Strain Fitness in Shewanella amazonensis SB2B around Sama_0169

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
197,279	+				+0.1
197,291	+				-2.7
197,292	-				-1.0
197,512	+		Sama_0168	0.23	-0.5
197,512	+		Sama_0168	0.23	-0.5
197,513	-		Sama_0168	0.23	+0.2
197,691	-		Sama_0168	0.43	-0.5
197,808	-		Sama_0168	0.55	+1.6
197,808	-		Sama_0168	0.55	+0.8
197,824	+		Sama_0168	0.57	+1.4
197,824	+		Sama_0168	0.57	-1.5
197,835	+		Sama_0168	0.58	+0.9
197,966	+		Sama_0168	0.72	-2.5
197,966	+		Sama_0168	0.72	-0.4
197,966	+		Sama_0168	0.72	+0.3
197,966	+		Sama_0168	0.72	+1.0
197,966	+		Sama_0168	0.72	-2.1
198,171	+				-0.5
198,171	+				-2.1
198,171	+				+2.2
198,171	+				+2.8
198,218	+				+0.4
198,230	+				+0.2
198,240	+				-0.5
198,240	+				-2.0
198,241	-				+2.1
198,241	-				+2.8
198,245	-				+0.8
198,297	+				+2.8
198,390	+				-0.5
198,391	-				-1.2
198,488	-		Sama_0169	0.11	-0.2
198,520	+		Sama_0169	0.13	+0.2
198,521	-		Sama_0169	0.13	-0.2
198,661	+		Sama_0169	0.20	-0.8
198,662	-		Sama_0169	0.20	-0.1
198,735	+		Sama_0169	0.23	-0.5
198,739	+		Sama_0169	0.23	-0.2
198,740	-		Sama_0169	0.23	-2.9
198,816	-		Sama_0169	0.27	-0.2
198,816	-		Sama_0169	0.27	-0.2
198,819	+		Sama_0169	0.27	-0.5
198,966	+		Sama_0169	0.34	+1.1
198,967	-		Sama_0169	0.34	-1.8
198,969	+		Sama_0169	0.34	-1.2
199,075	+		Sama_0169	0.39	+0.2
199,197	+		Sama_0169	0.45	-1.0
199,494	+		Sama_0169	0.59	-0.5
199,654	-		Sama_0169	0.67	-1.0
199,695	+		Sama_0169	0.69	+0.8
199,750	-		Sama_0169	0.71	-1.5
199,780	-		Sama_0169	0.73	+2.3
200,017	-		Sama_0169	0.84	+0.2
200,085	+		Sama_0169	0.87	-0.8
200,143	+		Sama_0169	0.90	-1.5
200,150	-				-1.5
200,281	+				-1.0
200,338	+				-1.2
200,338	+				+0.9
200,339	-				-1.6
200,356	+				-1.9
200,368	+				+0.2
200,862	-		Sama_0170	0.32	+0.6
200,862	-		Sama_0170	0.32	+0.2
200,930	-		Sama_0170	0.36	+0.8
201,026	-		Sama_0170	0.42	-1.6
201,119	-		Sama_0170	0.48	+1.4
201,311	+		Sama_0170	0.60	-1.0
201,325	+		Sama_0170	0.61	+0.2
201,326	-		Sama_0170	0.61	+2.1
201,327	+		Sama_0170	0.61	+0.2
201,328	-		Sama_0170	0.61	-0.5