454 0.89 -0.9
560,978 + Sama_0454 0.89 -0.1
560,979 - Sama_0454 0.89 +3.0
560,979 - Sama_0454 0.89 +2.2
560,995 - +1.1
561,018 + +0.2
561,059 + -0.1
561,059 + +0.0
561,059 + +2.1
561,084 - +0.4
561,084 - -2.3
561,154 + -0.2
561,154 + -1.6
561,155 - -0.8
561,161 + +0.4
561,161 + +2.2
561,161 + +0.1
561,161 + -0.5
561,161 + -2.1
561,161 + +0.8
561,161 + -1.1
561,161 + -0.5
561,162 - -0.5
561,292 + Sama_0455 0.15 -1.0
561,292 + Sama_0455 0.15 -0.2
561,292 + Sama_0455 0.15 -0.6
561,293 - Sama_0455 0.15 +0.2
561,293 - Sama_0455 0.15 +2.1
561,322 + Sama_0455 0.18 -0.8
561,323 - Sama_0455 0.18 -0.4
561,323 - Sama_0455 0.18 +0.7
561,380 + Sama_0455 0.25 -0.1
561,380 + Sama_0455 0.25 -1.4
561,381 - Sama_0455 0.25 -2.5
561,381 - Sama_0455 0.25 -0.3
561,381 - Sama_0455 0.25 +0.7
561,449 + Sama_0455 0.32 -0.4
561,450 - Sama_0455 0.32 -3.1
561,487 + Sama_0455 0.36 +1.2
561,487 + Sama_0455 0.36 +2.4
561,487 + Sama_0455 0.36 -1.4
561,488 - Sama_0455 0.37 +1.8
561,488 - Sama_0455 0.37 -1.2
561,488 - Sama_0455 0.37 +1.3
561,488 - Sama_0455 0.37 +1.4
561,488 - Sama_0455 0.37 +0.3
561,488 - Sama_0455 0.37 +0.4
561,489 + Sama_0455 0.37 -1.1
561,489 + Sama_0455 0.37 -1.9
561,489 + Sama_0455 0.37 +3.0
561,489 + Sama_0455 0.37 -0.9
561,489 + Sama_0455 0.37 -1.5
561,489 + Sama_0455 0.37 -0.2
561,489 + Sama_0455 0.37 -1.0
561,489 + Sama_0455 0.37 -0.1
561,490 - Sama_0455 0.37 -2.4
561,490 - Sama_0455 0.37 -1.9
561,490 - Sama_0455 0.37 -1.4
561,490 - Sama_0455 0.37 -1.9
561,490 - Sama_0455 0.37 +0.9
561,490 - Sama_0455 0.37 +0.7
561,490 - Sama_0455 0.37 +0.2
561,490 - Sama_0455 0.37 +0.1
561,490 - Sama_0455 0.37 +0.5
561,490 - Sama_0455 0.37 -0.1
561,538 + Sama_0455 0.42 -1.2
561,538 + Sama_0455 0.42 +0.8
561,539 - Sama_0455 0.42 +0.3
561,585 + Sama_0455 0.47 +0.2
561,585 + Sama_0455 0.47 -0.9
561,586 - Sama_0455 0.47 -0.3
561,586 - Sama_0455 0.47 -0.6
561,586 - Sama_0455 0.47 -0.2
561,595 + Sama_0455 0.48 -0.5
561,595 + Sama_0455 0.48 -0.8
561,595 + Sama_0455 0.48 -1.3
561,596 - Sama_0455 0.49 +0.2
561,685 + Sama_0455 0.58 -0.2
561,685 + Sama_0455 0.58 -1.4
561,685 + Sama_0455 0.58 -0.9
561,717 - Sama_0455 0.62 +0.6
561,747 + Sama_0455 0.65 -0.5
561,747 + Sama_0455 0.65 -0.2
561,747 + Sama_0455 0.65 +1.4
561,747 + Sama_0455 0.65 -0.9
561,748 - Sama_0455 0.65 +2.6
561,755 + Sama_0455 0.66 +0.0
561,755 + Sama_0455 0.66 +1.0
561,755 + Sama_0455 0.66 -1.2
561,755 + Sama_0455 0.66 +2.2
561,755 + Sama_0455 0.66 -1.4
561,755 + Sama_0455 0.66 -0.5
561,755 + Sama_0455 0.66 +0.5
561,755 + Sama_0455 0.66 -0.3
561,755 + Sama_0455 0.66 -1.6
561,755 + Sama_0455 0.66 -0.2
561,755 + Sama_0455 0.66 -1.6
561,755 + Sama_0455 0.66 +0.4
561,756 - Sama_0455 0.66 -0.3
561,756 - Sama_0455 0.66 +2.0
561,756 - Sama_0455 0.66 +0.6
561,756 - Sama_0455 0.66 -0.5
561,756 - Sama_0455 0.66 -1.9
561,756 - Sama_0455 0.66 +1.8
561,756 - Sama_0455 0.66 -0.0
561,756 - Sama_0455 0.66 -0.3
561,756 - Sama_0455 0.66 +1.6
561,771 + Sama_0455 0.68 +0.4
561,771 + Sama_0455 0.68 -0.9
561,772 - Sama_0455 0.68 +1.4
561,787 - Sama_0455 0.70 -0.5
561,849 + Sama_0455 0.77 +0.1
561,859 + Sama_0455 0.78 -0.2
561,859 + Sama_0455 0.78 -2.9
561,859 + Sama_0455 0.78 -0.5
561,860 - Sama_0455 0.78 +1.0
561,865 + Sama_0455 0.78 +0.5
561,865 + Sama_0455 0.78 +1.5
561,885 + Sama_0455 0.81 +1.6
562,057 - -0.1
562,057 - +0.7
562,057 - -1.8
562,092 + -0.5
562,182 + Sama_0456 0.10 +0.8
562,182 + Sama_0456 0.10 -0.3
562,257 + Sama_0456 0.17 -2.5
562,257 + Sama_0456 0.17 -3.1
562,257 + Sama_0456 0.17 +1.6
562,258 - Sama_0456 0.17 +1.1
562,258 - Sama_0456 0.17 -0.8
562,258 - Sama_0456 0.17 +1.8
562,262 + Sama_0456 0.17 -1.0
562,262 + Sama_0456 0.17 -0.5
562,262 + Sama_0456 0.17 +2.6
562,262 + Sama_0456 0.17 +1.2
562,263 - Sama_0456 0.17 +1.5
562,263 - Sama_0456 0.17 +0.8
562,263 - Sama_0456 0.17 +0.2
562,263 - Sama_0456 0.17 +0.1
562,263 - Sama_0456 0.17 -2.4
562,265 + Sama_0456 0.17 +3.5
562,265 + Sama_0456 0.17 +0.2
562,266 - Sama_0456 0.17 +1.3
562,266 - Sama_0456 0.17 -0.2
562,266 - Sama_0456 0.17 -0.2
562,266 - Sama_0456 0.17 +0.2
562,273 - Sama_0456 0.18 -0.5
562,273 - Sama_0456 0.18 +3.2
562,299 - Sama_0456 0.20 -2.2
562,323 - Sama_0456 0.22 +0.1
562,431 + Sama_0456 0.31 -0.6
562,432 - Sama_0456 0.31 -0.2
562,475 + Sama_0456 0.35 +0.8
562,493 + Sama_0456 0.36 -0.4
562,493 + Sama_0456 0.36 -1.4
562,559 + Sama_0456 0.42 -1.5
562,559 + Sama_0456 0.42 -0.8
562,560 - Sama_0456 0.42 -2.4
562,578 + Sama_0456 0.43 -0.0
562,632 + Sama_0456 0.48 -1.0
562,632 + Sama_0456 0.48 -0.9
562,632 + Sama_0456 0.48 +1.8
562,633 - Sama_0456 0.48 +0.2
562,633 - Sama_0456 0.48 -0.9
562,706 + Sama_0456 0.54 +0.8
562,706 + Sama_0456 0.54 +0.0
562,707 - Sama_0456 0.54 +1.4
562,707 - Sama_0456 0.54 +1.1
562,707 - Sama_0456 0.54 -0.3
562,707 - Sama_0456 0.54 +0.5
562,723 - Sama_0456 0.56 -2.6
562,759 + Sama_0456 0.58 -0.0
562,760 - Sama_0456 0.59 -1.4
562,777 + Sama_0456 0.60 -2.4
562,777 + Sama_0456 0.60 -0.3
562,778 - Sama_0456 0.60 +0.0
562,778 - Sama_0456 0.60 -0.3
562,778 - Sama_0456 0.60 -0.8
562,825 + Sama_0456 0.64 -0.8
562,825 + Sama_0456 0.64 -0.5
562,826 - Sama_0456 0.64 -1.1
562,826 - Sama_0456 0.64 +0.8
562,826 - Sama_0456 0.64 +0.9
562,826 - Sama_0456 0.64 -2.1
562,826 - Sama_0456 0.64 -3.0
562,908 - Sama_0456 0.71 +2.2
562,908 - Sama_0456 0.71 -1.7
562,942 - Sama_0456 0.74 +2.0
562,942 - Sama_0456 0.74 +3.8
563,001 + Sama_0456 0.79 +0.0
563,001 + Sama_0456 0.79 -1.5
563,002 - Sama_0456 0.79 +1.7
563,009 + Sama_0456 0.79 -2.0

Or see this region's nucleotide sequence