Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrD and ubiA are separated by 79 nucleotides ubiA and Sama_0421 overlap by 50 nucleotides
Sama_0419: uvrD - DNA-dependent helicase II (RefSeq), at 515,732 to 517,897
uvrD
Sama_0420: ubiA - 4-hydroxybenzoate octaprenyltransferase (RefSeq), at 517,977 to 518,849
ubiA
Sama_0421: Sama_0421 - TMAO reductase system periplasmic protein TorT (RefSeq), at 518,800 to 519,885
_0421
Position (kb) 517
518
519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 516.984 kb on + strand, within uvrD at 516.984 kb on + strand, within uvrD at 516.984 kb on + strand, within uvrD at 516.985 kb on - strand, within uvrD at 516.985 kb on - strand, within uvrD at 516.985 kb on - strand, within uvrD at 516.985 kb on - strand, within uvrD at 516.985 kb on - strand, within uvrD at 516.985 kb on - strand, within uvrD at 517.004 kb on - strand, within uvrD at 517.004 kb on - strand, within uvrD at 517.016 kb on - strand, within uvrD at 517.016 kb on - strand, within uvrD at 517.201 kb on + strand, within uvrD at 517.202 kb on - strand, within uvrD at 517.202 kb on - strand, within uvrD at 517.211 kb on + strand, within uvrD at 517.211 kb on + strand, within uvrD at 517.211 kb on + strand, within uvrD at 517.211 kb on + strand, within uvrD at 517.212 kb on - strand, within uvrD at 517.212 kb on - strand, within uvrD at 517.212 kb on - strand, within uvrD at 517.212 kb on - strand, within uvrD at 517.212 kb on - strand, within uvrD at 517.467 kb on + strand, within uvrD at 517.467 kb on + strand, within uvrD at 517.467 kb on + strand, within uvrD at 517.467 kb on + strand, within uvrD at 517.467 kb on + strand, within uvrD at 517.468 kb on - strand, within uvrD at 517.468 kb on - strand, within uvrD at 517.478 kb on - strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.529 kb on + strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.530 kb on - strand, within uvrD at 517.537 kb on + strand, within uvrD at 517.562 kb on + strand, within uvrD at 517.562 kb on + strand, within uvrD at 517.562 kb on + strand, within uvrD at 517.562 kb on + strand, within uvrD at 517.563 kb on - strand, within uvrD at 517.563 kb on - strand, within uvrD at 517.564 kb on + strand, within uvrD at 517.564 kb on + strand, within uvrD at 517.564 kb on + strand, within uvrD at 517.565 kb on - strand, within uvrD at 517.565 kb on - strand, within uvrD at 517.565 kb on - strand, within uvrD at 517.571 kb on + strand, within uvrD at 517.571 kb on + strand, within uvrD at 517.571 kb on + strand, within uvrD at 517.571 kb on + strand, within uvrD at 517.571 kb on + strand, within uvrD at 517.572 kb on - strand, within uvrD at 517.572 kb on - strand, within uvrD at 517.572 kb on - strand, within uvrD at 517.588 kb on + strand, within uvrD at 517.588 kb on + strand, within uvrD at 517.589 kb on - strand, within uvrD at 517.589 kb on - strand, within uvrD at 517.589 kb on - strand, within uvrD at 517.592 kb on + strand, within uvrD at 517.592 kb on + strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.593 kb on - strand, within uvrD at 517.607 kb on + strand, within uvrD at 517.608 kb on - strand, within uvrD at 517.608 kb on - strand, within uvrD at 517.627 kb on + strand, within uvrD at 517.649 kb on + strand, within uvrD at 517.649 kb on + strand, within uvrD at 517.649 kb on + strand, within uvrD at 517.650 kb on - strand, within uvrD at 517.650 kb on - strand, within uvrD at 517.650 kb on - strand, within uvrD at 517.669 kb on + strand, within uvrD at 517.730 kb on - strand at 517.730 kb on - strand at 517.744 kb on - strand at 517.771 kb on + strand at 517.772 kb on - strand at 517.799 kb on + strand at 517.799 kb on + strand at 517.799 kb on + strand at 517.799 kb on + strand at 517.800 kb on - strand at 517.827 kb on + strand at 517.827 kb on + strand at 517.828 kb on - strand at 517.828 kb on - strand at 517.875 kb on - strand at 517.875 kb on - strand at 517.935 kb on + strand at 518.007 kb on + strand at 518.007 kb on + strand at 518.010 kb on + strand at 518.847 kb on + strand at 518.847 kb on + strand at 518.914 kb on + strand, within Sama_0421 at 518.914 kb on + strand, within Sama_0421 at 518.914 kb on + strand, within Sama_0421 at 518.914 kb on + strand, within Sama_0421 at 518.914 kb on + strand, within Sama_0421 at 518.915 kb on - strand, within Sama_0421 at 518.915 kb on - strand, within Sama_0421 at 518.947 kb on + strand, within Sama_0421 at 518.948 kb on - strand, within Sama_0421 at 519.035 kb on - strand, within Sama_0421 at 519.035 kb on - strand, within Sama_0421 at 519.085 kb on + strand, within Sama_0421 at 519.085 kb on + strand, within Sama_0421 at 519.085 kb on + strand, within Sama_0421 at 519.086 kb on - strand, within Sama_0421 at 519.086 kb on - strand, within Sama_0421 at 519.104 kb on + strand, within Sama_0421 at 519.105 kb on - strand, within Sama_0421 at 519.112 kb on + strand, within Sama_0421 at 519.112 kb on + strand, within Sama_0421 at 519.143 kb on + strand, within Sama_0421 at 519.144 kb on - strand, within Sama_0421 at 519.185 kb on + strand, within Sama_0421 at 519.185 kb on + strand, within Sama_0421 at 519.185 kb on + strand, within Sama_0421 at 519.185 kb on + strand, within Sama_0421 at 519.186 kb on - strand, within Sama_0421 at 519.186 kb on - strand, within Sama_0421 at 519.186 kb on - strand, within Sama_0421 at 519.186 kb on - strand, within Sama_0421 at 519.186 kb on - strand, within Sama_0421 at 519.254 kb on + strand, within Sama_0421 at 519.254 kb on + strand, within Sama_0421 at 519.254 kb on + strand, within Sama_0421 at 519.276 kb on + strand, within Sama_0421 at 519.276 kb on + strand, within Sama_0421 at 519.277 kb on - strand, within Sama_0421 at 519.277 kb on - strand, within Sama_0421 at 519.277 kb on - strand, within Sama_0421 at 519.277 kb on - strand, within Sama_0421 at 519.289 kb on + strand, within Sama_0421 at 519.289 kb on + strand, within Sama_0421 at 519.289 kb on + strand, within Sama_0421 at 519.290 kb on - strand, within Sama_0421 at 519.290 kb on - strand, within Sama_0421 at 519.358 kb on + strand, within Sama_0421 at 519.358 kb on + strand, within Sama_0421 at 519.358 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.395 kb on + strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.396 kb on - strand, within Sama_0421 at 519.412 kb on - strand, within Sama_0421 at 519.418 kb on - strand, within Sama_0421 at 519.430 kb on + strand, within Sama_0421 at 519.430 kb on + strand, within Sama_0421 at 519.431 kb on - strand, within Sama_0421 at 519.554 kb on + strand, within Sama_0421 at 519.554 kb on + strand, within Sama_0421 at 519.555 kb on - strand, within Sama_0421 at 519.632 kb on + strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.633 kb on - strand, within Sama_0421 at 519.646 kb on + strand, within Sama_0421 at 519.698 kb on + strand, within Sama_0421 at 519.699 kb on - strand, within Sama_0421 at 519.699 kb on - strand, within Sama_0421 at 519.699 kb on - strand, within Sama_0421 at 519.732 kb on + strand, within Sama_0421 at 519.732 kb on + strand, within Sama_0421 at 519.732 kb on + strand, within Sama_0421 at 519.733 kb on - strand, within Sama_0421 at 519.733 kb on - strand, within Sama_0421 at 519.733 kb on - strand, within Sama_0421 at 519.733 kb on - strand, within Sama_0421 at 519.767 kb on + strand, within Sama_0421 at 519.767 kb on + strand, within Sama_0421 at 519.767 kb on + strand, within Sama_0421 at 519.768 kb on - strand, within Sama_0421 at 519.789 kb on + strand at 519.790 kb on - strand at 519.834 kb on + strand at 519.834 kb on + strand at 519.834 kb on + strand at 519.835 kb on - strand at 519.835 kb on - strand at 519.843 kb on + strand at 519.844 kb on - strand at 519.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 516,984 + uvrD Sama_0419 0.58 -1.2 516,984 + uvrD Sama_0419 0.58 -0.2 516,984 + uvrD Sama_0419 0.58 -1.5 516,985 - uvrD Sama_0419 0.58 -0.6 516,985 - uvrD Sama_0419 0.58 -1.6 516,985 - uvrD Sama_0419 0.58 +0.0 516,985 - uvrD Sama_0419 0.58 -0.2 516,985 - uvrD Sama_0419 0.58 -0.8 516,985 - uvrD Sama_0419 0.58 -2.1 517,004 - uvrD Sama_0419 0.59 -1.4 517,004 - uvrD Sama_0419 0.59 +2.3 517,016 - uvrD Sama_0419 0.59 +1.1 517,016 - uvrD Sama_0419 0.59 -1.9 517,201 + uvrD Sama_0419 0.68 -1.9 517,202 - uvrD Sama_0419 0.68 +0.2 517,202 - uvrD Sama_0419 0.68 +0.1 517,211 + uvrD Sama_0419 0.68 -1.1 517,211 + uvrD Sama_0419 0.68 -1.2 517,211 + uvrD Sama_0419 0.68 -1.9 517,211 + uvrD Sama_0419 0.68 -2.4 517,212 - uvrD Sama_0419 0.68 -3.6 517,212 - uvrD Sama_0419 0.68 -2.4 517,212 - uvrD Sama_0419 0.68 -0.5 517,212 - uvrD Sama_0419 0.68 +0.2 517,212 - uvrD Sama_0419 0.68 -2.5 517,467 + uvrD Sama_0419 0.80 -2.5 517,467 + uvrD Sama_0419 0.80 -2.4 517,467 + uvrD Sama_0419 0.80 -2.0 517,467 + uvrD Sama_0419 0.80 -1.8 517,467 + uvrD Sama_0419 0.80 -1.5 517,468 - uvrD Sama_0419 0.80 -1.0 517,468 - uvrD Sama_0419 0.80 +1.1 517,478 - uvrD Sama_0419 0.81 -0.2 517,529 + uvrD Sama_0419 0.83 -2.6 517,529 + uvrD Sama_0419 0.83 +0.2 517,529 + uvrD Sama_0419 0.83 -2.7 517,529 + uvrD Sama_0419 0.83 -1.4 517,529 + uvrD Sama_0419 0.83 -1.2 517,529 + uvrD Sama_0419 0.83 -1.5 517,529 + uvrD Sama_0419 0.83 -1.4 517,529 + uvrD Sama_0419 0.83 -1.3 517,530 - uvrD Sama_0419 0.83 -1.8 517,530 - uvrD Sama_0419 0.83 -0.6 517,530 - uvrD Sama_0419 0.83 -0.5 517,530 - uvrD Sama_0419 0.83 -1.2 517,530 - uvrD Sama_0419 0.83 +2.7 517,530 - uvrD Sama_0419 0.83 +2.1 517,530 - uvrD Sama_0419 0.83 -2.4 517,537 + uvrD Sama_0419 0.83 -1.7 517,562 + uvrD Sama_0419 0.84 -2.1 517,562 + uvrD Sama_0419 0.84 -2.0 517,562 + uvrD Sama_0419 0.84 -1.0 517,562 + uvrD Sama_0419 0.84 -1.2 517,563 - uvrD Sama_0419 0.85 -0.2 517,563 - uvrD Sama_0419 0.85 -1.6 517,564 + uvrD Sama_0419 0.85 +0.2 517,564 + uvrD Sama_0419 0.85 -2.8 517,564 + uvrD Sama_0419 0.85 -2.1 517,565 - uvrD Sama_0419 0.85 +0.8 517,565 - uvrD Sama_0419 0.85 -2.0 517,565 - uvrD Sama_0419 0.85 -1.6 517,571 + uvrD Sama_0419 0.85 -0.2 517,571 + uvrD Sama_0419 0.85 -0.8 517,571 + uvrD Sama_0419 0.85 -0.3 517,571 + uvrD Sama_0419 0.85 -1.1 517,571 + uvrD Sama_0419 0.85 -2.3 517,572 - uvrD Sama_0419 0.85 -1.4 517,572 - uvrD Sama_0419 0.85 -1.0 517,572 - uvrD Sama_0419 0.85 -0.2 517,588 + uvrD Sama_0419 0.86 -2.1 517,588 + uvrD Sama_0419 0.86 -0.8 517,589 - uvrD Sama_0419 0.86 -1.8 517,589 - uvrD Sama_0419 0.86 -0.9 517,589 - uvrD Sama_0419 0.86 -2.4 517,592 + uvrD Sama_0419 0.86 -0.5 517,592 + uvrD Sama_0419 0.86 -0.7 517,593 - uvrD Sama_0419 0.86 +0.4 517,593 - uvrD Sama_0419 0.86 -1.4 517,593 - uvrD Sama_0419 0.86 +0.8 517,593 - uvrD Sama_0419 0.86 -1.2 517,593 - uvrD Sama_0419 0.86 +1.6 517,593 - uvrD Sama_0419 0.86 -0.5 517,593 - uvrD Sama_0419 0.86 -0.2 517,607 + uvrD Sama_0419 0.87 -1.9 517,608 - uvrD Sama_0419 0.87 -2.5 517,608 - uvrD Sama_0419 0.87 -0.8 517,627 + uvrD Sama_0419 0.87 +0.8 517,649 + uvrD Sama_0419 0.89 -2.7 517,649 + uvrD Sama_0419 0.89 +1.1 517,649 + uvrD Sama_0419 0.89 +0.4 517,650 - uvrD Sama_0419 0.89 -1.0 517,650 - uvrD Sama_0419 0.89 +1.1 517,650 - uvrD Sama_0419 0.89 +0.3 517,669 + uvrD Sama_0419 0.89 +2.1 517,730 - +1.4 517,730 - -0.2 517,744 - -0.8 517,771 + +1.2 517,772 - +0.0 517,799 + +0.0 517,799 + -2.3 517,799 + +0.3 517,799 + -2.3 517,800 - +2.7 517,827 + +1.6 517,827 + -0.3 517,828 - -2.9 517,828 - +2.0 517,875 - +3.0 517,875 - +4.9 517,935 + -1.4 518,007 + +0.8 518,007 + +0.5 518,010 + +0.8 518,847 + -1.6 518,847 + -0.5 518,914 + Sama_0421 0.10 +1.4 518,914 + Sama_0421 0.10 -1.8 518,914 + Sama_0421 0.10 -1.0 518,914 + Sama_0421 0.10 -0.7 518,914 + Sama_0421 0.10 -0.6 518,915 - Sama_0421 0.11 -0.6 518,915 - Sama_0421 0.11 -2.9 518,947 + Sama_0421 0.14 +0.9 518,948 - Sama_0421 0.14 +1.6 519,035 - Sama_0421 0.22 +2.8 519,035 - Sama_0421 0.22 -0.8 519,085 + Sama_0421 0.26 +1.4 519,085 + Sama_0421 0.26 -0.2 519,085 + Sama_0421 0.26 +0.2 519,086 - Sama_0421 0.26 +1.3 519,086 - Sama_0421 0.26 +1.2 519,104 + Sama_0421 0.28 -0.8 519,105 - Sama_0421 0.28 +2.4 519,112 + Sama_0421 0.29 +1.3 519,112 + Sama_0421 0.29 +1.3 519,143 + Sama_0421 0.32 -1.6 519,144 - Sama_0421 0.32 -1.6 519,185 + Sama_0421 0.35 -1.1 519,185 + Sama_0421 0.35 +0.2 519,185 + Sama_0421 0.35 -0.7 519,185 + Sama_0421 0.35 -1.5 519,186 - Sama_0421 0.36 -0.4 519,186 - Sama_0421 0.36 +1.8 519,186 - Sama_0421 0.36 -0.2 519,186 - Sama_0421 0.36 +0.4 519,186 - Sama_0421 0.36 +0.4 519,254 + Sama_0421 0.42 +0.3 519,254 + Sama_0421 0.42 +2.4 519,254 + Sama_0421 0.42 -0.7 519,276 + Sama_0421 0.44 +1.1 519,276 + Sama_0421 0.44 +1.4 519,277 - Sama_0421 0.44 +1.1 519,277 - Sama_0421 0.44 +0.2 519,277 - Sama_0421 0.44 -1.5 519,277 - Sama_0421 0.44 +0.6 519,289 + Sama_0421 0.45 +0.5 519,289 + Sama_0421 0.45 -2.0 519,289 + Sama_0421 0.45 -1.9 519,290 - Sama_0421 0.45 -1.2 519,290 - Sama_0421 0.45 -2.1 519,358 + Sama_0421 0.51 +0.6 519,358 + Sama_0421 0.51 -2.1 519,358 + Sama_0421 0.51 +0.6 519,395 + Sama_0421 0.55 +0.1 519,395 + Sama_0421 0.55 +0.2 519,395 + Sama_0421 0.55 -1.9 519,395 + Sama_0421 0.55 -1.2 519,395 + Sama_0421 0.55 -1.1 519,395 + Sama_0421 0.55 -1.0 519,396 - Sama_0421 0.55 -1.9 519,396 - Sama_0421 0.55 -0.5 519,396 - Sama_0421 0.55 -1.3 519,396 - Sama_0421 0.55 -1.1 519,396 - Sama_0421 0.55 -0.2 519,396 - Sama_0421 0.55 -1.1 519,396 - Sama_0421 0.55 +1.9 519,396 - Sama_0421 0.55 -0.8 519,396 - Sama_0421 0.55 -2.0 519,396 - Sama_0421 0.55 +0.8 519,396 - Sama_0421 0.55 -1.1 519,396 - Sama_0421 0.55 +2.5 519,412 - Sama_0421 0.56 -0.2 519,418 - Sama_0421 0.57 +2.4 519,430 + Sama_0421 0.58 -1.9 519,430 + Sama_0421 0.58 -1.1 519,431 - Sama_0421 0.58 -1.8 519,554 + Sama_0421 0.69 +0.4 519,554 + Sama_0421 0.69 -0.8 519,555 - Sama_0421 0.70 -0.2 519,632 + Sama_0421 0.77 -2.3 519,633 - Sama_0421 0.77 -1.6 519,633 - Sama_0421 0.77 +0.4 519,633 - Sama_0421 0.77 -1.8 519,633 - Sama_0421 0.77 -1.8 519,633 - Sama_0421 0.77 -1.5 519,633 - Sama_0421 0.77 +1.4 519,646 + Sama_0421 0.78 -1.6 519,698 + Sama_0421 0.83 +0.9 519,699 - Sama_0421 0.83 +0.6 519,699 - Sama_0421 0.83 +1.1 519,699 - Sama_0421 0.83 -1.2 519,732 + Sama_0421 0.86 +0.5 519,732 + Sama_0421 0.86 +1.1 519,732 + Sama_0421 0.86 -1.6 519,733 - Sama_0421 0.86 -0.8 519,733 - Sama_0421 0.86 +1.0 519,733 - Sama_0421 0.86 +0.8 519,733 - Sama_0421 0.86 +0.8 519,767 + Sama_0421 0.89 +1.2 519,767 + Sama_0421 0.89 -2.0 519,767 + Sama_0421 0.89 +0.9 519,768 - Sama_0421 0.89 +0.2 519,789 + -1.3 519,790 - +0.8 519,834 + +1.3 519,834 + -1.2 519,834 + +3.9 519,835 - -1.4 519,835 - +0.2 519,843 + -1.4 519,844 - -0.8 519,844 - -1.3
Or see this region's nucleotide sequence