Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0446 and rpmE are separated by 147 nucleotides rpmE and Sama_0448 are separated by 502 nucleotides Sama_0448 and Sama_0449 are separated by 149 nucleotides
Sama_0446: Sama_0446 - hypothetical protein (RefSeq), at 552,004 to 552,729
_0446
Sama_0447: rpmE - 50S ribosomal protein L31 (RefSeq), at 552,877 to 553,089
rpmE
Sama_0448: Sama_0448 - malate dehydrogenase (RefSeq), at 553,592 to 554,839
_0448
Sama_0449: Sama_0449 - regulatory protein CsrD (RefSeq), at 554,989 to 556,896
_0449
Position (kb) 553
554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 552.603 kb on + strand, within Sama_0446 at 552.603 kb on + strand, within Sama_0446 at 552.603 kb on + strand, within Sama_0446 at 552.603 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.639 kb on + strand, within Sama_0446 at 552.640 kb on - strand, within Sama_0446 at 552.640 kb on - strand, within Sama_0446 at 552.640 kb on - strand, within Sama_0446 at 552.801 kb on + strand at 553.197 kb on + strand at 553.197 kb on + strand at 553.197 kb on + strand at 553.197 kb on + strand at 553.198 kb on - strand at 553.198 kb on - strand at 553.198 kb on - strand at 553.198 kb on - strand at 553.303 kb on + strand at 553.307 kb on + strand at 553.307 kb on + strand at 553.307 kb on + strand at 553.307 kb on + strand at 553.308 kb on - strand at 553.308 kb on - strand at 553.308 kb on - strand at 553.330 kb on + strand at 553.353 kb on + strand at 553.354 kb on - strand at 553.354 kb on - strand at 553.354 kb on - strand at 553.406 kb on + strand at 553.407 kb on - strand at 553.488 kb on - strand at 553.511 kb on + strand at 553.511 kb on + strand at 553.515 kb on - strand at 553.515 kb on - strand at 553.515 kb on - strand at 553.568 kb on - strand at 553.623 kb on - strand at 553.623 kb on - strand at 553.703 kb on + strand at 553.744 kb on + strand, within Sama_0448 at 553.745 kb on - strand, within Sama_0448 at 553.766 kb on + strand, within Sama_0448 at 553.767 kb on - strand, within Sama_0448 at 553.857 kb on + strand, within Sama_0448 at 553.946 kb on - strand, within Sama_0448 at 554.091 kb on + strand, within Sama_0448 at 554.091 kb on + strand, within Sama_0448 at 554.091 kb on + strand, within Sama_0448 at 554.092 kb on - strand, within Sama_0448 at 554.107 kb on + strand, within Sama_0448 at 554.107 kb on + strand, within Sama_0448 at 554.108 kb on - strand, within Sama_0448 at 554.108 kb on - strand, within Sama_0448 at 554.113 kb on + strand, within Sama_0448 at 554.113 kb on + strand, within Sama_0448 at 554.113 kb on + strand, within Sama_0448 at 554.114 kb on - strand, within Sama_0448 at 554.114 kb on - strand, within Sama_0448 at 554.134 kb on + strand, within Sama_0448 at 554.135 kb on - strand, within Sama_0448 at 554.135 kb on - strand, within Sama_0448 at 554.146 kb on + strand, within Sama_0448 at 554.146 kb on + strand, within Sama_0448 at 554.194 kb on + strand, within Sama_0448 at 554.194 kb on + strand, within Sama_0448 at 554.194 kb on + strand, within Sama_0448 at 554.195 kb on - strand, within Sama_0448 at 554.195 kb on - strand, within Sama_0448 at 554.237 kb on + strand, within Sama_0448 at 554.237 kb on + strand, within Sama_0448 at 554.237 kb on + strand, within Sama_0448 at 554.238 kb on - strand, within Sama_0448 at 554.238 kb on - strand, within Sama_0448 at 554.238 kb on - strand, within Sama_0448 at 554.238 kb on - strand, within Sama_0448 at 554.238 kb on - strand, within Sama_0448 at 554.291 kb on + strand, within Sama_0448 at 554.291 kb on + strand, within Sama_0448 at 554.291 kb on + strand, within Sama_0448 at 554.291 kb on + strand, within Sama_0448 at 554.292 kb on - strand, within Sama_0448 at 554.292 kb on - strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.385 kb on + strand, within Sama_0448 at 554.386 kb on - strand, within Sama_0448 at 554.386 kb on - strand, within Sama_0448 at 554.386 kb on - strand, within Sama_0448 at 554.535 kb on + strand, within Sama_0448 at 554.535 kb on + strand, within Sama_0448 at 554.536 kb on - strand, within Sama_0448 at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.717 kb on + strand at 554.718 kb on - strand at 554.718 kb on - strand at 554.718 kb on - strand at 554.718 kb on - strand at 554.718 kb on - strand at 554.718 kb on - strand at 554.828 kb on + strand at 554.828 kb on + strand at 554.828 kb on + strand at 554.829 kb on - strand at 554.829 kb on - strand at 554.842 kb on + strand at 554.842 kb on + strand at 554.843 kb on - strand at 554.851 kb on + strand at 554.851 kb on + strand at 554.852 kb on - strand at 554.852 kb on - strand at 554.857 kb on + strand at 554.858 kb on - strand at 554.904 kb on + strand at 554.905 kb on - strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.957 kb on + strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.958 kb on - strand at 554.964 kb on + strand at 554.964 kb on + strand at 554.964 kb on + strand at 554.965 kb on - strand at 554.965 kb on - strand at 555.092 kb on + strand at 555.093 kb on - strand at 555.103 kb on + strand at 555.158 kb on - strand at 555.158 kb on - strand at 555.158 kb on - strand at 555.187 kb on - strand, within Sama_0449 at 555.214 kb on + strand, within Sama_0449 at 555.214 kb on + strand, within Sama_0449 at 555.215 kb on - strand, within Sama_0449 at 555.215 kb on - strand, within Sama_0449 at 555.215 kb on - strand, within Sama_0449 at 555.215 kb on - strand, within Sama_0449 at 555.216 kb on + strand, within Sama_0449 at 555.216 kb on + strand, within Sama_0449 at 555.257 kb on + strand, within Sama_0449 at 555.257 kb on + strand, within Sama_0449 at 555.258 kb on - strand, within Sama_0449 at 555.258 kb on - strand, within Sama_0449 at 555.266 kb on - strand, within Sama_0449 at 555.296 kb on + strand, within Sama_0449 at 555.296 kb on + strand, within Sama_0449 at 555.296 kb on + strand, within Sama_0449 at 555.296 kb on + strand, within Sama_0449 at 555.297 kb on - strand, within Sama_0449 at 555.297 kb on - strand, within Sama_0449 at 555.297 kb on - strand, within Sama_0449 at 555.301 kb on + strand, within Sama_0449 at 555.316 kb on + strand, within Sama_0449 at 555.316 kb on + strand, within Sama_0449 at 555.407 kb on + strand, within Sama_0449 at 555.407 kb on + strand, within Sama_0449 at 555.407 kb on + strand, within Sama_0449 at 555.408 kb on - strand, within Sama_0449 at 555.408 kb on - strand, within Sama_0449 at 555.408 kb on - strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.411 kb on + strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.412 kb on - strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.413 kb on + strand, within Sama_0449 at 555.414 kb on - strand, within Sama_0449 at 555.414 kb on - strand, within Sama_0449 at 555.476 kb on + strand, within Sama_0449 at 555.476 kb on + strand, within Sama_0449 at 555.476 kb on + strand, within Sama_0449 at 555.477 kb on - strand, within Sama_0449 at 555.477 kb on - strand, within Sama_0449 at 555.477 kb on - strand, within Sama_0449 at 555.477 kb on - strand, within Sama_0449 at 555.505 kb on - strand, within Sama_0449 at 555.564 kb on - strand, within Sama_0449 at 555.564 kb on - strand, within Sama_0449 at 555.634 kb on - strand, within Sama_0449 at 555.639 kb on + strand, within Sama_0449 at 555.651 kb on + strand, within Sama_0449 at 555.652 kb on - strand, within Sama_0449 at 555.695 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.754 kb on + strand, within Sama_0449 at 555.755 kb on - strand, within Sama_0449 at 555.755 kb on - strand, within Sama_0449 at 555.755 kb on - strand, within Sama_0449 at 555.780 kb on + strand, within Sama_0449 at 555.781 kb on - strand, within Sama_0449 at 555.781 kb on - strand, within Sama_0449
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 552,603 + Sama_0446 0.83 -1.8 552,603 + Sama_0446 0.83 +1.1 552,603 + Sama_0446 0.83 -1.0 552,603 + Sama_0446 0.83 -0.0 552,639 + Sama_0446 0.87 -1.2 552,639 + Sama_0446 0.87 -1.5 552,639 + Sama_0446 0.87 -1.0 552,639 + Sama_0446 0.87 +0.1 552,639 + Sama_0446 0.87 -0.4 552,640 - Sama_0446 0.88 -0.5 552,640 - Sama_0446 0.88 -0.6 552,640 - Sama_0446 0.88 +0.4 552,801 + -1.0 553,197 + -0.4 553,197 + +0.9 553,197 + -0.1 553,197 + -2.6 553,198 - -1.0 553,198 - +0.7 553,198 - +0.4 553,198 - -0.3 553,303 + -2.0 553,307 + -0.1 553,307 + +1.0 553,307 + -0.2 553,307 + -0.9 553,308 - +0.8 553,308 - -1.5 553,308 - +0.8 553,330 + -2.0 553,353 + -1.1 553,354 - -2.1 553,354 - +0.3 553,354 - -1.5 553,406 + +0.0 553,407 - -1.1 553,488 - +0.8 553,511 + -2.0 553,511 + -2.8 553,515 - -0.8 553,515 - -2.6 553,515 - +0.0 553,568 - -0.6 553,623 - -2.1 553,623 - +0.5 553,703 + +0.2 553,744 + Sama_0448 0.12 -1.8 553,745 - Sama_0448 0.12 -1.9 553,766 + Sama_0448 0.14 -1.8 553,767 - Sama_0448 0.14 -1.4 553,857 + Sama_0448 0.21 -1.2 553,946 - Sama_0448 0.28 -2.0 554,091 + Sama_0448 0.40 -1.2 554,091 + Sama_0448 0.40 -1.5 554,091 + Sama_0448 0.40 -0.3 554,092 - Sama_0448 0.40 -2.7 554,107 + Sama_0448 0.41 -0.2 554,107 + Sama_0448 0.41 -0.8 554,108 - Sama_0448 0.41 -0.9 554,108 - Sama_0448 0.41 +0.1 554,113 + Sama_0448 0.42 +0.8 554,113 + Sama_0448 0.42 -1.3 554,113 + Sama_0448 0.42 +1.1 554,114 - Sama_0448 0.42 +0.2 554,114 - Sama_0448 0.42 -1.8 554,134 + Sama_0448 0.43 -0.2 554,135 - Sama_0448 0.44 -0.5 554,135 - Sama_0448 0.44 -2.5 554,146 + Sama_0448 0.44 -1.4 554,146 + Sama_0448 0.44 +0.8 554,194 + Sama_0448 0.48 -2.0 554,194 + Sama_0448 0.48 -1.2 554,194 + Sama_0448 0.48 +2.0 554,195 - Sama_0448 0.48 -1.4 554,195 - Sama_0448 0.48 -0.1 554,237 + Sama_0448 0.52 +0.5 554,237 + Sama_0448 0.52 -1.0 554,237 + Sama_0448 0.52 -0.9 554,238 - Sama_0448 0.52 -1.9 554,238 - Sama_0448 0.52 -2.0 554,238 - Sama_0448 0.52 -0.5 554,238 - Sama_0448 0.52 -0.3 554,238 - Sama_0448 0.52 -3.4 554,291 + Sama_0448 0.56 -2.8 554,291 + Sama_0448 0.56 -1.3 554,291 + Sama_0448 0.56 -1.7 554,291 + Sama_0448 0.56 -2.1 554,292 - Sama_0448 0.56 -2.3 554,292 - Sama_0448 0.56 -2.3 554,385 + Sama_0448 0.64 -0.5 554,385 + Sama_0448 0.64 -1.2 554,385 + Sama_0448 0.64 -1.4 554,385 + Sama_0448 0.64 -0.3 554,385 + Sama_0448 0.64 -0.4 554,385 + Sama_0448 0.64 -1.0 554,386 - Sama_0448 0.64 -1.2 554,386 - Sama_0448 0.64 -1.5 554,386 - Sama_0448 0.64 -2.0 554,535 + Sama_0448 0.76 -0.9 554,535 + Sama_0448 0.76 -2.1 554,536 - Sama_0448 0.76 +1.1 554,717 + -2.4 554,717 + -2.4 554,717 + -1.6 554,717 + +0.1 554,717 + -0.2 554,717 + -2.6 554,717 + -1.7 554,717 + -0.9 554,718 - -1.0 554,718 - -1.6 554,718 - -1.4 554,718 - -0.6 554,718 - -1.4 554,718 - -2.1 554,828 + +0.9 554,828 + -2.3 554,828 + +0.7 554,829 - -3.4 554,829 - -2.0 554,842 + -0.4 554,842 + -1.4 554,843 - +0.3 554,851 + +0.6 554,851 + +0.2 554,852 - -2.1 554,852 - -0.6 554,857 + +0.8 554,858 - -0.2 554,904 + -1.0 554,905 - -0.3 554,957 + -1.5 554,957 + +1.7 554,957 + +0.4 554,957 + -0.7 554,957 + -1.4 554,957 + -0.2 554,957 + -1.5 554,957 + +0.2 554,957 + +0.0 554,958 - -0.1 554,958 - +0.1 554,958 - -1.1 554,958 - -1.6 554,958 - -1.0 554,958 - -1.0 554,958 - +1.5 554,958 - -1.2 554,958 - -0.2 554,964 + -2.0 554,964 + -0.9 554,964 + +0.8 554,965 - +1.6 554,965 - -0.1 555,092 + +0.4 555,093 - +2.2 555,103 + +2.3 555,158 - -0.2 555,158 - -0.3 555,158 - -0.2 555,187 - Sama_0449 0.10 -0.7 555,214 + Sama_0449 0.12 -1.0 555,214 + Sama_0449 0.12 -0.2 555,215 - Sama_0449 0.12 -2.1 555,215 - Sama_0449 0.12 -1.9 555,215 - Sama_0449 0.12 -1.9 555,215 - Sama_0449 0.12 -1.0 555,216 + Sama_0449 0.12 -0.6 555,216 + Sama_0449 0.12 +1.0 555,257 + Sama_0449 0.14 +2.1 555,257 + Sama_0449 0.14 -0.2 555,258 - Sama_0449 0.14 +0.6 555,258 - Sama_0449 0.14 -0.0 555,266 - Sama_0449 0.15 -2.3 555,296 + Sama_0449 0.16 -0.2 555,296 + Sama_0449 0.16 +0.5 555,296 + Sama_0449 0.16 -0.9 555,296 + Sama_0449 0.16 -0.1 555,297 - Sama_0449 0.16 -0.5 555,297 - Sama_0449 0.16 +2.4 555,297 - Sama_0449 0.16 -2.0 555,301 + Sama_0449 0.16 +0.1 555,316 + Sama_0449 0.17 -1.8 555,316 + Sama_0449 0.17 -1.0 555,407 + Sama_0449 0.22 -0.2 555,407 + Sama_0449 0.22 -1.8 555,407 + Sama_0449 0.22 -1.2 555,408 - Sama_0449 0.22 -0.7 555,408 - Sama_0449 0.22 +0.6 555,408 - Sama_0449 0.22 -0.8 555,411 + Sama_0449 0.22 -1.6 555,411 + Sama_0449 0.22 -1.8 555,411 + Sama_0449 0.22 +1.4 555,411 + Sama_0449 0.22 +0.3 555,411 + Sama_0449 0.22 -2.2 555,411 + Sama_0449 0.22 +1.8 555,411 + Sama_0449 0.22 -0.3 555,412 - Sama_0449 0.22 -0.4 555,412 - Sama_0449 0.22 -1.8 555,412 - Sama_0449 0.22 +2.0 555,412 - Sama_0449 0.22 -0.8 555,412 - Sama_0449 0.22 -1.6 555,412 - Sama_0449 0.22 +0.6 555,412 - Sama_0449 0.22 +0.7 555,412 - Sama_0449 0.22 -2.2 555,412 - Sama_0449 0.22 +0.2 555,412 - Sama_0449 0.22 -0.9 555,413 + Sama_0449 0.22 -2.3 555,413 + Sama_0449 0.22 -0.0 555,413 + Sama_0449 0.22 -0.4 555,413 + Sama_0449 0.22 -1.1 555,413 + Sama_0449 0.22 +1.1 555,413 + Sama_0449 0.22 -0.2 555,413 + Sama_0449 0.22 -0.3 555,414 - Sama_0449 0.22 +2.1 555,414 - Sama_0449 0.22 -1.2 555,476 + Sama_0449 0.26 +0.0 555,476 + Sama_0449 0.26 +1.3 555,476 + Sama_0449 0.26 +1.4 555,477 - Sama_0449 0.26 -1.6 555,477 - Sama_0449 0.26 -0.8 555,477 - Sama_0449 0.26 +0.6 555,477 - Sama_0449 0.26 +1.4 555,505 - Sama_0449 0.27 -0.3 555,564 - Sama_0449 0.30 +2.4 555,564 - Sama_0449 0.30 -1.0 555,634 - Sama_0449 0.34 +2.5 555,639 + Sama_0449 0.34 -1.7 555,651 + Sama_0449 0.35 -2.4 555,652 - Sama_0449 0.35 +1.4 555,695 + Sama_0449 0.37 +1.0 555,754 + Sama_0449 0.40 +2.2 555,754 + Sama_0449 0.40 +2.1 555,754 + Sama_0449 0.40 -0.5 555,754 + Sama_0449 0.40 -0.8 555,754 + Sama_0449 0.40 -1.5 555,754 + Sama_0449 0.40 +0.5 555,755 - Sama_0449 0.40 +0.7 555,755 - Sama_0449 0.40 +1.0 555,755 - Sama_0449 0.40 -2.9 555,780 + Sama_0449 0.41 +0.1 555,781 - Sama_0449 0.42 -1.2 555,781 - Sama_0449 0.42 +1.9
Or see this region's nucleotide sequence