Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0323 and slmA are separated by 116 nucleotides slmA and dut are separated by 28 nucleotides dut and Sama_0326 overlap by 4 nucleotides
Sama_0323: Sama_0323 - prolyl oligopeptidase family protein (RefSeq), at 389,988 to 391,937
_0323
Sama_0324: slmA - nucleoid occlusion protein (RefSeq), at 392,054 to 392,647
slmA
Sama_0325: dut - deoxyuridine 5'-triphosphate nucleotidohydrolase (RefSeq), at 392,676 to 393,134
dut
Sama_0326: Sama_0326 - phosphopantothenoylcysteine decarboxylase., phosphopantothenate--cysteine ligase (RefSeq), at 393,131 to 394,384
_0326
Position (kb) 392
393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 391.694 kb on - strand, within Sama_0323 at 391.793 kb on + strand at 391.802 kb on + strand at 391.803 kb on - strand at 391.807 kb on + strand at 391.807 kb on + strand at 391.807 kb on + strand at 391.807 kb on + strand at 391.808 kb on - strand at 391.808 kb on - strand at 391.808 kb on - strand at 391.808 kb on - strand at 391.830 kb on + strand at 391.830 kb on + strand at 391.830 kb on + strand at 391.830 kb on + strand at 391.831 kb on - strand at 391.831 kb on - strand at 391.831 kb on - strand at 391.831 kb on - strand at 391.831 kb on - strand at 391.929 kb on + strand at 391.929 kb on + strand at 391.930 kb on - strand at 391.930 kb on - strand at 391.930 kb on - strand at 391.930 kb on - strand at 391.961 kb on + strand at 391.962 kb on - strand at 391.962 kb on - strand at 391.969 kb on + strand at 392.009 kb on - strand at 392.026 kb on + strand at 392.026 kb on + strand at 392.026 kb on + strand at 392.035 kb on + strand at 392.036 kb on - strand at 392.045 kb on + strand at 392.055 kb on + strand at 392.055 kb on + strand at 392.055 kb on + strand at 392.056 kb on - strand at 392.056 kb on - strand at 392.056 kb on - strand at 392.056 kb on - strand at 392.056 kb on - strand at 392.056 kb on - strand at 392.064 kb on - strand at 392.064 kb on - strand at 392.066 kb on + strand at 392.066 kb on + strand at 392.067 kb on - strand at 392.067 kb on - strand at 392.080 kb on + strand at 392.080 kb on + strand at 392.081 kb on - strand at 392.139 kb on + strand, within slmA at 392.147 kb on + strand, within slmA at 392.148 kb on - strand, within slmA at 392.353 kb on + strand, within slmA at 392.353 kb on + strand, within slmA at 392.385 kb on - strand, within slmA at 392.385 kb on - strand, within slmA at 392.385 kb on - strand, within slmA at 392.385 kb on - strand, within slmA at 392.385 kb on - strand, within slmA at 392.438 kb on - strand, within slmA at 392.438 kb on - strand, within slmA at 392.438 kb on - strand, within slmA at 392.438 kb on - strand, within slmA at 392.462 kb on - strand, within slmA at 392.462 kb on - strand, within slmA at 392.511 kb on + strand, within slmA at 392.534 kb on + strand, within slmA at 392.534 kb on + strand, within slmA at 392.535 kb on - strand, within slmA at 392.535 kb on - strand, within slmA at 392.560 kb on + strand, within slmA at 392.560 kb on + strand, within slmA at 392.560 kb on + strand, within slmA at 392.560 kb on + strand, within slmA at 392.560 kb on + strand, within slmA at 392.561 kb on - strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.563 kb on + strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.564 kb on - strand, within slmA at 392.611 kb on + strand at 392.611 kb on + strand at 392.612 kb on - strand at 392.612 kb on - strand at 392.612 kb on - strand at 392.612 kb on - strand at 392.664 kb on + strand at 392.664 kb on + strand at 392.664 kb on + strand at 392.664 kb on + strand at 392.665 kb on - strand at 392.665 kb on - strand at 392.665 kb on - strand at 392.809 kb on + strand, within dut at 392.810 kb on - strand, within dut at 392.810 kb on - strand, within dut at 392.810 kb on - strand, within dut at 392.857 kb on + strand, within dut at 392.858 kb on - strand, within dut at 392.892 kb on + strand, within dut at 392.892 kb on + strand, within dut at 392.892 kb on + strand, within dut at 392.893 kb on - strand, within dut at 392.893 kb on - strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.895 kb on + strand, within dut at 392.896 kb on - strand, within dut at 392.896 kb on - strand, within dut at 392.896 kb on - strand, within dut at 392.896 kb on - strand, within dut at 392.896 kb on - strand, within dut at 392.896 kb on - strand, within dut at 392.906 kb on + strand, within dut at 392.906 kb on + strand, within dut at 392.907 kb on - strand, within dut at 392.978 kb on + strand, within dut at 392.979 kb on - strand, within dut at 392.982 kb on + strand, within dut at 392.982 kb on + strand, within dut at 392.982 kb on + strand, within dut at 392.982 kb on + strand, within dut at 392.982 kb on + strand, within dut at 392.982 kb on + strand, within dut at 392.983 kb on - strand, within dut at 392.983 kb on - strand, within dut at 392.983 kb on - strand, within dut at 392.983 kb on - strand, within dut at 392.983 kb on - strand, within dut at 393.006 kb on + strand, within dut at 393.006 kb on + strand, within dut at 393.007 kb on - strand, within dut at 393.007 kb on - strand, within dut at 393.035 kb on + strand, within dut at 393.035 kb on + strand, within dut at 393.035 kb on + strand, within dut at 393.036 kb on - strand, within dut at 393.036 kb on - strand, within dut at 393.036 kb on - strand, within dut at 393.067 kb on + strand, within dut at 393.094 kb on - strand at 393.094 kb on - strand at 393.156 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 391,694 - Sama_0323 0.87 -2.9 391,793 + +1.0 391,802 + +1.7 391,803 - -0.4 391,807 + -2.9 391,807 + -0.7 391,807 + -2.7 391,807 + +1.2 391,808 - +0.5 391,808 - +1.2 391,808 - +0.0 391,808 - -1.1 391,830 + -0.2 391,830 + -1.0 391,830 + -0.2 391,830 + +0.4 391,831 - +0.5 391,831 - +1.8 391,831 - +0.7 391,831 - -1.1 391,831 - +1.2 391,929 + +0.8 391,929 + -0.1 391,930 - +1.0 391,930 - -1.5 391,930 - -1.0 391,930 - -2.6 391,961 + +1.0 391,962 - +0.2 391,962 - +1.1 391,969 + -0.0 392,009 - +1.7 392,026 + -0.5 392,026 + -2.8 392,026 + +2.8 392,035 + +0.7 392,036 - +1.6 392,045 + -0.3 392,055 + -2.3 392,055 + -1.8 392,055 + -1.4 392,056 - -0.8 392,056 - -2.1 392,056 - -0.4 392,056 - -1.2 392,056 - +0.5 392,056 - -0.2 392,064 - -0.6 392,064 - -0.9 392,066 + -2.4 392,066 + -2.1 392,067 - -1.2 392,067 - -2.0 392,080 + -1.3 392,080 + +1.2 392,081 - +0.6 392,139 + slmA Sama_0324 0.14 -1.7 392,147 + slmA Sama_0324 0.16 -2.2 392,148 - slmA Sama_0324 0.16 -0.7 392,353 + slmA Sama_0324 0.50 -1.3 392,353 + slmA Sama_0324 0.50 -0.2 392,385 - slmA Sama_0324 0.56 -0.1 392,385 - slmA Sama_0324 0.56 -3.6 392,385 - slmA Sama_0324 0.56 -2.1 392,385 - slmA Sama_0324 0.56 -1.1 392,385 - slmA Sama_0324 0.56 -1.4 392,438 - slmA Sama_0324 0.65 -0.5 392,438 - slmA Sama_0324 0.65 -2.4 392,438 - slmA Sama_0324 0.65 -2.1 392,438 - slmA Sama_0324 0.65 -1.4 392,462 - slmA Sama_0324 0.69 +5.8 392,462 - slmA Sama_0324 0.69 -1.5 392,511 + slmA Sama_0324 0.77 -1.4 392,534 + slmA Sama_0324 0.81 -2.2 392,534 + slmA Sama_0324 0.81 -3.3 392,535 - slmA Sama_0324 0.81 -1.1 392,535 - slmA Sama_0324 0.81 -2.5 392,560 + slmA Sama_0324 0.85 +2.5 392,560 + slmA Sama_0324 0.85 -1.7 392,560 + slmA Sama_0324 0.85 -1.6 392,560 + slmA Sama_0324 0.85 -1.6 392,560 + slmA Sama_0324 0.85 -2.1 392,561 - slmA Sama_0324 0.85 -2.3 392,563 + slmA Sama_0324 0.86 +0.5 392,563 + slmA Sama_0324 0.86 -0.5 392,563 + slmA Sama_0324 0.86 -1.5 392,563 + slmA Sama_0324 0.86 -1.5 392,563 + slmA Sama_0324 0.86 -1.7 392,563 + slmA Sama_0324 0.86 -1.2 392,563 + slmA Sama_0324 0.86 -0.9 392,563 + slmA Sama_0324 0.86 +0.0 392,563 + slmA Sama_0324 0.86 -0.8 392,563 + slmA Sama_0324 0.86 +1.1 392,563 + slmA Sama_0324 0.86 -1.2 392,563 + slmA Sama_0324 0.86 -3.6 392,563 + slmA Sama_0324 0.86 -1.5 392,563 + slmA Sama_0324 0.86 -0.7 392,563 + slmA Sama_0324 0.86 +1.8 392,563 + slmA Sama_0324 0.86 -2.0 392,564 - slmA Sama_0324 0.86 -1.8 392,564 - slmA Sama_0324 0.86 -2.1 392,564 - slmA Sama_0324 0.86 -2.3 392,564 - slmA Sama_0324 0.86 -1.8 392,564 - slmA Sama_0324 0.86 -0.4 392,564 - slmA Sama_0324 0.86 -2.0 392,564 - slmA Sama_0324 0.86 -0.6 392,564 - slmA Sama_0324 0.86 -3.2 392,564 - slmA Sama_0324 0.86 -1.2 392,564 - slmA Sama_0324 0.86 -1.8 392,564 - slmA Sama_0324 0.86 -2.1 392,564 - slmA Sama_0324 0.86 -0.8 392,564 - slmA Sama_0324 0.86 -3.1 392,564 - slmA Sama_0324 0.86 +0.9 392,611 + -0.7 392,611 + -1.2 392,612 - -1.0 392,612 - -0.2 392,612 - -0.7 392,612 - -1.4 392,664 + -0.7 392,664 + -0.8 392,664 + -1.3 392,664 + -0.8 392,665 - -0.5 392,665 - +0.0 392,665 - -1.0 392,809 + dut Sama_0325 0.29 -1.8 392,810 - dut Sama_0325 0.29 -0.2 392,810 - dut Sama_0325 0.29 +0.8 392,810 - dut Sama_0325 0.29 -0.4 392,857 + dut Sama_0325 0.39 -2.7 392,858 - dut Sama_0325 0.40 -1.0 392,892 + dut Sama_0325 0.47 -1.9 392,892 + dut Sama_0325 0.47 +0.2 392,892 + dut Sama_0325 0.47 -2.6 392,893 - dut Sama_0325 0.47 -0.2 392,893 - dut Sama_0325 0.47 +0.2 392,895 + dut Sama_0325 0.48 -1.6 392,895 + dut Sama_0325 0.48 -2.4 392,895 + dut Sama_0325 0.48 -1.1 392,895 + dut Sama_0325 0.48 -0.8 392,895 + dut Sama_0325 0.48 -2.8 392,895 + dut Sama_0325 0.48 -2.6 392,895 + dut Sama_0325 0.48 -1.0 392,895 + dut Sama_0325 0.48 -0.4 392,895 + dut Sama_0325 0.48 -2.1 392,896 - dut Sama_0325 0.48 -1.2 392,896 - dut Sama_0325 0.48 -0.2 392,896 - dut Sama_0325 0.48 -0.0 392,896 - dut Sama_0325 0.48 +0.6 392,896 - dut Sama_0325 0.48 +0.4 392,896 - dut Sama_0325 0.48 +0.2 392,906 + dut Sama_0325 0.50 -3.5 392,906 + dut Sama_0325 0.50 -3.4 392,907 - dut Sama_0325 0.50 -0.5 392,978 + dut Sama_0325 0.66 -1.8 392,979 - dut Sama_0325 0.66 -1.1 392,982 + dut Sama_0325 0.67 -1.6 392,982 + dut Sama_0325 0.67 -2.8 392,982 + dut Sama_0325 0.67 -0.5 392,982 + dut Sama_0325 0.67 -1.5 392,982 + dut Sama_0325 0.67 +0.2 392,982 + dut Sama_0325 0.67 -3.5 392,983 - dut Sama_0325 0.67 -1.0 392,983 - dut Sama_0325 0.67 -2.0 392,983 - dut Sama_0325 0.67 -1.4 392,983 - dut Sama_0325 0.67 -0.8 392,983 - dut Sama_0325 0.67 -1.9 393,006 + dut Sama_0325 0.72 -1.5 393,006 + dut Sama_0325 0.72 -1.4 393,007 - dut Sama_0325 0.72 -0.5 393,007 - dut Sama_0325 0.72 -0.6 393,035 + dut Sama_0325 0.78 -1.9 393,035 + dut Sama_0325 0.78 -1.5 393,035 + dut Sama_0325 0.78 -1.6 393,036 - dut Sama_0325 0.78 -2.2 393,036 - dut Sama_0325 0.78 -1.4 393,036 - dut Sama_0325 0.78 -1.8 393,067 + dut Sama_0325 0.85 -2.6 393,094 - -1.2 393,094 - -1.9 393,156 - +0.3
Or see this region's nucleotide sequence