Strain Fitness in Shewanella amazonensis SB2B around Sama_0413

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
508,577	+				+1.2
508,577	+				-0.5
508,593	+				+0.4
508,593	+				-1.2
508,593	+				-2.1
508,594	-				+1.4
508,594	-				+0.3
508,610	+				-0.5
508,616	+				-0.7
508,616	+				-1.4
508,617	-				-1.9
508,622	+				-0.1
508,622	+				+0.9
508,622	+				+0.5
508,623	-				+1.4
508,623	-				+2.1
508,623	-				-1.3
508,638	-				-2.1
508,699	+				-0.3
508,699	+				-1.4
508,699	+				-2.3
508,699	+				+4.6
508,700	-				+4.3
508,700	-				-1.9
508,702	+				-1.7
508,703	-				+0.1
508,707	+				-2.7
508,707	+				-1.3
508,707	+				-1.8
508,707	+				-0.2
508,708	-				+0.7
508,708	-				+0.2
508,708	-				+0.4
508,708	-				-0.8
508,723	-				-1.9
508,734	-				-0.1
508,769	+				+2.1
508,769	+				+0.5
508,770	-				+2.3
508,770	-				+0.5
508,770	-				+1.1
508,770	-				-0.3
508,851	+		Sama_0412	0.12	+2.2
508,851	+		Sama_0412	0.12	-1.9
508,852	-		Sama_0412	0.12	-0.7
508,869	+		Sama_0412	0.14	-0.2
508,870	-		Sama_0412	0.15	+1.4
508,903	-		Sama_0412	0.19	+0.2
508,909	+		Sama_0412	0.20	-2.3
508,909	+		Sama_0412	0.20	-0.8
508,909	+		Sama_0412	0.20	+1.8
508,909	+		Sama_0412	0.20	-0.6
508,910	-		Sama_0412	0.20	-2.2
508,918	+		Sama_0412	0.21	-1.6
508,918	+		Sama_0412	0.21	-1.9
508,918	+		Sama_0412	0.21	-0.4
508,977	+		Sama_0412	0.29	+0.7
508,977	+		Sama_0412	0.29	+0.0
508,977	+		Sama_0412	0.29	-0.6
508,978	-		Sama_0412	0.29	-0.6
508,978	-		Sama_0412	0.29	-2.0
508,978	-		Sama_0412	0.29	-0.4
508,978	-		Sama_0412	0.29	+1.1
508,978	-		Sama_0412	0.29	-1.9
509,063	+		Sama_0412	0.40	-1.2
509,063	+		Sama_0412	0.40	-0.2
509,063	+		Sama_0412	0.40	+0.4
509,064	-		Sama_0412	0.40	+0.0
509,064	-		Sama_0412	0.40	+0.2
509,064	-		Sama_0412	0.40	+2.5
509,064	-		Sama_0412	0.40	-0.5
509,064	-		Sama_0412	0.40	+1.6
509,064	-		Sama_0412	0.40	+0.2
509,064	-		Sama_0412	0.40	+0.5
509,160	+		Sama_0412	0.53	-3.0
509,160	+		Sama_0412	0.53	+1.0
509,160	+		Sama_0412	0.53	-0.7
509,160	+		Sama_0412	0.53	-0.8
509,161	-		Sama_0412	0.53	-1.2
509,161	-		Sama_0412	0.53	-2.5
509,161	-		Sama_0412	0.53	-0.2
509,232	+		Sama_0412	0.62	-1.5
509,239	+		Sama_0412	0.63	+0.4
509,239	+		Sama_0412	0.63	-0.4
509,239	+		Sama_0412	0.63	-1.1
509,240	-		Sama_0412	0.63	+2.5
509,240	-		Sama_0412	0.63	+0.6
509,240	-		Sama_0412	0.63	-1.1
509,240	-		Sama_0412	0.63	+0.1
509,267	+		Sama_0412	0.67	+1.2
509,267	+		Sama_0412	0.67	-1.2
509,268	-		Sama_0412	0.67	-0.4
509,268	-		Sama_0412	0.67	-0.2
509,335	+		Sama_0412	0.76	+0.5
509,335	+		Sama_0412	0.76	+0.4
509,336	-		Sama_0412	0.76	-1.5
509,336	-		Sama_0412	0.76	-0.2
509,361	+		Sama_0412	0.79	-0.8
509,421	+		Sama_0412	0.87	+1.0
509,421	+		Sama_0412	0.87	-0.2
509,421	+		Sama_0412	0.87	+2.4
509,461	-				+0.1
509,530	-				+0.5
509,558	-				+0.6
509,586	-				-0.6
509,603	+				-1.0
509,604	-				-2.0
509,604	-				+2.4
509,634	-				-1.6
509,634	-				-0.9
509,634	-				-2.5
509,648	+				-0.4
509,654	+		Sama_0413	0.10	-1.2
509,654	+		Sama_0413	0.10	-0.4
509,717	+		Sama_0413	0.19	+0.5
509,718	-		Sama_0413	0.19	+0.2
509,718	-		Sama_0413	0.19	+2.9
509,753	+		Sama_0413	0.24	-1.1
509,753	+		Sama_0413	0.24	+0.4
509,753	+		Sama_0413	0.24	+2.0
509,754	-		Sama_0413	0.24	-1.0
509,776	+		Sama_0413	0.27	-1.4
509,776	+		Sama_0413	0.27	+0.9
509,777	-		Sama_0413	0.27	+0.8
509,777	-		Sama_0413	0.27	-1.6
509,827	-		Sama_0413	0.33	+1.4
509,829	-		Sama_0413	0.34	-0.1
509,868	+		Sama_0413	0.39	-0.8
509,869	-		Sama_0413	0.39	+0.6
509,897	+		Sama_0413	0.43	-0.8
509,898	-		Sama_0413	0.43	+3.0
509,915	+		Sama_0413	0.45	-1.4
509,916	+		Sama_0413	0.45	-0.4
509,916	-		Sama_0413	0.45	+0.2
509,916	-		Sama_0413	0.45	+1.0
509,934	+		Sama_0413	0.48	+1.2
509,934	+		Sama_0413	0.48	+1.8
509,935	-		Sama_0413	0.48	+2.1
509,954	+		Sama_0413	0.50	-2.2
509,954	+		Sama_0413	0.50	-0.6
509,954	+		Sama_0413	0.50	-0.3
509,954	+		Sama_0413	0.50	+1.2
509,955	-		Sama_0413	0.50	+1.7
509,955	-		Sama_0413	0.50	-2.0
509,955	-		Sama_0413	0.50	+0.9
509,955	-		Sama_0413	0.50	-1.4
509,955	-		Sama_0413	0.50	-2.9
509,969	-		Sama_0413	0.52	-0.3
510,009	+		Sama_0413	0.58	+0.3
510,009	+		Sama_0413	0.58	+0.9
510,010	-		Sama_0413	0.58	+2.1
510,010	-		Sama_0413	0.58	+1.6
510,010	-		Sama_0413	0.58	-2.6
510,039	+		Sama_0413	0.62	+1.0
510,040	-		Sama_0413	0.62	-1.4
510,073	+		Sama_0413	0.66	+1.2
510,073	+		Sama_0413	0.66	-0.4
510,074	-		Sama_0413	0.66	-0.6
510,083	+		Sama_0413	0.67	-0.2
510,083	+		Sama_0413	0.67	-1.3
510,083	+		Sama_0413	0.67	-0.0
510,084	-		Sama_0413	0.68	-1.2
510,084	-		Sama_0413	0.68	+0.7
510,084	-		Sama_0413	0.68	+1.6
510,084	-		Sama_0413	0.68	+2.7
510,084	-		Sama_0413	0.68	-1.6
510,126	+		Sama_0413	0.73	-0.5
510,126	+		Sama_0413	0.73	+3.0
510,156	-		Sama_0413	0.77	+0.4
510,211	+		Sama_0413	0.84	-1.2
510,211	+		Sama_0413	0.84	-2.1
510,211	+		Sama_0413	0.84	-0.4
510,212	-		Sama_0413	0.85	+0.1
510,212	-		Sama_0413	0.85	-1.1
510,212	-		Sama_0413	0.85	+0.6
510,218	+		Sama_0413	0.85	-0.8
510,219	-		Sama_0413	0.86	+0.2
510,230	+		Sama_0413	0.87	+0.5
510,230	+		Sama_0413	0.87	+0.2
510,273	+				-0.4
510,274	-				-1.2
510,274	-				-1.5
510,278	+				-0.2
510,279	-				+0.0
510,279	-				+0.0
510,279	-				-2.1
510,279	-				+2.6
510,279	-				-0.0
510,328	+				+1.5
510,329	-				+4.0
510,329	-				-1.5
510,345	+				-2.6
510,377	+				-1.1
510,377	+				+0.9
510,377	+				-0.2
510,377	+				-3.4
510,377	+				+0.6
510,377	+				-1.8
510,377	+				+0.3
510,377	+				-0.5
510,377	+				+1.4
510,377	+				+2.5
510,378	-				+1.5
510,378	-				-3.0
510,378	-				-1.9
510,378	-				+0.2
510,378	-				-1.2
510,378	-				+1.6
510,440	+				-1.8
510,440	+				+0.1
510,440	+				-0.6
510,440	+				-1.5
510,441	-				-0.9
510,442	+				+1.8
510,442	+				+1.0
510,443	-				+1.4
510,443	-				-0.6
510,443	-				+0.8
510,510	-				-0.2
510,530	+				-0.1
510,530	+				-0.3
510,531	-				+0.6
510,531	-				-1.4
510,572	-				-2.4
510,583	+				-1.0
510,583	+				-0.4
510,583	+				-0.2
510,584	-				-1.2
510,584	-				-2.6
510,627	+				-0.3
510,656	+				+0.6
510,656	+				-0.4
510,657	-				+0.8
510,657	-				-1.4
510,657	-				+1.2
510,657	-				+0.7
510,658	-				+1.1
510,659	+				-2.1
510,660	-				-0.2
510,660	-				+0.1
510,660	-				+0.0
510,686	+				+0.3
510,686	+				-2.9
510,686	+				-0.6
510,687	-				-0.9
510,688	+				-0.1
510,688	+				-0.2
510,688	+				-3.1
510,689	-				-1.3
510,749	+				-0.6
510,749	+				-1.0
510,767	+				+0.0
510,767	+				+0.0
510,767	+				+0.2
510,768	-				-0.4
510,791	+		Sama_0414	0.14	-0.1
510,791	+		Sama_0414	0.14	+0.4
510,792	-		Sama_0414	0.15	-2.5
510,806	+		Sama_0414	0.18	+0.1
510,806	+		Sama_0414	0.18	-1.6
510,806	+		Sama_0414	0.18	+0.1
510,806	+		Sama_0414	0.18	-0.9
510,807	-		Sama_0414	0.18	+2.5
510,807	-		Sama_0414	0.18	-2.4
510,807	-		Sama_0414	0.18	-0.5
510,807	-		Sama_0414	0.18	-1.2
510,812	+		Sama_0414	0.19	-2.1
510,812	+		Sama_0414	0.19	+0.5
510,812	+		Sama_0414	0.19	+0.5
510,813	-		Sama_0414	0.19	+1.8
510,813	-		Sama_0414	0.19	+0.7
510,914	+		Sama_0414	0.41	-1.8
510,914	+		Sama_0414	0.41	-0.0
510,915	-		Sama_0414	0.41	-1.9
510,936	+		Sama_0414	0.45	+0.2
510,937	-		Sama_0414	0.46	+0.5
510,937	-		Sama_0414	0.46	+0.7
510,937	-		Sama_0414	0.46	+0.9
510,939	+		Sama_0414	0.46	-2.1
510,940	-		Sama_0414	0.46	+0.4
510,971	+		Sama_0414	0.53	-0.5
510,971	+		Sama_0414	0.53	-0.5
510,971	+		Sama_0414	0.53	-1.0
510,972	-		Sama_0414	0.53	+3.3
510,972	-		Sama_0414	0.53	-0.4
510,972	-		Sama_0414	0.53	-0.9
510,972	-		Sama_0414	0.53	-0.5
510,996	+		Sama_0414	0.58	-0.1
510,996	+		Sama_0414	0.58	+1.1
510,996	+		Sama_0414	0.58	-1.9
510,997	-		Sama_0414	0.58	-1.9
510,997	-		Sama_0414	0.58	-0.3
510,997	-		Sama_0414	0.58	-1.2
510,997	-		Sama_0414	0.58	-2.2
511,000	+		Sama_0414	0.59	-0.3
511,000	+		Sama_0414	0.59	+0.2
511,000	+		Sama_0414	0.59	+0.2
511,000	+		Sama_0414	0.59	-0.9
511,000	+		Sama_0414	0.59	+0.3
511,000	+		Sama_0414	0.59	+0.5
511,000	+		Sama_0414	0.59	-2.4
511,000	+		Sama_0414	0.59	-0.1
511,000	+		Sama_0414	0.59	-0.4
511,000	+		Sama_0414	0.59	-0.7
511,000	+		Sama_0414	0.59	+1.8
511,001	-		Sama_0414	0.59	-0.5
511,001	-		Sama_0414	0.59	+1.7
511,001	-		Sama_0414	0.59	-0.5
511,001	-		Sama_0414	0.59	-1.4
511,001	-		Sama_0414	0.59	+1.8
511,001	-		Sama_0414	0.59	-0.0
511,001	-		Sama_0414	0.59	-1.8
511,001	-		Sama_0414	0.59	-1.1
511,001	-		Sama_0414	0.59	+1.6
511,031	+		Sama_0414	0.66	+0.2
511,031	+		Sama_0414	0.66	-0.8
511,032	-		Sama_0414	0.66	-1.1
511,032	-		Sama_0414	0.66	+0.5
511,124	+		Sama_0414	0.85	-0.5
511,226	+				-0.3
511,226	+				+1.1
511,226	+				+1.8
511,255	+				-0.8
511,256	-				+0.1