Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0136 and Sama_0137 are separated by 25 nucleotides Sama_0137 and Sama_0138 are separated by 5 nucleotides
Sama_0136: Sama_0136 - putative metal dependent phosphohydrolase (RefSeq), at 152,768 to 153,964
_0136
Sama_0137: Sama_0137 - molybdopterin biosynthesis protein MoeB (RefSeq), at 153,990 to 154,754
_0137
Sama_0138: Sama_0138 - molybdopterin biosynthesis MoeA protein (RefSeq), at 154,760 to 156,001
_0138
Position (kb) 153
154
155 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 153.101 kb on - strand, within Sama_0136 at 153.101 kb on - strand, within Sama_0136 at 153.101 kb on - strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.147 kb on + strand, within Sama_0136 at 153.147 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.246 kb on - strand, within Sama_0136 at 153.246 kb on - strand, within Sama_0136 at 153.270 kb on + strand, within Sama_0136 at 153.270 kb on + strand, within Sama_0136 at 153.270 kb on + strand, within Sama_0136 at 153.271 kb on - strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.300 kb on - strand, within Sama_0136 at 153.300 kb on - strand, within Sama_0136 at 153.324 kb on + strand, within Sama_0136 at 153.360 kb on + strand, within Sama_0136 at 153.361 kb on - strand, within Sama_0136 at 153.361 kb on - strand, within Sama_0136 at 153.364 kb on + strand, within Sama_0136 at 153.364 kb on + strand, within Sama_0136 at 153.364 kb on + strand, within Sama_0136 at 153.365 kb on - strand, within Sama_0136 at 153.379 kb on + strand, within Sama_0136 at 153.380 kb on - strand, within Sama_0136 at 153.395 kb on - strand, within Sama_0136 at 153.449 kb on + strand, within Sama_0136 at 153.449 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.505 kb on - strand, within Sama_0136 at 153.505 kb on - strand, within Sama_0136 at 153.505 kb on - strand, within Sama_0136 at 153.505 kb on - strand, within Sama_0136 at 153.505 kb on - strand, within Sama_0136 at 153.595 kb on + strand, within Sama_0136 at 153.604 kb on + strand, within Sama_0136 at 153.635 kb on + strand, within Sama_0136 at 153.635 kb on + strand, within Sama_0136 at 153.635 kb on + strand, within Sama_0136 at 153.635 kb on + strand, within Sama_0136 at 153.636 kb on - strand, within Sama_0136 at 153.636 kb on - strand, within Sama_0136 at 153.668 kb on - strand, within Sama_0136 at 153.668 kb on - strand, within Sama_0136 at 153.668 kb on - strand, within Sama_0136 at 153.716 kb on + strand, within Sama_0136 at 153.724 kb on + strand, within Sama_0136 at 153.733 kb on + strand, within Sama_0136 at 153.733 kb on + strand, within Sama_0136 at 153.743 kb on + strand, within Sama_0136 at 153.744 kb on - strand, within Sama_0136 at 153.843 kb on - strand, within Sama_0136 at 153.909 kb on + strand at 153.910 kb on - strand at 153.910 kb on - strand at 153.910 kb on - strand at 153.910 kb on - strand at 153.910 kb on - strand at 153.910 kb on - strand at 153.942 kb on + strand at 153.942 kb on + strand at 153.943 kb on - strand at 153.943 kb on - strand at 153.959 kb on + strand at 153.959 kb on + strand at 153.959 kb on + strand at 153.991 kb on + strand at 153.991 kb on + strand at 153.992 kb on - strand at 153.992 kb on - strand at 154.038 kb on + strand at 154.038 kb on + strand at 154.121 kb on + strand, within Sama_0137 at 154.122 kb on - strand, within Sama_0137 at 154.122 kb on - strand, within Sama_0137 at 154.122 kb on - strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.141 kb on - strand, within Sama_0137 at 154.141 kb on - strand, within Sama_0137 at 154.141 kb on - strand, within Sama_0137 at 154.141 kb on - strand, within Sama_0137 at 154.141 kb on - strand, within Sama_0137 at 154.175 kb on + strand, within Sama_0137 at 154.176 kb on - strand, within Sama_0137 at 154.231 kb on + strand, within Sama_0137 at 154.231 kb on + strand, within Sama_0137 at 154.231 kb on + strand, within Sama_0137 at 154.232 kb on - strand, within Sama_0137 at 154.232 kb on - strand, within Sama_0137 at 154.253 kb on - strand, within Sama_0137 at 154.253 kb on - strand, within Sama_0137 at 154.253 kb on - strand, within Sama_0137 at 154.253 kb on - strand, within Sama_0137 at 154.253 kb on - strand, within Sama_0137 at 154.265 kb on + strand, within Sama_0137 at 154.308 kb on + strand, within Sama_0137 at 154.308 kb on + strand, within Sama_0137 at 154.308 kb on + strand, within Sama_0137 at 154.308 kb on + strand, within Sama_0137 at 154.309 kb on - strand, within Sama_0137 at 154.309 kb on - strand, within Sama_0137 at 154.309 kb on - strand, within Sama_0137 at 154.313 kb on + strand, within Sama_0137 at 154.314 kb on - strand, within Sama_0137 at 154.314 kb on - strand, within Sama_0137 at 154.314 kb on - strand, within Sama_0137 at 154.440 kb on + strand, within Sama_0137 at 154.441 kb on - strand, within Sama_0137 at 154.457 kb on + strand, within Sama_0137 at 154.458 kb on - strand, within Sama_0137 at 154.458 kb on - strand, within Sama_0137 at 154.458 kb on - strand, within Sama_0137 at 154.521 kb on + strand, within Sama_0137 at 154.521 kb on + strand, within Sama_0137 at 154.604 kb on - strand, within Sama_0137 at 154.604 kb on - strand, within Sama_0137 at 154.604 kb on - strand, within Sama_0137 at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.683 kb on - strand at 154.683 kb on - strand at 154.714 kb on + strand at 154.714 kb on + strand at 154.714 kb on + strand at 154.715 kb on - strand at 154.715 kb on - strand at 154.720 kb on - strand at 154.740 kb on + strand at 154.740 kb on + strand at 154.740 kb on + strand at 154.740 kb on + strand at 154.740 kb on + strand at 154.741 kb on - strand at 154.741 kb on - strand at 154.741 kb on - strand at 154.762 kb on - strand at 154.774 kb on + strand at 154.774 kb on + strand at 154.795 kb on + strand at 154.795 kb on + strand at 154.795 kb on + strand at 154.795 kb on + strand at 154.795 kb on + strand at 154.795 kb on + strand at 154.841 kb on - strand at 154.873 kb on + strand at 154.873 kb on + strand at 154.873 kb on + strand at 154.873 kb on + strand at 154.874 kb on - strand at 154.874 kb on - strand at 154.874 kb on - strand at 154.874 kb on - strand at 154.874 kb on - strand at 154.930 kb on + strand, within Sama_0138 at 154.932 kb on - strand, within Sama_0138 at 154.932 kb on - strand, within Sama_0138 at 154.932 kb on - strand, within Sama_0138 at 155.041 kb on + strand, within Sama_0138 at 155.042 kb on - strand, within Sama_0138 at 155.042 kb on - strand, within Sama_0138 at 155.042 kb on - strand, within Sama_0138 at 155.364 kb on + strand, within Sama_0138 at 155.364 kb on + strand, within Sama_0138 at 155.365 kb on - strand, within Sama_0138 at 155.365 kb on - strand, within Sama_0138 at 155.380 kb on - strand, within Sama_0138 at 155.380 kb on - strand, within Sama_0138 at 155.462 kb on + strand, within Sama_0138 at 155.462 kb on + strand, within Sama_0138 at 155.463 kb on - strand, within Sama_0138 at 155.463 kb on - strand, within Sama_0138 at 155.522 kb on + strand, within Sama_0138 at 155.522 kb on + strand, within Sama_0138 at 155.522 kb on + strand, within Sama_0138 at 155.522 kb on + strand, within Sama_0138 at 155.522 kb on + strand, within Sama_0138 at 155.523 kb on - strand, within Sama_0138 at 155.523 kb on - strand, within Sama_0138 at 155.523 kb on - strand, within Sama_0138 at 155.523 kb on - strand, within Sama_0138 at 155.554 kb on + strand, within Sama_0138 at 155.554 kb on + strand, within Sama_0138 at 155.554 kb on + strand, within Sama_0138 at 155.555 kb on - strand, within Sama_0138 at 155.555 kb on - strand, within Sama_0138 at 155.608 kb on + strand, within Sama_0138 at 155.609 kb on - strand, within Sama_0138 at 155.726 kb on - strand, within Sama_0138
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 153,101 - Sama_0136 0.28 -1.6 153,101 - Sama_0136 0.28 +0.8 153,101 - Sama_0136 0.28 -2.8 153,111 + Sama_0136 0.29 -1.5 153,111 + Sama_0136 0.29 -1.3 153,111 + Sama_0136 0.29 -0.7 153,111 + Sama_0136 0.29 +0.2 153,111 + Sama_0136 0.29 +2.1 153,112 - Sama_0136 0.29 -0.5 153,112 - Sama_0136 0.29 -0.5 153,112 - Sama_0136 0.29 -1.8 153,112 - Sama_0136 0.29 -1.0 153,112 - Sama_0136 0.29 -3.7 153,112 - Sama_0136 0.29 -2.8 153,112 - Sama_0136 0.29 -1.1 153,147 + Sama_0136 0.32 -1.1 153,147 + Sama_0136 0.32 -2.6 153,175 + Sama_0136 0.34 -1.7 153,175 + Sama_0136 0.34 -2.0 153,175 + Sama_0136 0.34 -0.8 153,175 + Sama_0136 0.34 -3.3 153,176 - Sama_0136 0.34 +1.5 153,176 - Sama_0136 0.34 -1.2 153,176 - Sama_0136 0.34 -0.2 153,176 - Sama_0136 0.34 -0.3 153,246 - Sama_0136 0.40 -1.1 153,246 - Sama_0136 0.40 -1.0 153,270 + Sama_0136 0.42 -2.0 153,270 + Sama_0136 0.42 -2.2 153,270 + Sama_0136 0.42 -2.3 153,271 - Sama_0136 0.42 -2.1 153,299 + Sama_0136 0.44 -2.3 153,299 + Sama_0136 0.44 -1.5 153,299 + Sama_0136 0.44 -2.2 153,299 + Sama_0136 0.44 -3.5 153,300 - Sama_0136 0.44 -0.1 153,300 - Sama_0136 0.44 -0.2 153,324 + Sama_0136 0.46 -3.0 153,360 + Sama_0136 0.49 -0.8 153,361 - Sama_0136 0.50 -1.8 153,361 - Sama_0136 0.50 +0.2 153,364 + Sama_0136 0.50 -4.5 153,364 + Sama_0136 0.50 -2.3 153,364 + Sama_0136 0.50 -1.3 153,365 - Sama_0136 0.50 -0.8 153,379 + Sama_0136 0.51 +1.5 153,380 - Sama_0136 0.51 -3.0 153,395 - Sama_0136 0.52 -0.3 153,449 + Sama_0136 0.57 -1.2 153,449 + Sama_0136 0.57 -2.4 153,463 + Sama_0136 0.58 -2.0 153,463 + Sama_0136 0.58 -1.1 153,463 + Sama_0136 0.58 -2.2 153,463 + Sama_0136 0.58 -1.0 153,463 + Sama_0136 0.58 -0.2 153,463 + Sama_0136 0.58 -1.2 153,463 + Sama_0136 0.58 +1.3 153,463 + Sama_0136 0.58 -2.5 153,464 - Sama_0136 0.58 -0.9 153,464 - Sama_0136 0.58 -0.5 153,464 - Sama_0136 0.58 -0.3 153,464 - Sama_0136 0.58 -0.9 153,464 - Sama_0136 0.58 +0.2 153,464 - Sama_0136 0.58 -0.8 153,464 - Sama_0136 0.58 -1.9 153,464 - Sama_0136 0.58 -0.8 153,464 - Sama_0136 0.58 -0.7 153,464 - Sama_0136 0.58 -3.1 153,504 + Sama_0136 0.61 -1.3 153,504 + Sama_0136 0.61 -1.2 153,504 + Sama_0136 0.61 -3.7 153,504 + Sama_0136 0.61 -0.0 153,504 + Sama_0136 0.61 -1.0 153,504 + Sama_0136 0.61 -1.2 153,505 - Sama_0136 0.62 +0.2 153,505 - Sama_0136 0.62 -1.6 153,505 - Sama_0136 0.62 -0.5 153,505 - Sama_0136 0.62 -2.9 153,505 - Sama_0136 0.62 -0.8 153,595 + Sama_0136 0.69 -2.5 153,604 + Sama_0136 0.70 -1.9 153,635 + Sama_0136 0.72 -1.8 153,635 + Sama_0136 0.72 -2.0 153,635 + Sama_0136 0.72 -0.8 153,635 + Sama_0136 0.72 +4.6 153,636 - Sama_0136 0.73 -1.0 153,636 - Sama_0136 0.73 -2.1 153,668 - Sama_0136 0.75 -2.0 153,668 - Sama_0136 0.75 -1.9 153,668 - Sama_0136 0.75 -0.2 153,716 + Sama_0136 0.79 -1.8 153,724 + Sama_0136 0.80 -0.6 153,733 + Sama_0136 0.81 -1.1 153,733 + Sama_0136 0.81 -0.2 153,743 + Sama_0136 0.81 -2.7 153,744 - Sama_0136 0.82 -2.3 153,843 - Sama_0136 0.90 +0.1 153,909 + -0.6 153,910 - -0.9 153,910 - -0.2 153,910 - -1.1 153,910 - -1.5 153,910 - +1.1 153,910 - -0.4 153,942 + -1.8 153,942 + -0.7 153,943 - +0.5 153,943 - +0.6 153,959 + -0.4 153,959 + -0.5 153,959 + -1.7 153,991 + -2.7 153,991 + -1.0 153,992 - -0.8 153,992 - +0.1 154,038 + +0.8 154,038 + +0.0 154,121 + Sama_0137 0.17 +1.2 154,122 - Sama_0137 0.17 +1.4 154,122 - Sama_0137 0.17 -1.5 154,122 - Sama_0137 0.17 +0.8 154,140 + Sama_0137 0.20 -1.2 154,140 + Sama_0137 0.20 -2.4 154,140 + Sama_0137 0.20 +2.0 154,140 + Sama_0137 0.20 +0.7 154,140 + Sama_0137 0.20 +1.4 154,140 + Sama_0137 0.20 +1.0 154,140 + Sama_0137 0.20 +0.9 154,140 + Sama_0137 0.20 -0.2 154,140 + Sama_0137 0.20 +0.6 154,141 - Sama_0137 0.20 -1.9 154,141 - Sama_0137 0.20 +1.7 154,141 - Sama_0137 0.20 -0.2 154,141 - Sama_0137 0.20 -1.2 154,141 - Sama_0137 0.20 +2.6 154,175 + Sama_0137 0.24 +2.5 154,176 - Sama_0137 0.24 +2.0 154,231 + Sama_0137 0.32 +1.1 154,231 + Sama_0137 0.32 -0.1 154,231 + Sama_0137 0.32 +0.1 154,232 - Sama_0137 0.32 +1.5 154,232 - Sama_0137 0.32 +0.7 154,253 - Sama_0137 0.34 -0.1 154,253 - Sama_0137 0.34 +0.4 154,253 - Sama_0137 0.34 +0.5 154,253 - Sama_0137 0.34 -1.1 154,253 - Sama_0137 0.34 +0.1 154,265 + Sama_0137 0.36 -0.3 154,308 + Sama_0137 0.42 -1.5 154,308 + Sama_0137 0.42 -1.4 154,308 + Sama_0137 0.42 +0.1 154,308 + Sama_0137 0.42 -1.5 154,309 - Sama_0137 0.42 +1.0 154,309 - Sama_0137 0.42 -0.3 154,309 - Sama_0137 0.42 +1.7 154,313 + Sama_0137 0.42 -0.3 154,314 - Sama_0137 0.42 -0.6 154,314 - Sama_0137 0.42 +1.6 154,314 - Sama_0137 0.42 +2.6 154,440 + Sama_0137 0.59 -2.4 154,441 - Sama_0137 0.59 -0.3 154,457 + Sama_0137 0.61 +0.8 154,458 - Sama_0137 0.61 -1.0 154,458 - Sama_0137 0.61 +0.4 154,458 - Sama_0137 0.61 +1.0 154,521 + Sama_0137 0.69 +0.4 154,521 + Sama_0137 0.69 +0.4 154,604 - Sama_0137 0.80 +1.2 154,604 - Sama_0137 0.80 +1.5 154,604 - Sama_0137 0.80 +1.1 154,680 + +1.0 154,680 + -0.5 154,680 + +0.1 154,680 + -2.7 154,680 + +3.6 154,680 + +1.4 154,680 + +1.5 154,680 + -0.0 154,680 + -3.2 154,680 + +1.3 154,680 + +1.6 154,681 - -1.9 154,681 - +4.0 154,681 - +0.2 154,681 - +0.8 154,681 - -0.8 154,681 - -2.6 154,681 - +0.6 154,681 - +1.3 154,681 - -1.0 154,681 - -1.6 154,681 - -2.1 154,681 - -3.0 154,683 - +1.8 154,683 - +0.7 154,714 + +1.5 154,714 + +1.6 154,714 + +0.6 154,715 - +0.4 154,715 - +2.1 154,720 - -1.3 154,740 + +2.3 154,740 + -2.0 154,740 + +1.6 154,740 + +1.7 154,740 + +0.6 154,741 - -0.6 154,741 - +0.5 154,741 - +1.7 154,762 - +1.0 154,774 + +1.4 154,774 + +1.0 154,795 + -0.3 154,795 + +0.8 154,795 + -0.5 154,795 + -2.1 154,795 + -0.9 154,795 + -0.0 154,841 - +1.2 154,873 + +1.4 154,873 + +1.5 154,873 + +1.2 154,873 + -0.5 154,874 - -1.0 154,874 - +0.6 154,874 - -0.8 154,874 - +0.1 154,874 - -0.0 154,930 + Sama_0138 0.14 -0.4 154,932 - Sama_0138 0.14 -2.9 154,932 - Sama_0138 0.14 -2.3 154,932 - Sama_0138 0.14 +1.4 155,041 + Sama_0138 0.23 -2.3 155,042 - Sama_0138 0.23 +1.7 155,042 - Sama_0138 0.23 +0.3 155,042 - Sama_0138 0.23 +0.1 155,364 + Sama_0138 0.49 -0.0 155,364 + Sama_0138 0.49 -0.9 155,365 - Sama_0138 0.49 -3.4 155,365 - Sama_0138 0.49 -1.2 155,380 - Sama_0138 0.50 -0.9 155,380 - Sama_0138 0.50 +2.1 155,462 + Sama_0138 0.57 -1.6 155,462 + Sama_0138 0.57 +1.1 155,463 - Sama_0138 0.57 +4.3 155,463 - Sama_0138 0.57 +1.5 155,522 + Sama_0138 0.61 -0.0 155,522 + Sama_0138 0.61 +3.2 155,522 + Sama_0138 0.61 -0.6 155,522 + Sama_0138 0.61 -0.9 155,522 + Sama_0138 0.61 +1.2 155,523 - Sama_0138 0.61 +1.5 155,523 - Sama_0138 0.61 +1.8 155,523 - Sama_0138 0.61 -1.6 155,523 - Sama_0138 0.61 +2.5 155,554 + Sama_0138 0.64 +0.4 155,554 + Sama_0138 0.64 +3.4 155,554 + Sama_0138 0.64 -1.9 155,555 - Sama_0138 0.64 +2.6 155,555 - Sama_0138 0.64 -2.1 155,608 + Sama_0138 0.68 +0.5 155,609 - Sama_0138 0.68 -0.8 155,726 - Sama_0138 0.78 -1.5
Or see this region's nucleotide sequence