Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0381 and Sama_0382 are separated by 371 nucleotides
Sama_0381: Sama_0381 - 2-deoxyglucose-6-phosphatase (RefSeq), at 469,245 to 469,910
_0381
Sama_0382: Sama_0382 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (RefSeq), at 470,282 to 472,879
_0382
Position (kb) 470
471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 469.456 kb on + strand, within Sama_0381 at 469.457 kb on - strand, within Sama_0381 at 469.457 kb on - strand, within Sama_0381 at 469.457 kb on - strand, within Sama_0381 at 469.457 kb on - strand, within Sama_0381 at 469.457 kb on - strand, within Sama_0381 at 469.516 kb on + strand, within Sama_0381 at 469.517 kb on - strand, within Sama_0381 at 469.589 kb on + strand, within Sama_0381 at 469.590 kb on - strand, within Sama_0381 at 469.590 kb on - strand, within Sama_0381 at 469.590 kb on - strand, within Sama_0381 at 469.609 kb on + strand, within Sama_0381 at 469.659 kb on - strand, within Sama_0381 at 469.668 kb on + strand, within Sama_0381 at 469.668 kb on + strand, within Sama_0381 at 469.669 kb on - strand, within Sama_0381 at 469.708 kb on + strand, within Sama_0381 at 469.708 kb on + strand, within Sama_0381 at 469.708 kb on + strand, within Sama_0381 at 469.708 kb on + strand, within Sama_0381 at 469.708 kb on + strand, within Sama_0381 at 469.709 kb on - strand, within Sama_0381 at 469.709 kb on - strand, within Sama_0381 at 469.709 kb on - strand, within Sama_0381 at 469.709 kb on - strand, within Sama_0381 at 469.709 kb on - strand, within Sama_0381 at 469.709 kb on - strand, within Sama_0381 at 469.709 kb on - strand, within Sama_0381 at 469.712 kb on + strand, within Sama_0381 at 469.712 kb on + strand, within Sama_0381 at 469.712 kb on + strand, within Sama_0381 at 469.712 kb on + strand, within Sama_0381 at 469.713 kb on - strand, within Sama_0381 at 469.713 kb on - strand, within Sama_0381 at 469.713 kb on - strand, within Sama_0381 at 469.733 kb on - strand, within Sama_0381 at 469.733 kb on - strand, within Sama_0381 at 469.738 kb on + strand, within Sama_0381 at 469.739 kb on - strand, within Sama_0381 at 469.739 kb on - strand, within Sama_0381 at 469.739 kb on - strand, within Sama_0381 at 469.739 kb on - strand, within Sama_0381 at 469.751 kb on + strand, within Sama_0381 at 469.751 kb on + strand, within Sama_0381 at 469.752 kb on - strand, within Sama_0381 at 469.757 kb on + strand, within Sama_0381 at 469.825 kb on + strand, within Sama_0381 at 469.825 kb on + strand, within Sama_0381 at 469.826 kb on - strand, within Sama_0381 at 469.859 kb on + strand at 469.859 kb on + strand at 469.860 kb on - strand at 469.860 kb on - strand at 469.863 kb on + strand at 469.863 kb on + strand at 469.863 kb on + strand at 469.863 kb on + strand at 469.863 kb on + strand at 469.863 kb on + strand at 469.863 kb on + strand at 469.863 kb on + strand at 469.863 kb on + strand at 469.864 kb on - strand at 469.864 kb on - strand at 469.864 kb on - strand at 469.864 kb on - strand at 469.864 kb on - strand at 469.864 kb on - strand at 469.864 kb on - strand at 469.864 kb on - strand at 469.864 kb on - strand at 469.864 kb on - strand at 469.874 kb on + strand at 469.875 kb on - strand at 469.875 kb on - strand at 469.875 kb on - strand at 469.905 kb on + strand at 469.938 kb on - strand at 469.938 kb on - strand at 469.938 kb on - strand at 470.064 kb on + strand at 470.064 kb on + strand at 470.064 kb on + strand at 470.064 kb on + strand at 470.064 kb on + strand at 470.065 kb on - strand at 470.085 kb on + strand at 470.086 kb on - strand at 470.097 kb on + strand at 470.161 kb on + strand at 470.177 kb on + strand at 472.877 kb on + strand at 472.877 kb on + strand at 472.877 kb on + strand at 472.878 kb on - strand at 472.878 kb on - strand at 472.881 kb on + strand at 472.949 kb on + strand at 472.949 kb on + strand at 472.950 kb on - strand at 472.950 kb on - strand at 472.950 kb on - strand at 472.950 kb on - strand at 472.950 kb on - strand at 473.004 kb on + strand at 473.004 kb on + strand at 473.004 kb on + strand at 473.004 kb on + strand at 473.005 kb on - strand at 473.005 kb on - strand at 473.005 kb on - strand at 473.099 kb on + strand at 473.099 kb on + strand at 473.099 kb on + strand at 473.159 kb on + strand at 473.160 kb on - strand at 473.181 kb on + strand at 473.181 kb on + strand at 473.182 kb on - strand at 473.182 kb on - strand at 473.182 kb on - strand at 473.186 kb on - strand at 473.186 kb on - strand at 473.205 kb on + strand at 473.236 kb on + strand at 473.237 kb on - strand at 473.237 kb on - strand at 473.268 kb on + strand at 473.269 kb on - strand at 473.269 kb on - strand at 473.269 kb on - strand at 473.270 kb on + strand at 473.271 kb on - strand at 473.271 kb on - strand at 473.292 kb on + strand at 473.315 kb on - strand at 473.317 kb on - strand at 473.338 kb on + strand at 473.367 kb on - strand at 473.395 kb on - strand at 473.399 kb on + strand at 473.399 kb on + strand at 473.420 kb on - strand at 473.429 kb on + strand at 473.431 kb on + strand at 473.447 kb on - strand at 473.537 kb on - strand at 473.556 kb on + strand at 473.557 kb on - strand at 473.611 kb on - strand at 473.614 kb on + strand at 473.639 kb on - strand at 473.642 kb on + strand at 473.642 kb on + strand at 473.642 kb on + strand at 473.646 kb on + strand at 473.682 kb on + strand at 473.689 kb on + strand at 473.693 kb on + strand at 473.695 kb on + strand at 473.720 kb on + strand at 473.761 kb on + strand at 473.791 kb on - strand at 473.842 kb on - strand at 473.844 kb on + strand at 473.850 kb on + strand at 473.850 kb on + strand at 473.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 469,456 + Sama_0381 0.32 +0.7 469,457 - Sama_0381 0.32 -0.1 469,457 - Sama_0381 0.32 +0.9 469,457 - Sama_0381 0.32 +0.5 469,457 - Sama_0381 0.32 -1.1 469,457 - Sama_0381 0.32 -0.1 469,516 + Sama_0381 0.41 -1.4 469,517 - Sama_0381 0.41 -1.8 469,589 + Sama_0381 0.52 +1.3 469,590 - Sama_0381 0.52 +1.4 469,590 - Sama_0381 0.52 -0.4 469,590 - Sama_0381 0.52 -2.7 469,609 + Sama_0381 0.55 -0.5 469,659 - Sama_0381 0.62 -1.4 469,668 + Sama_0381 0.64 +0.0 469,668 + Sama_0381 0.64 +0.6 469,669 - Sama_0381 0.64 -2.6 469,708 + Sama_0381 0.70 +0.1 469,708 + Sama_0381 0.70 -1.4 469,708 + Sama_0381 0.70 +2.2 469,708 + Sama_0381 0.70 -1.0 469,708 + Sama_0381 0.70 +0.2 469,709 - Sama_0381 0.70 -1.7 469,709 - Sama_0381 0.70 -2.0 469,709 - Sama_0381 0.70 -0.5 469,709 - Sama_0381 0.70 -0.7 469,709 - Sama_0381 0.70 -0.7 469,709 - Sama_0381 0.70 -1.8 469,709 - Sama_0381 0.70 +0.1 469,712 + Sama_0381 0.70 -0.9 469,712 + Sama_0381 0.70 -1.9 469,712 + Sama_0381 0.70 -0.9 469,712 + Sama_0381 0.70 +0.1 469,713 - Sama_0381 0.70 -1.0 469,713 - Sama_0381 0.70 -0.5 469,713 - Sama_0381 0.70 -1.4 469,733 - Sama_0381 0.73 -2.5 469,733 - Sama_0381 0.73 +1.9 469,738 + Sama_0381 0.74 -1.2 469,739 - Sama_0381 0.74 -2.4 469,739 - Sama_0381 0.74 +2.3 469,739 - Sama_0381 0.74 +1.0 469,739 - Sama_0381 0.74 -0.4 469,751 + Sama_0381 0.76 -1.5 469,751 + Sama_0381 0.76 -0.3 469,752 - Sama_0381 0.76 -1.1 469,757 + Sama_0381 0.77 -0.9 469,825 + Sama_0381 0.87 +1.0 469,825 + Sama_0381 0.87 +1.6 469,826 - Sama_0381 0.87 -2.0 469,859 + -0.2 469,859 + +3.3 469,860 - -2.0 469,860 - +0.3 469,863 + +0.2 469,863 + +1.1 469,863 + -0.0 469,863 + -1.0 469,863 + +0.9 469,863 + -0.5 469,863 + -1.4 469,863 + -0.4 469,863 + -2.4 469,864 - -0.4 469,864 - +1.0 469,864 - +0.4 469,864 - +1.8 469,864 - -2.4 469,864 - -0.7 469,864 - -0.2 469,864 - -0.1 469,864 - -0.9 469,864 - -0.7 469,874 + -1.4 469,875 - +1.1 469,875 - -1.1 469,875 - -0.2 469,905 + -1.8 469,938 - -0.2 469,938 - -0.2 469,938 - -0.7 470,064 + -2.6 470,064 + -2.6 470,064 + +1.1 470,064 + +0.7 470,064 + +1.5 470,065 - +1.5 470,085 + -0.9 470,086 - -1.2 470,097 + +0.3 470,161 + -2.0 470,177 + -1.9 472,877 + -1.6 472,877 + +0.2 472,877 + -0.5 472,878 - -0.4 472,878 - -1.0 472,881 + -0.3 472,949 + +1.8 472,949 + +0.1 472,950 - +2.2 472,950 - -0.7 472,950 - -1.0 472,950 - +1.3 472,950 - +1.9 473,004 + -1.7 473,004 + +1.0 473,004 + -0.1 473,004 + +0.2 473,005 - +0.3 473,005 - -0.3 473,005 - -1.3 473,099 + -3.1 473,099 + +1.3 473,099 + -0.1 473,159 + -0.5 473,160 - +0.4 473,181 + +1.3 473,181 + -0.8 473,182 - -0.4 473,182 - -2.1 473,182 - -2.5 473,186 - -0.4 473,186 - +0.3 473,205 + +0.6 473,236 + +1.3 473,237 - +0.2 473,237 - -0.3 473,268 + -0.1 473,269 - +2.7 473,269 - +1.6 473,269 - -1.8 473,270 + +0.4 473,271 - -0.2 473,271 - +0.4 473,292 + -1.5 473,315 - -1.4 473,317 - -1.2 473,338 + -0.3 473,367 - +0.2 473,395 - +0.1 473,399 + -2.2 473,399 + -1.4 473,420 - +2.4 473,429 + -0.1 473,431 + +0.2 473,447 - -1.7 473,537 - -0.1 473,556 + +0.8 473,557 - +1.3 473,611 - -0.1 473,614 + +1.3 473,639 - +0.9 473,642 + +0.2 473,642 + +0.5 473,642 + +2.3 473,646 + +0.6 473,682 + -1.2 473,689 + -0.2 473,693 + +2.8 473,695 + -0.2 473,720 + -0.1 473,761 + -0.8 473,791 - -0.5 473,842 - +1.2 473,844 + -0.7 473,850 + -2.3 473,850 + -0.5 473,852 + -0.7
Or see this region's nucleotide sequence