Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0450 and Sama_0451 overlap by 4 nucleotides Sama_0451 and Sama_0452 overlap by 4 nucleotides Sama_0452 and Sama_0453 overlap by 17 nucleotides Sama_0453 and Sama_0454 are separated by 5 nucleotides
Sama_0450: Sama_0450 - biogenesis protein MshI (RefSeq), at 557,067 to 557,936
_0450
Sama_0451: Sama_0451 - hypothetical protein (RefSeq), at 557,933 to 558,535
_0451
Sama_0452: Sama_0452 - MSHA biogenesis protein MshJ (RefSeq), at 558,532 to 559,185
_0452
Sama_0453: Sama_0453 - MSHA biogenesis protein MshK (RefSeq), at 559,169 to 559,465
_0453
Sama_0454: Sama_0454 - MSHA biogenesis protein MshL (RefSeq), at 559,471 to 561,156
_0454
Position (kb) 557
558
559 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 556.947 kb on + strand at 556.955 kb on - strand at 556.957 kb on + strand at 556.957 kb on + strand at 556.957 kb on + strand at 556.957 kb on + strand at 556.958 kb on - strand at 556.968 kb on + strand at 556.968 kb on + strand at 556.968 kb on + strand at 556.968 kb on + strand at 556.968 kb on + strand at 556.969 kb on - strand at 556.969 kb on - strand at 556.972 kb on + strand at 556.981 kb on + strand at 556.985 kb on + strand at 556.989 kb on + strand at 556.989 kb on + strand at 556.989 kb on + strand at 556.989 kb on + strand at 556.990 kb on - strand at 556.990 kb on - strand at 556.990 kb on - strand at 556.990 kb on - strand at 556.993 kb on - strand at 557.038 kb on + strand at 557.039 kb on - strand at 557.039 kb on - strand at 557.055 kb on - strand at 557.130 kb on + strand at 557.130 kb on + strand at 557.130 kb on + strand at 557.130 kb on + strand at 557.130 kb on + strand at 557.131 kb on - strand at 557.131 kb on - strand at 557.236 kb on + strand, within Sama_0450 at 557.236 kb on + strand, within Sama_0450 at 557.237 kb on - strand, within Sama_0450 at 557.272 kb on + strand, within Sama_0450 at 557.272 kb on + strand, within Sama_0450 at 557.273 kb on - strand, within Sama_0450 at 557.273 kb on - strand, within Sama_0450 at 557.290 kb on - strand, within Sama_0450 at 557.360 kb on + strand, within Sama_0450 at 557.360 kb on + strand, within Sama_0450 at 557.360 kb on + strand, within Sama_0450 at 557.360 kb on + strand, within Sama_0450 at 557.361 kb on - strand, within Sama_0450 at 557.361 kb on - strand, within Sama_0450 at 557.361 kb on - strand, within Sama_0450 at 557.403 kb on + strand, within Sama_0450 at 557.403 kb on + strand, within Sama_0450 at 557.421 kb on - strand, within Sama_0450 at 557.437 kb on + strand, within Sama_0450 at 557.437 kb on + strand, within Sama_0450 at 557.509 kb on + strand, within Sama_0450 at 557.509 kb on + strand, within Sama_0450 at 557.510 kb on - strand, within Sama_0450 at 557.523 kb on - strand, within Sama_0450 at 557.523 kb on - strand, within Sama_0450 at 557.581 kb on + strand, within Sama_0450 at 557.582 kb on - strand, within Sama_0450 at 557.582 kb on - strand, within Sama_0450 at 557.605 kb on + strand, within Sama_0450 at 557.605 kb on + strand, within Sama_0450 at 557.605 kb on + strand, within Sama_0450 at 557.606 kb on - strand, within Sama_0450 at 557.606 kb on - strand, within Sama_0450 at 557.681 kb on - strand, within Sama_0450 at 557.700 kb on + strand, within Sama_0450 at 557.700 kb on + strand, within Sama_0450 at 557.748 kb on + strand, within Sama_0450 at 557.748 kb on + strand, within Sama_0450 at 557.748 kb on + strand, within Sama_0450 at 557.748 kb on + strand, within Sama_0450 at 557.749 kb on - strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.789 kb on - strand, within Sama_0450 at 557.789 kb on - strand, within Sama_0450 at 557.789 kb on - strand, within Sama_0450 at 557.789 kb on - strand, within Sama_0450 at 557.789 kb on - strand, within Sama_0450 at 557.870 kb on + strand at 557.871 kb on - strand at 557.955 kb on + strand at 557.955 kb on + strand at 557.955 kb on + strand at 557.956 kb on - strand at 557.956 kb on - strand at 558.037 kb on - strand, within Sama_0451 at 558.082 kb on - strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.098 kb on - strand, within Sama_0451 at 558.278 kb on + strand, within Sama_0451 at 558.278 kb on + strand, within Sama_0451 at 558.289 kb on + strand, within Sama_0451 at 558.289 kb on + strand, within Sama_0451 at 558.289 kb on + strand, within Sama_0451 at 558.290 kb on - strand, within Sama_0451 at 558.290 kb on - strand, within Sama_0451 at 558.290 kb on - strand, within Sama_0451 at 558.290 kb on - strand, within Sama_0451 at 558.418 kb on + strand, within Sama_0451 at 558.418 kb on + strand, within Sama_0451 at 558.418 kb on + strand, within Sama_0451 at 558.418 kb on + strand, within Sama_0451 at 558.419 kb on - strand, within Sama_0451 at 558.481 kb on + strand at 558.497 kb on - strand at 558.497 kb on - strand at 558.497 kb on - strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.579 kb on - strand at 558.594 kb on + strand at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.665 kb on - strand, within Sama_0452 at 558.687 kb on - strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.729 kb on - strand, within Sama_0452 at 558.729 kb on - strand, within Sama_0452 at 558.729 kb on - strand, within Sama_0452 at 558.729 kb on - strand, within Sama_0452 at 558.729 kb on - strand, within Sama_0452 at 558.736 kb on + strand, within Sama_0452 at 558.737 kb on - strand, within Sama_0452 at 558.737 kb on - strand, within Sama_0452 at 558.846 kb on + strand, within Sama_0452 at 558.847 kb on - strand, within Sama_0452 at 558.986 kb on - strand, within Sama_0452 at 559.075 kb on + strand, within Sama_0452 at 559.075 kb on + strand, within Sama_0452 at 559.076 kb on - strand, within Sama_0452 at 559.108 kb on + strand, within Sama_0452 at 559.108 kb on + strand, within Sama_0452 at 559.140 kb on + strand at 559.141 kb on - strand at 559.183 kb on + strand at 559.183 kb on + strand at 559.184 kb on - strand at 559.188 kb on + strand at 559.188 kb on + strand at 559.277 kb on - strand, within Sama_0453 at 559.328 kb on + strand, within Sama_0453 at 559.328 kb on + strand, within Sama_0453 at 559.338 kb on + strand, within Sama_0453 at 559.338 kb on + strand, within Sama_0453 at 559.338 kb on + strand, within Sama_0453 at 559.338 kb on + strand, within Sama_0453 at 559.339 kb on - strand, within Sama_0453 at 559.339 kb on - strand, within Sama_0453 at 559.339 kb on - strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.355 kb on - strand, within Sama_0453 at 559.355 kb on - strand, within Sama_0453 at 559.355 kb on - strand, within Sama_0453 at 559.355 kb on - strand, within Sama_0453 at 559.369 kb on + strand, within Sama_0453 at 559.369 kb on + strand, within Sama_0453 at 559.450 kb on + strand at 559.450 kb on + strand at 559.451 kb on - strand at 559.451 kb on - strand at 559.453 kb on + strand at 559.454 kb on - strand at 559.463 kb on + strand at 559.463 kb on + strand at 559.463 kb on + strand at 559.463 kb on + strand at 559.463 kb on + strand at 559.464 kb on - strand at 559.464 kb on - strand at 559.464 kb on - strand at 559.464 kb on - strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.470 kb on + strand at 559.470 kb on + strand at 559.470 kb on + strand at 559.470 kb on + strand at 559.470 kb on + strand at 559.470 kb on + strand at 559.471 kb on - strand at 559.471 kb on - strand at 559.471 kb on - strand at 559.485 kb on + strand at 559.486 kb on - strand at 559.492 kb on + strand at 559.492 kb on + strand at 559.492 kb on + strand at 559.493 kb on - strand at 559.497 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 556,947 + +0.6 556,955 - -0.8 556,957 + -0.8 556,957 + +0.8 556,957 + -2.0 556,957 + +0.0 556,958 - +1.8 556,968 + +2.6 556,968 + +1.2 556,968 + +1.9 556,968 + +0.4 556,968 + -1.5 556,969 - -1.5 556,969 - +0.4 556,972 + +0.9 556,981 + +1.8 556,985 + -0.1 556,989 + -0.2 556,989 + +1.2 556,989 + -0.8 556,989 + +0.2 556,990 - +1.2 556,990 - +4.0 556,990 - -0.8 556,990 - +1.2 556,993 - +0.7 557,038 + -0.3 557,039 - +1.1 557,039 - -1.8 557,055 - +0.8 557,130 + -1.2 557,130 + +2.6 557,130 + +1.9 557,130 + -0.2 557,130 + -1.8 557,131 - +2.5 557,131 - +1.4 557,236 + Sama_0450 0.19 +1.3 557,236 + Sama_0450 0.19 -1.5 557,237 - Sama_0450 0.20 -1.4 557,272 + Sama_0450 0.24 -2.2 557,272 + Sama_0450 0.24 +1.1 557,273 - Sama_0450 0.24 -0.1 557,273 - Sama_0450 0.24 +2.2 557,290 - Sama_0450 0.26 +0.4 557,360 + Sama_0450 0.34 -0.1 557,360 + Sama_0450 0.34 -1.1 557,360 + Sama_0450 0.34 +1.3 557,360 + Sama_0450 0.34 -0.8 557,361 - Sama_0450 0.34 +2.2 557,361 - Sama_0450 0.34 +1.4 557,361 - Sama_0450 0.34 -2.4 557,403 + Sama_0450 0.39 +1.8 557,403 + Sama_0450 0.39 +2.2 557,421 - Sama_0450 0.41 +0.2 557,437 + Sama_0450 0.43 +1.1 557,437 + Sama_0450 0.43 -1.9 557,509 + Sama_0450 0.51 -2.9 557,509 + Sama_0450 0.51 -0.3 557,510 - Sama_0450 0.51 -2.4 557,523 - Sama_0450 0.52 -1.3 557,523 - Sama_0450 0.52 +0.9 557,581 + Sama_0450 0.59 +0.1 557,582 - Sama_0450 0.59 -0.1 557,582 - Sama_0450 0.59 -2.0 557,605 + Sama_0450 0.62 -2.0 557,605 + Sama_0450 0.62 +1.8 557,605 + Sama_0450 0.62 -0.8 557,606 - Sama_0450 0.62 -1.8 557,606 - Sama_0450 0.62 +1.9 557,681 - Sama_0450 0.71 -0.5 557,700 + Sama_0450 0.73 -1.6 557,700 + Sama_0450 0.73 +0.4 557,748 + Sama_0450 0.78 +0.7 557,748 + Sama_0450 0.78 +1.8 557,748 + Sama_0450 0.78 -1.2 557,748 + Sama_0450 0.78 -1.2 557,749 - Sama_0450 0.78 +0.8 557,788 + Sama_0450 0.83 +0.8 557,788 + Sama_0450 0.83 +0.4 557,788 + Sama_0450 0.83 -1.0 557,788 + Sama_0450 0.83 -0.7 557,788 + Sama_0450 0.83 +1.5 557,788 + Sama_0450 0.83 +2.1 557,788 + Sama_0450 0.83 +0.7 557,789 - Sama_0450 0.83 -1.0 557,789 - Sama_0450 0.83 +0.8 557,789 - Sama_0450 0.83 +0.6 557,789 - Sama_0450 0.83 +1.0 557,789 - Sama_0450 0.83 +1.7 557,870 + -1.2 557,871 - -1.2 557,955 + +0.4 557,955 + +1.4 557,955 + +1.3 557,956 - +2.3 557,956 - -1.8 558,037 - Sama_0451 0.17 +1.6 558,082 - Sama_0451 0.25 +1.5 558,094 + Sama_0451 0.27 +0.5 558,094 + Sama_0451 0.27 -1.2 558,094 + Sama_0451 0.27 +0.2 558,094 + Sama_0451 0.27 +1.0 558,094 + Sama_0451 0.27 -1.0 558,094 + Sama_0451 0.27 -1.6 558,095 - Sama_0451 0.27 -1.4 558,095 - Sama_0451 0.27 +0.4 558,095 - Sama_0451 0.27 -0.5 558,095 - Sama_0451 0.27 -0.5 558,095 - Sama_0451 0.27 +2.7 558,095 - Sama_0451 0.27 +1.1 558,098 - Sama_0451 0.27 +0.3 558,278 + Sama_0451 0.57 +0.2 558,278 + Sama_0451 0.57 +0.2 558,289 + Sama_0451 0.59 -1.4 558,289 + Sama_0451 0.59 +0.5 558,289 + Sama_0451 0.59 -2.1 558,290 - Sama_0451 0.59 +0.2 558,290 - Sama_0451 0.59 -0.5 558,290 - Sama_0451 0.59 -0.5 558,290 - Sama_0451 0.59 -0.8 558,418 + Sama_0451 0.80 +0.0 558,418 + Sama_0451 0.80 -1.0 558,418 + Sama_0451 0.80 +0.9 558,418 + Sama_0451 0.80 -0.9 558,419 - Sama_0451 0.81 +0.2 558,481 + +0.8 558,497 - +0.2 558,497 - +0.9 558,497 - -1.2 558,578 + -0.2 558,578 + +0.6 558,578 + +0.8 558,578 + +1.8 558,578 + -2.6 558,578 + +1.4 558,578 + +0.0 558,579 - +1.3 558,594 + -0.6 558,624 + Sama_0452 0.14 -1.6 558,624 + Sama_0452 0.14 -0.2 558,624 + Sama_0452 0.14 +1.5 558,624 + Sama_0452 0.14 +1.3 558,624 + Sama_0452 0.14 +0.1 558,624 + Sama_0452 0.14 +1.5 558,624 + Sama_0452 0.14 +1.0 558,624 + Sama_0452 0.14 +0.5 558,624 + Sama_0452 0.14 +0.5 558,624 + Sama_0452 0.14 +0.5 558,624 + Sama_0452 0.14 +0.9 558,625 - Sama_0452 0.14 -0.2 558,625 - Sama_0452 0.14 +1.7 558,625 - Sama_0452 0.14 -2.4 558,625 - Sama_0452 0.14 +0.9 558,625 - Sama_0452 0.14 +0.4 558,625 - Sama_0452 0.14 -0.3 558,625 - Sama_0452 0.14 -1.8 558,625 - Sama_0452 0.14 +0.5 558,665 - Sama_0452 0.20 +2.3 558,687 - Sama_0452 0.24 +2.1 558,728 + Sama_0452 0.30 +2.6 558,728 + Sama_0452 0.30 +2.0 558,728 + Sama_0452 0.30 -0.8 558,728 + Sama_0452 0.30 -0.2 558,728 + Sama_0452 0.30 +1.1 558,728 + Sama_0452 0.30 +0.2 558,728 + Sama_0452 0.30 -2.3 558,729 - Sama_0452 0.30 -1.0 558,729 - Sama_0452 0.30 -2.4 558,729 - Sama_0452 0.30 +0.6 558,729 - Sama_0452 0.30 +2.0 558,729 - Sama_0452 0.30 +0.7 558,736 + Sama_0452 0.31 +0.0 558,737 - Sama_0452 0.31 -1.4 558,737 - Sama_0452 0.31 -1.0 558,846 + Sama_0452 0.48 -2.6 558,847 - Sama_0452 0.48 +0.2 558,986 - Sama_0452 0.69 -1.1 559,075 + Sama_0452 0.83 +1.7 559,075 + Sama_0452 0.83 -0.3 559,076 - Sama_0452 0.83 +0.4 559,108 + Sama_0452 0.88 +1.3 559,108 + Sama_0452 0.88 -2.0 559,140 + +1.6 559,141 - +0.2 559,183 + +2.8 559,183 + +2.0 559,184 - +0.0 559,188 + +0.7 559,188 + +2.5 559,277 - Sama_0453 0.36 +2.1 559,328 + Sama_0453 0.54 +1.8 559,328 + Sama_0453 0.54 +0.0 559,338 + Sama_0453 0.57 -0.7 559,338 + Sama_0453 0.57 +0.6 559,338 + Sama_0453 0.57 +0.0 559,338 + Sama_0453 0.57 +1.4 559,339 - Sama_0453 0.57 -2.0 559,339 - Sama_0453 0.57 -2.2 559,339 - Sama_0453 0.57 +1.7 559,354 + Sama_0453 0.62 +1.8 559,354 + Sama_0453 0.62 -0.6 559,354 + Sama_0453 0.62 +0.4 559,354 + Sama_0453 0.62 +1.0 559,354 + Sama_0453 0.62 -2.2 559,354 + Sama_0453 0.62 -0.6 559,354 + Sama_0453 0.62 -1.1 559,354 + Sama_0453 0.62 +1.1 559,355 - Sama_0453 0.63 -1.0 559,355 - Sama_0453 0.63 +1.2 559,355 - Sama_0453 0.63 +0.3 559,355 - Sama_0453 0.63 +0.2 559,369 + Sama_0453 0.67 -2.4 559,369 + Sama_0453 0.67 -1.6 559,450 + +1.6 559,450 + -2.0 559,451 - -1.5 559,451 - +1.2 559,453 + -0.9 559,454 - +1.5 559,463 + -3.6 559,463 + +0.9 559,463 + -0.1 559,463 + -2.6 559,463 + +0.8 559,464 - -2.8 559,464 - +1.0 559,464 - +0.8 559,464 - +0.7 559,466 + +1.2 559,466 + +2.3 559,466 + -0.6 559,466 + +2.1 559,466 + +1.3 559,466 + +2.1 559,466 + +0.5 559,466 + -2.0 559,466 + +2.1 559,466 + +1.1 559,466 + +1.4 559,466 + -0.1 559,467 - +0.2 559,467 - +1.8 559,467 - +1.1 559,467 - -0.2 559,467 - +2.2 559,467 - +1.4 559,467 - -0.2 559,467 - +0.7 559,467 - -0.1 559,467 - +1.8 559,467 - +2.4 559,467 - +0.6 559,467 - +1.2 559,470 + -0.2 559,470 + +1.0 559,470 + -1.6 559,470 + -1.8 559,470 + -1.2 559,470 + +0.9 559,471 - +0.7 559,471 - -0.2 559,471 - +0.8 559,485 + +0.5 559,486 - +1.4 559,492 + +0.3 559,492 + +1.0 559,492 + +2.1 559,493 - -1.5 559,497 + -0.4 559,523 + +1.5 559,523 + +3.9 559,523 + +0.5 559,523 + +1.9 559,523 + -2.1 559,523 + +1.7 559,523 + +1.8 559,524 - -0.6
Or see this region's nucleotide sequence