Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0120 and Sama_0121 are separated by 16 nucleotides Sama_0121 and Sama_0122 overlap by 17 nucleotides Sama_0122 and Sama_0123 overlap by 1 nucleotides
Sama_0120: Sama_0120 - molybdopterin biosynthesis MoeA protein, putative (RefSeq), at 133,572 to 135,371
_0120
Sama_0121: Sama_0121 - molybdopterin-guanine dinucleotide biosynthesis protein (RefSeq), at 135,388 to 135,978
_0121
Sama_0122: Sama_0122 - ABC transporter, ATP-binding protein (RefSeq), at 135,962 to 136,654
_0122
Sama_0123: Sama_0123 - ABC transporter, permease protein (RefSeq), at 136,654 to 137,361
_0123
Position (kb) 135
136 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 134.430 kb on - strand, within Sama_0120 at 134.430 kb on - strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.508 kb on + strand, within Sama_0120 at 134.509 kb on - strand, within Sama_0120 at 134.509 kb on - strand, within Sama_0120 at 134.510 kb on - strand, within Sama_0120 at 134.706 kb on + strand, within Sama_0120 at 134.754 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.891 kb on + strand, within Sama_0120 at 134.916 kb on + strand, within Sama_0120 at 134.916 kb on + strand, within Sama_0120 at 134.916 kb on + strand, within Sama_0120 at 134.917 kb on - strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.007 kb on - strand, within Sama_0120 at 135.007 kb on - strand, within Sama_0120 at 135.029 kb on + strand, within Sama_0120 at 135.029 kb on + strand, within Sama_0120 at 135.030 kb on - strand, within Sama_0120 at 135.039 kb on + strand, within Sama_0120 at 135.039 kb on + strand, within Sama_0120 at 135.039 kb on + strand, within Sama_0120 at 135.040 kb on - strand, within Sama_0120 at 135.040 kb on - strand, within Sama_0120 at 135.050 kb on + strand, within Sama_0120 at 135.050 kb on + strand, within Sama_0120 at 135.051 kb on - strand, within Sama_0120 at 135.051 kb on - strand, within Sama_0120 at 135.051 kb on - strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.207 kb on - strand at 135.252 kb on + strand at 135.316 kb on + strand at 135.316 kb on + strand at 135.316 kb on + strand at 135.317 kb on - strand at 135.317 kb on - strand at 135.334 kb on - strand at 135.409 kb on + strand at 135.410 kb on - strand at 135.410 kb on - strand at 135.410 kb on - strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.419 kb on - strand at 135.419 kb on - strand at 135.419 kb on - strand at 135.419 kb on - strand at 135.442 kb on + strand at 135.442 kb on + strand at 135.443 kb on - strand at 135.443 kb on - strand at 135.443 kb on - strand at 135.498 kb on - strand, within Sama_0121 at 135.590 kb on + strand, within Sama_0121 at 135.591 kb on - strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.734 kb on - strand, within Sama_0121 at 135.781 kb on + strand, within Sama_0121 at 135.781 kb on + strand, within Sama_0121 at 135.782 kb on - strand, within Sama_0121 at 135.804 kb on - strand, within Sama_0121 at 135.804 kb on - strand, within Sama_0121 at 135.865 kb on - strand, within Sama_0121 at 135.901 kb on + strand, within Sama_0121 at 135.978 kb on + strand at 135.978 kb on + strand at 135.978 kb on + strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.980 kb on + strand at 136.045 kb on + strand, within Sama_0122 at 136.045 kb on + strand, within Sama_0122 at 136.046 kb on - strand, within Sama_0122 at 136.097 kb on + strand, within Sama_0122 at 136.098 kb on - strand, within Sama_0122 at 136.098 kb on - strand, within Sama_0122 at 136.171 kb on + strand, within Sama_0122 at 136.171 kb on + strand, within Sama_0122 at 136.178 kb on + strand, within Sama_0122 at 136.392 kb on + strand, within Sama_0122 at 136.410 kb on + strand, within Sama_0122 at 136.411 kb on - strand, within Sama_0122 at 136.411 kb on - strand, within Sama_0122 at 136.475 kb on + strand, within Sama_0122 at 136.475 kb on + strand, within Sama_0122 at 136.475 kb on + strand, within Sama_0122 at 136.476 kb on - strand, within Sama_0122 at 136.499 kb on + strand, within Sama_0122 at 136.500 kb on - strand, within Sama_0122 at 136.558 kb on - strand, within Sama_0122 at 136.558 kb on - strand, within Sama_0122 at 136.601 kb on + strand at 136.601 kb on + strand at 136.602 kb on - strand at 136.602 kb on - strand at 136.602 kb on - strand at 136.602 kb on - strand at 136.666 kb on + strand at 136.666 kb on + strand at 136.666 kb on + strand at 136.667 kb on - strand at 136.667 kb on - strand at 136.667 kb on - strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.711 kb on - strand at 136.744 kb on + strand, within Sama_0123 at 136.744 kb on + strand, within Sama_0123 at 136.767 kb on + strand, within Sama_0123 at 136.768 kb on - strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.798 kb on - strand, within Sama_0123 at 136.798 kb on - strand, within Sama_0123 at 136.800 kb on + strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 134,430 - Sama_0120 0.48 +1.7 134,430 - Sama_0120 0.48 +1.3 134,504 + Sama_0120 0.52 -1.0 134,504 + Sama_0120 0.52 -1.2 134,504 + Sama_0120 0.52 +1.1 134,504 + Sama_0120 0.52 +0.4 134,504 + Sama_0120 0.52 -1.2 134,504 + Sama_0120 0.52 -0.3 134,505 - Sama_0120 0.52 -0.5 134,505 - Sama_0120 0.52 -0.0 134,505 - Sama_0120 0.52 +1.0 134,505 - Sama_0120 0.52 -0.6 134,505 - Sama_0120 0.52 +3.6 134,505 - Sama_0120 0.52 +0.4 134,505 - Sama_0120 0.52 +0.7 134,508 + Sama_0120 0.52 +0.2 134,509 - Sama_0120 0.52 +1.5 134,509 - Sama_0120 0.52 -0.4 134,510 - Sama_0120 0.52 -0.5 134,706 + Sama_0120 0.63 +0.1 134,754 - Sama_0120 0.66 -1.3 134,850 - Sama_0120 0.71 +0.3 134,850 - Sama_0120 0.71 +1.9 134,850 - Sama_0120 0.71 +0.8 134,850 - Sama_0120 0.71 +1.5 134,850 - Sama_0120 0.71 +2.0 134,850 - Sama_0120 0.71 +0.8 134,851 + Sama_0120 0.71 +1.9 134,851 + Sama_0120 0.71 +2.3 134,851 + Sama_0120 0.71 +0.2 134,851 + Sama_0120 0.71 +3.0 134,851 + Sama_0120 0.71 +0.4 134,851 + Sama_0120 0.71 +1.8 134,851 + Sama_0120 0.71 +2.7 134,851 + Sama_0120 0.71 +1.5 134,851 + Sama_0120 0.71 +1.8 134,851 + Sama_0120 0.71 +0.2 134,852 - Sama_0120 0.71 -0.2 134,852 - Sama_0120 0.71 +1.2 134,852 - Sama_0120 0.71 -0.4 134,852 - Sama_0120 0.71 +1.3 134,852 - Sama_0120 0.71 +1.3 134,852 - Sama_0120 0.71 -1.8 134,852 - Sama_0120 0.71 -1.8 134,852 - Sama_0120 0.71 -1.0 134,852 - Sama_0120 0.71 +1.1 134,852 - Sama_0120 0.71 +1.5 134,852 - Sama_0120 0.71 -1.0 134,852 - Sama_0120 0.71 +1.6 134,852 - Sama_0120 0.71 +0.7 134,852 - Sama_0120 0.71 -0.2 134,852 - Sama_0120 0.71 +2.0 134,852 - Sama_0120 0.71 +1.0 134,891 + Sama_0120 0.73 -1.3 134,916 + Sama_0120 0.75 +1.2 134,916 + Sama_0120 0.75 +1.4 134,916 + Sama_0120 0.75 -1.5 134,917 - Sama_0120 0.75 -2.5 134,972 + Sama_0120 0.78 +2.2 134,972 + Sama_0120 0.78 +2.1 134,972 + Sama_0120 0.78 +0.9 134,972 + Sama_0120 0.78 +2.4 134,973 - Sama_0120 0.78 +0.3 134,973 - Sama_0120 0.78 +0.4 134,973 - Sama_0120 0.78 +1.4 134,973 - Sama_0120 0.78 +1.0 135,006 + Sama_0120 0.80 +1.2 135,006 + Sama_0120 0.80 +2.1 135,006 + Sama_0120 0.80 +0.2 135,006 + Sama_0120 0.80 +0.6 135,007 - Sama_0120 0.80 +1.8 135,007 - Sama_0120 0.80 +1.4 135,029 + Sama_0120 0.81 +1.2 135,029 + Sama_0120 0.81 -0.8 135,030 - Sama_0120 0.81 -1.0 135,039 + Sama_0120 0.81 -1.4 135,039 + Sama_0120 0.81 -1.8 135,039 + Sama_0120 0.81 +0.6 135,040 - Sama_0120 0.82 -0.1 135,040 - Sama_0120 0.82 -2.2 135,050 + Sama_0120 0.82 -2.2 135,050 + Sama_0120 0.82 +0.8 135,051 - Sama_0120 0.82 +1.0 135,051 - Sama_0120 0.82 +3.3 135,051 - Sama_0120 0.82 +1.7 135,187 + Sama_0120 0.90 +1.8 135,187 + Sama_0120 0.90 +2.2 135,187 + Sama_0120 0.90 +1.0 135,187 + Sama_0120 0.90 -0.0 135,187 + Sama_0120 0.90 +2.6 135,187 + Sama_0120 0.90 +1.9 135,187 + Sama_0120 0.90 -0.3 135,187 + Sama_0120 0.90 +2.0 135,187 + Sama_0120 0.90 -0.8 135,188 - Sama_0120 0.90 +5.3 135,188 - Sama_0120 0.90 -0.8 135,188 - Sama_0120 0.90 -2.1 135,188 - Sama_0120 0.90 +1.8 135,188 - Sama_0120 0.90 -0.2 135,188 - Sama_0120 0.90 +0.5 135,188 - Sama_0120 0.90 -0.5 135,188 - Sama_0120 0.90 +0.6 135,188 - Sama_0120 0.90 -1.2 135,188 - Sama_0120 0.90 +1.7 135,207 - +0.7 135,252 + +2.5 135,316 + +2.1 135,316 + +0.1 135,316 + +1.0 135,317 - -0.5 135,317 - -1.7 135,334 - +1.0 135,409 + +2.3 135,410 - -1.3 135,410 - +0.4 135,410 - -0.8 135,418 + +1.9 135,418 + +0.2 135,418 + -0.5 135,418 + +1.1 135,418 + +2.4 135,419 - +2.2 135,419 - -2.2 135,419 - -1.4 135,419 - +0.2 135,442 + +1.6 135,442 + +1.1 135,443 - -1.3 135,443 - -2.5 135,443 - +2.0 135,498 - Sama_0121 0.19 -0.2 135,590 + Sama_0121 0.34 +2.0 135,591 - Sama_0121 0.34 +1.1 135,691 + Sama_0121 0.51 -1.0 135,691 + Sama_0121 0.51 +1.6 135,691 + Sama_0121 0.51 +1.2 135,691 + Sama_0121 0.51 -1.6 135,691 + Sama_0121 0.51 +2.7 135,734 - Sama_0121 0.59 -2.3 135,781 + Sama_0121 0.66 +3.5 135,781 + Sama_0121 0.66 +3.2 135,782 - Sama_0121 0.67 +3.4 135,804 - Sama_0121 0.70 +2.3 135,804 - Sama_0121 0.70 +0.4 135,865 - Sama_0121 0.81 +0.9 135,901 + Sama_0121 0.87 +4.2 135,978 + -0.2 135,978 + +1.5 135,978 + +1.8 135,979 - -3.0 135,979 - -0.8 135,979 - -0.4 135,979 - +0.4 135,979 - +0.1 135,979 - -0.4 135,979 - +1.2 135,979 - +0.7 135,979 - +1.7 135,979 - -0.8 135,979 - -0.6 135,980 + +2.3 136,045 + Sama_0122 0.12 +0.7 136,045 + Sama_0122 0.12 +0.8 136,046 - Sama_0122 0.12 -0.2 136,097 + Sama_0122 0.19 +0.5 136,098 - Sama_0122 0.20 +3.4 136,098 - Sama_0122 0.20 -0.1 136,171 + Sama_0122 0.30 -1.1 136,171 + Sama_0122 0.30 +1.1 136,178 + Sama_0122 0.31 +1.4 136,392 + Sama_0122 0.62 -1.0 136,410 + Sama_0122 0.65 -0.3 136,411 - Sama_0122 0.65 -1.0 136,411 - Sama_0122 0.65 -0.8 136,475 + Sama_0122 0.74 -0.8 136,475 + Sama_0122 0.74 -3.8 136,475 + Sama_0122 0.74 -0.2 136,476 - Sama_0122 0.74 +1.8 136,499 + Sama_0122 0.77 +1.9 136,500 - Sama_0122 0.78 -1.0 136,558 - Sama_0122 0.86 +0.8 136,558 - Sama_0122 0.86 -1.9 136,601 + -0.8 136,601 + +2.5 136,602 - -2.6 136,602 - +1.6 136,602 - +0.2 136,602 - -4.0 136,666 + -1.9 136,666 + +0.8 136,666 + -0.0 136,667 - +1.2 136,667 - -0.3 136,667 - -2.8 136,707 + -1.9 136,707 + -1.8 136,707 + +2.1 136,707 + +1.1 136,707 + -2.3 136,707 + +0.8 136,708 - -0.2 136,708 - -1.5 136,708 - -2.1 136,708 - -0.6 136,708 - -0.3 136,710 + -0.1 136,710 + +0.3 136,710 + -1.7 136,710 + +0.1 136,710 + -1.6 136,710 + -1.6 136,711 - -0.4 136,744 + Sama_0123 0.13 -1.2 136,744 + Sama_0123 0.13 -0.3 136,767 + Sama_0123 0.16 -0.8 136,768 - Sama_0123 0.16 -0.1 136,797 + Sama_0123 0.20 -0.8 136,797 + Sama_0123 0.20 -0.5 136,797 + Sama_0123 0.20 +0.9 136,797 + Sama_0123 0.20 -0.1 136,798 - Sama_0123 0.20 -0.2 136,798 - Sama_0123 0.20 +1.9 136,800 + Sama_0123 0.21 -0.7 136,801 - Sama_0123 0.21 -2.7 136,801 - Sama_0123 0.21 -1.3 136,801 - Sama_0123 0.21 -2.8 136,801 - Sama_0123 0.21 -0.4 136,811 + Sama_0123 0.22 +1.2 136,811 + Sama_0123 0.22 -0.6 136,811 + Sama_0123 0.22 -0.4 136,811 + Sama_0123 0.22 -1.0 136,811 + Sama_0123 0.22 -3.2 136,812 - Sama_0123 0.22 -0.5 136,812 - Sama_0123 0.22 -0.3 136,812 - Sama_0123 0.22 -2.3 136,812 - Sama_0123 0.22 -1.2 136,812 - Sama_0123 0.22 +2.4 136,812 - Sama_0123 0.22 +2.1 136,924 + Sama_0123 0.38 +0.7 136,924 + Sama_0123 0.38 -0.2 136,924 + Sama_0123 0.38 +0.1 136,924 + Sama_0123 0.38 +1.0 136,924 + Sama_0123 0.38 -0.5 136,925 - Sama_0123 0.38 -2.2 136,925 - Sama_0123 0.38 -0.6 136,925 - Sama_0123 0.38 -0.5 136,925 - Sama_0123 0.38 +0.7 136,925 - Sama_0123 0.38 -0.5 136,925 - Sama_0123 0.38 +0.2
Or see this region's nucleotide sequence