Strain Fitness in Shewanella amazonensis SB2B around Sama_0099

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
111,311	+		Sama_0098	0.40	+2.1
111,311	+		Sama_0098	0.40	-0.2
111,311	+		Sama_0098	0.40	+2.2
111,311	+		Sama_0098	0.40	-0.9
111,312	-		Sama_0098	0.40	+2.7
111,312	-		Sama_0098	0.40	+1.8
111,312	-		Sama_0098	0.40	-1.5
111,349	+		Sama_0098	0.43	+1.2
111,349	+		Sama_0098	0.43	+1.5
111,350	-		Sama_0098	0.43	+1.4
111,359	+		Sama_0098	0.44	+4.1
111,359	+		Sama_0098	0.44	+0.1
111,359	+		Sama_0098	0.44	-2.1
111,360	-		Sama_0098	0.44	-1.3
111,360	-		Sama_0098	0.44	-0.6
111,360	-		Sama_0098	0.44	+2.4
111,360	-		Sama_0098	0.44	+1.9
111,380	+		Sama_0098	0.45	+1.8
111,405	+		Sama_0098	0.47	-0.8
111,406	-		Sama_0098	0.48	+1.5
111,406	-		Sama_0098	0.48	-1.4
111,425	-		Sama_0098	0.49	-1.2
111,453	+		Sama_0098	0.52	+1.0
111,453	+		Sama_0098	0.52	+0.4
111,454	-		Sama_0098	0.52	-0.1
111,454	-		Sama_0098	0.52	+1.4
111,454	-		Sama_0098	0.52	+0.2
111,454	-		Sama_0098	0.52	+1.4
111,465	+		Sama_0098	0.53	+1.2
111,465	+		Sama_0098	0.53	+0.2
111,465	+		Sama_0098	0.53	+2.4
111,466	-		Sama_0098	0.53	+1.6
111,466	-		Sama_0098	0.53	-2.3
111,466	-		Sama_0098	0.53	-1.6
111,466	-		Sama_0098	0.53	-0.8
111,466	-		Sama_0098	0.53	+1.2
111,506	+		Sama_0098	0.56	-0.2
111,506	+		Sama_0098	0.56	+0.6
111,506	+		Sama_0098	0.56	+2.4
111,507	-		Sama_0098	0.56	+3.3
111,536	+		Sama_0098	0.58	+0.1
111,536	+		Sama_0098	0.58	+0.5
111,536	+		Sama_0098	0.58	+0.1
111,537	-		Sama_0098	0.59	-0.8
111,537	-		Sama_0098	0.59	-1.2
111,537	-		Sama_0098	0.59	-0.5
111,537	-		Sama_0098	0.59	-0.3
111,560	+		Sama_0098	0.60	-1.0
111,560	+		Sama_0098	0.60	+0.8
111,560	+		Sama_0098	0.60	+2.4
111,561	-		Sama_0098	0.61	-1.3
111,561	-		Sama_0098	0.61	-1.5
111,593	+		Sama_0098	0.63	+1.9
111,594	-		Sama_0098	0.63	+1.4
111,594	-		Sama_0098	0.63	+1.6
111,617	+		Sama_0098	0.65	+2.2
111,617	+		Sama_0098	0.65	+0.1
111,618	-		Sama_0098	0.65	-1.0
111,618	-		Sama_0098	0.65	-0.2
111,618	-		Sama_0098	0.65	-0.2
111,618	-		Sama_0098	0.65	+0.2
111,618	-		Sama_0098	0.65	+1.1
111,618	-		Sama_0098	0.65	+1.2
111,709	+		Sama_0098	0.73	-1.0
111,709	+		Sama_0098	0.73	+1.8
111,719	+		Sama_0098	0.74	+0.5
111,720	-		Sama_0098	0.74	+1.8
111,720	-		Sama_0098	0.74	+0.1
111,720	-		Sama_0098	0.74	-0.2
111,720	-		Sama_0098	0.74	-1.3
111,720	-		Sama_0098	0.74	-0.2
111,720	-		Sama_0098	0.74	-0.4
111,788	+		Sama_0098	0.80	+0.7
111,788	+		Sama_0098	0.80	+4.5
111,789	-		Sama_0098	0.80	-0.6
111,807	-		Sama_0098	0.81	-0.4
111,807	-		Sama_0098	0.81	+0.7
111,877	+		Sama_0098	0.87	+0.2
111,877	+		Sama_0098	0.87	-1.3
111,877	+		Sama_0098	0.87	-0.2
111,877	+		Sama_0098	0.87	+0.9
111,878	-		Sama_0098	0.87	+1.7
111,878	-		Sama_0098	0.87	-0.3
111,878	-		Sama_0098	0.87	+2.4
111,878	-		Sama_0098	0.87	+1.0
111,897	-		Sama_0098	0.89	+4.0
111,897	-		Sama_0098	0.89	-0.8
111,897	-		Sama_0098	0.89	+1.6
111,920	+				+1.7
111,920	+				+2.8
111,920	+				-0.5
111,920	+				-0.3
111,920	+				+0.1
111,920	+				+1.1
111,921	-				-2.3
111,981	-				-0.5
111,981	-				+3.6
112,012	+				+0.2
112,012	+				-0.5
112,012	+				-2.3
112,012	+				+0.6
112,013	-				+2.8
112,043	+				+1.2
112,043	+				+0.4
112,043	+				+0.8
112,044	-				-0.5
112,047	+				-2.2
112,047	+				-1.8
112,048	-				+0.2
112,048	-				+0.9
112,053	+				-0.8
112,054	-				-0.7
112,054	-				-2.3
112,054	-				+0.9
112,083	+				+1.0
112,083	+				+0.9
112,083	+				+1.9
112,083	+				-1.8
112,084	-				+1.0
112,084	-				+0.6
112,096	-				-2.9
112,096	-				+1.8
112,111	+				-1.3
112,112	-				-2.2
112,112	-				+0.1
112,112	-				+0.8
112,136	+				-1.3
112,147	-				+0.1
112,222	+				+1.3
112,222	+				-3.4
112,222	+				+1.6
112,223	-				-0.5
112,288	+				-3.2
112,288	+				-1.6
112,289	-				-1.8
112,289	-				-2.2
112,357	+		Sama_0099	0.11	-0.5
112,357	+		Sama_0099	0.11	-3.3
112,358	-		Sama_0099	0.11	-1.5
112,358	-		Sama_0099	0.11	-1.3
112,395	+		Sama_0099	0.17	-1.5
112,396	+		Sama_0099	0.17	+0.7
112,397	-		Sama_0099	0.17	-1.8
112,444	+		Sama_0099	0.24	-2.5
112,444	+		Sama_0099	0.24	-0.7
112,444	+		Sama_0099	0.24	-1.9
112,445	-		Sama_0099	0.24	-1.1
112,464	-		Sama_0099	0.27	-2.8
112,516	-		Sama_0099	0.36	-1.5
112,516	-		Sama_0099	0.36	-1.5
112,520	+		Sama_0099	0.36	-0.8
112,520	+		Sama_0099	0.36	-1.1
112,521	-		Sama_0099	0.36	-2.8
112,521	-		Sama_0099	0.36	-1.0
112,578	+		Sama_0099	0.45	-0.1
112,578	+		Sama_0099	0.45	-1.6
112,579	-		Sama_0099	0.45	-2.2
112,579	-		Sama_0099	0.45	-0.5
112,589	-		Sama_0099	0.47	-1.8
112,639	+		Sama_0099	0.55	-1.2
112,639	+		Sama_0099	0.55	-2.1
112,639	+		Sama_0099	0.55	+1.1
112,640	-		Sama_0099	0.55	-1.9
112,640	-		Sama_0099	0.55	-3.1
112,640	-		Sama_0099	0.55	+0.8
112,640	-		Sama_0099	0.55	-1.5
112,640	-		Sama_0099	0.55	-1.3
112,640	-		Sama_0099	0.55	-1.4
112,643	+		Sama_0099	0.56	-1.8
112,643	+		Sama_0099	0.56	-2.2
112,643	+		Sama_0099	0.56	-0.8
112,643	+		Sama_0099	0.56	-2.3
112,643	+		Sama_0099	0.56	-3.2
112,643	+		Sama_0099	0.56	-1.0
112,643	+		Sama_0099	0.56	+0.5
112,643	+		Sama_0099	0.56	-1.1
112,644	-		Sama_0099	0.56	-1.3
112,644	-		Sama_0099	0.56	-1.5
112,644	-		Sama_0099	0.56	-2.3
112,644	-		Sama_0099	0.56	+0.8
112,644	-		Sama_0099	0.56	-1.3
112,644	-		Sama_0099	0.56	-1.5
112,666	+		Sama_0099	0.59	-2.1
112,666	+		Sama_0099	0.59	-1.0
112,666	+		Sama_0099	0.59	+0.2
112,666	+		Sama_0099	0.59	-2.3
112,666	+		Sama_0099	0.59	+0.9
112,666	+		Sama_0099	0.59	+1.8
112,666	+		Sama_0099	0.59	-1.9
112,666	+		Sama_0099	0.59	-1.9
112,667	-		Sama_0099	0.59	-1.3
112,667	-		Sama_0099	0.59	-0.5
112,667	-		Sama_0099	0.59	-0.8
112,667	-		Sama_0099	0.59	-0.2
112,667	-		Sama_0099	0.59	+0.2
112,667	-		Sama_0099	0.59	-0.4
112,667	-		Sama_0099	0.59	-2.4
112,667	-		Sama_0099	0.59	+1.5
112,684	+		Sama_0099	0.62	-2.9
112,684	+		Sama_0099	0.62	-1.4
112,684	+		Sama_0099	0.62	-1.4
112,684	+		Sama_0099	0.62	-0.8
112,685	-		Sama_0099	0.62	-3.0
112,685	-		Sama_0099	0.62	-1.8
112,685	-		Sama_0099	0.62	-1.6
112,724	-		Sama_0099	0.68	-0.5
112,730	+		Sama_0099	0.69	-2.3
112,730	+		Sama_0099	0.69	-2.6
112,730	+		Sama_0099	0.69	-2.3
112,730	+		Sama_0099	0.69	+0.2
112,731	-		Sama_0099	0.69	-1.0
112,731	-		Sama_0099	0.69	-1.3
112,731	-		Sama_0099	0.69	-0.5
112,731	-		Sama_0099	0.69	-2.8
112,778	+		Sama_0099	0.77	-2.6
112,779	-		Sama_0099	0.77	-1.6
112,804	+		Sama_0099	0.81	-2.8
112,804	+		Sama_0099	0.81	-1.8
112,804	+		Sama_0099	0.81	-0.2
112,804	+		Sama_0099	0.81	-0.0
112,804	+		Sama_0099	0.81	-0.6
112,805	-		Sama_0099	0.81	+0.4
112,805	-		Sama_0099	0.81	-3.0
112,805	-		Sama_0099	0.81	-3.1
112,805	-		Sama_0099	0.81	-3.1
112,807	+		Sama_0099	0.81	-2.2
112,807	+		Sama_0099	0.81	-1.0
112,807	+		Sama_0099	0.81	-1.2
112,808	-		Sama_0099	0.81	-1.3
112,808	-		Sama_0099	0.81	+0.2
112,826	+		Sama_0099	0.84	-1.2
112,844	+		Sama_0099	0.87	-2.7
112,844	+		Sama_0099	0.87	-1.0
112,845	-		Sama_0099	0.87	-2.4
112,856	+		Sama_0099	0.89	-3.1
112,856	+		Sama_0099	0.89	-2.3
112,856	+		Sama_0099	0.89	-1.0
112,856	+		Sama_0099	0.89	-1.6
112,856	+		Sama_0099	0.89	-1.5
112,857	-		Sama_0099	0.89	-1.6
112,880	+				+2.9
112,930	-				-0.8
112,930	-				-2.4
112,930	-				-0.8
112,940	+				-1.3
112,940	+				-2.2
112,940	+				-0.3
112,940	+				-1.0
112,940	+				-3.1
112,940	+				-0.0
112,940	+				-2.0
112,940	+				-2.0
112,940	+				-3.3
112,940	+				-1.8
112,941	-				+2.0
112,964	+				-1.5
112,979	+				-1.0
112,979	+				-1.3
112,979	+				-3.0
112,979	+				-1.2
112,997	+				-2.3
112,997	+				+1.3
112,997	+				-1.3
112,997	+				-2.0
112,998	-				-1.1
112,998	-				+0.2
112,998	-				+1.1
113,002	+				-2.9
113,002	+				+0.7
113,002	+				+0.0