Strain Fitness in Shewanella amazonensis SB2B around Sama_0085

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
94,960	-		Sama_0084	0.61	+0.1
94,973	+		Sama_0084	0.62	-1.5
94,973	+		Sama_0084	0.62	-2.8
94,973	+		Sama_0084	0.62	+1.0
94,973	+		Sama_0084	0.62	+0.5
94,973	+		Sama_0084	0.62	+2.0
94,973	+		Sama_0084	0.62	-0.9
94,973	+		Sama_0084	0.62	+0.8
94,974	-		Sama_0084	0.62	+1.1
94,974	-		Sama_0084	0.62	+0.4
94,998	+		Sama_0084	0.63	+1.0
94,998	+		Sama_0084	0.63	+1.1
94,998	+		Sama_0084	0.63	-0.1
94,998	+		Sama_0084	0.63	+0.8
94,999	-		Sama_0084	0.63	-0.7
94,999	-		Sama_0084	0.63	-1.2
94,999	-		Sama_0084	0.63	-1.7
94,999	-		Sama_0084	0.63	-0.3
95,052	+		Sama_0084	0.66	-0.8
95,052	+		Sama_0084	0.66	-1.2
95,053	-		Sama_0084	0.66	-0.7
95,053	-		Sama_0084	0.66	-1.3
95,053	-		Sama_0084	0.66	+1.2
95,053	-		Sama_0084	0.66	+0.5
95,053	-		Sama_0084	0.66	+1.1
95,099	+		Sama_0084	0.69	-0.2
95,100	-		Sama_0084	0.69	-0.9
95,100	-		Sama_0084	0.69	-1.0
95,129	+		Sama_0084	0.70	-0.3
95,129	+		Sama_0084	0.70	-0.9
95,129	+		Sama_0084	0.70	+0.2
95,129	+		Sama_0084	0.70	-0.0
95,129	+		Sama_0084	0.70	+0.7
95,130	-		Sama_0084	0.70	-0.5
95,130	-		Sama_0084	0.70	+1.0
95,130	-		Sama_0084	0.70	+0.4
95,138	+		Sama_0084	0.71	+0.4
95,139	-		Sama_0084	0.71	+1.2
95,139	-		Sama_0084	0.71	-2.1
95,183	+		Sama_0084	0.73	+0.8
95,183	+		Sama_0084	0.73	-2.1
95,183	+		Sama_0084	0.73	+0.8
95,183	+		Sama_0084	0.73	-0.3
95,183	+		Sama_0084	0.73	-1.3
95,184	-		Sama_0084	0.73	-1.9
95,184	-		Sama_0084	0.73	+0.3
95,184	-		Sama_0084	0.73	-0.8
95,184	-		Sama_0084	0.73	-1.3
95,184	-		Sama_0084	0.73	-0.1
95,219	+		Sama_0084	0.75	-0.8
95,219	+		Sama_0084	0.75	-0.5
95,219	+		Sama_0084	0.75	+1.3
95,219	+		Sama_0084	0.75	-1.9
95,219	+		Sama_0084	0.75	+0.8
95,219	+		Sama_0084	0.75	-0.7
95,219	+		Sama_0084	0.75	+0.7
95,219	+		Sama_0084	0.75	-0.5
95,219	+		Sama_0084	0.75	-1.8
95,220	-		Sama_0084	0.75	-0.7
95,220	-		Sama_0084	0.75	+0.6
95,220	-		Sama_0084	0.75	-1.0
95,220	-		Sama_0084	0.75	+0.8
95,220	-		Sama_0084	0.75	+0.9
95,220	-		Sama_0084	0.75	+0.7
95,220	-		Sama_0084	0.75	-0.1
95,220	-		Sama_0084	0.75	+2.2
95,220	-		Sama_0084	0.75	+1.0
95,220	-		Sama_0084	0.75	+0.7
95,220	-		Sama_0084	0.75	+0.5
95,230	-		Sama_0084	0.76	-1.6
95,237	+		Sama_0084	0.76	+1.2
95,237	+		Sama_0084	0.76	+2.0
95,237	+		Sama_0084	0.76	+0.5
95,237	+		Sama_0084	0.76	+0.3
95,237	+		Sama_0084	0.76	+0.1
95,237	+		Sama_0084	0.76	-0.3
95,237	+		Sama_0084	0.76	+1.3
95,237	+		Sama_0084	0.76	-1.8
95,237	+		Sama_0084	0.76	-0.0
95,237	+		Sama_0084	0.76	-2.5
95,237	+		Sama_0084	0.76	-0.3
95,238	-		Sama_0084	0.76	-1.8
95,238	-		Sama_0084	0.76	+0.7
95,238	-		Sama_0084	0.76	-1.3
95,238	-		Sama_0084	0.76	-0.7
95,238	-		Sama_0084	0.76	-0.3
95,238	-		Sama_0084	0.76	-1.2
95,238	-		Sama_0084	0.76	+0.2
95,238	-		Sama_0084	0.76	+0.2
95,398	-		Sama_0084	0.85	-0.1
95,398	+		Sama_0084	0.85	-0.0
95,412	+		Sama_0084	0.86	-2.7
95,412	+		Sama_0084	0.86	-0.6
95,412	+		Sama_0084	0.86	+0.8
95,412	+		Sama_0084	0.86	-1.9
95,426	+		Sama_0084	0.86	-1.5
95,470	-		Sama_0084	0.89	+0.6
95,475	+		Sama_0084	0.89	+0.1
95,475	+		Sama_0084	0.89	-2.3
95,476	-		Sama_0084	0.89	-1.2
95,493	+		Sama_0084	0.90	-1.5
95,576	+				-1.2
95,576	+				-0.1
95,576	+				+0.0
95,576	+				+1.1
95,576	+				-0.6
95,576	+				+0.2
95,576	+				-1.0
95,576	+				+0.3
95,577	-				-0.8
95,577	-				+0.8
95,577	-				+0.6
95,577	-				-1.3
95,577	-				-2.5
95,577	-				-0.9
95,577	-				-0.3
95,582	+				-0.4
95,582	+				+0.9
95,583	-				-1.8
95,583	-				+0.8
95,583	-				-3.4
95,583	-				+1.8
95,583	-				-0.3
95,583	-				-2.2
95,589	-				+0.6
95,589	-				-1.0
95,719	+				+0.6
95,719	+				-1.4
95,719	+				-0.5
95,720	-				+2.0
95,762	+				-0.1
95,763	-				+0.1
95,769	+				+0.7
95,769	+				-2.8
95,769	+				+0.6
95,770	-				+0.8
95,770	-				+0.7
95,812	+				-0.6
95,812	+				+1.2
95,822	+				-1.3
95,822	+				-2.1
95,822	+				-0.7
95,823	-				+2.0
95,823	-				+0.3
95,823	-				-1.8
95,842	-				-1.2
95,870	+				-0.5
95,870	+				-0.8
95,871	-				-1.2
95,871	-				+0.3
95,871	-				+0.8
95,905	+				-0.6
95,905	+				+1.2
95,905	+				-2.3
95,906	-				-1.4
95,909	+				-1.2
95,909	+				-1.6
95,909	+				+0.2
95,909	+				+0.2
95,909	+				-0.8
95,909	+				-0.5
95,909	+				+0.8
95,909	+				+1.1
95,909	+				+0.7
95,910	-				-1.5
95,910	-				-3.0
95,910	-				-1.6
95,910	-				-1.1
95,910	-				-1.2
95,910	-				+1.0
95,918	+				-2.2
96,189	+		Sama_0085	0.28	-1.1
96,189	+		Sama_0085	0.28	-1.8
96,213	+		Sama_0085	0.30	-1.0
96,213	+		Sama_0085	0.30	-2.6
96,213	+		Sama_0085	0.30	-3.0
96,213	+		Sama_0085	0.30	-1.5
96,213	+		Sama_0085	0.30	-1.4
96,213	+		Sama_0085	0.30	-2.0
96,214	-		Sama_0085	0.30	-0.9
96,214	-		Sama_0085	0.30	-0.8
96,214	-		Sama_0085	0.30	-2.0
96,216	+		Sama_0085	0.31	-2.5
96,216	+		Sama_0085	0.31	-0.9
96,216	+		Sama_0085	0.31	+0.8
96,216	+		Sama_0085	0.31	-2.7
96,216	+		Sama_0085	0.31	-0.6
96,216	+		Sama_0085	0.31	-1.0
96,216	+		Sama_0085	0.31	-2.7
96,217	-		Sama_0085	0.31	-1.4
96,217	-		Sama_0085	0.31	-0.9
96,217	-		Sama_0085	0.31	-1.3
96,217	-		Sama_0085	0.31	+0.1
96,217	-		Sama_0085	0.31	-1.0
96,217	-		Sama_0085	0.31	-2.4
96,217	-		Sama_0085	0.31	-1.5
96,315	-		Sama_0085	0.41	-1.0
96,491	+		Sama_0085	0.58	-2.8
96,492	-		Sama_0085	0.58	-2.1
96,494	+		Sama_0085	0.58	+0.0
96,494	+		Sama_0085	0.58	-0.6
96,494	+		Sama_0085	0.58	-0.7
96,494	+		Sama_0085	0.58	-0.2
96,494	+		Sama_0085	0.58	-0.6
96,494	+		Sama_0085	0.58	-1.8
96,495	-		Sama_0085	0.59	-1.1
96,495	-		Sama_0085	0.59	-0.8
96,495	-		Sama_0085	0.59	-2.0
96,495	-		Sama_0085	0.59	-1.5
96,499	+		Sama_0085	0.59	-0.6
96,499	+		Sama_0085	0.59	-0.7
96,499	+		Sama_0085	0.59	-2.3
96,499	+		Sama_0085	0.59	+0.6
96,499	+		Sama_0085	0.59	-3.6
96,500	-		Sama_0085	0.59	-2.1
96,500	-		Sama_0085	0.59	-0.6
96,508	-		Sama_0085	0.60	-0.9
96,566	+		Sama_0085	0.66	-0.8
96,612	+		Sama_0085	0.70	-1.6
96,612	+		Sama_0085	0.70	+0.0
96,656	+		Sama_0085	0.75	-1.3
96,656	+		Sama_0085	0.75	-1.8
96,656	+		Sama_0085	0.75	-0.2
96,656	+		Sama_0085	0.75	-1.1
96,740	+		Sama_0085	0.83	-2.0
96,764	+		Sama_0085	0.85	-1.6
96,765	-		Sama_0085	0.86	-1.7
96,863	+				+0.8
96,863	+				-1.9
96,863	+				-1.0
96,863	+				+0.3
96,863	+				-0.9
96,864	-				-2.0
96,892	-				-0.7
96,923	+				-1.5
96,923	+				-0.5
96,923	+				+0.8
96,924	-				+1.0
96,924	-				-2.5
96,924	-				+0.7
96,924	-				+1.2
96,924	-				-1.5
96,924	-				+1.2
96,928	-				-1.2
96,996	+				+0.4
96,996	+				-0.1
96,996	+				-0.5
97,041	+				+1.8
97,041	+				-1.3
97,042	-				+0.2
97,042	-				-1.0
97,042	-				+2.8
97,042	-				-1.9
97,057	+				-0.2
97,057	+				-1.3
97,057	+				+0.6
97,057	+				-1.6
97,057	+				-0.2
97,057	+				-1.2
97,057	+				-1.2
97,057	+				-0.1
97,058	-				+0.2
97,058	-				-1.2
97,058	-				-1.3
97,063	+				-0.5
97,063	+				-2.3
97,063	+				+1.6
97,063	+				-1.3
97,064	-				+2.1
97,064	-				-0.5
97,064	-				+0.8
97,064	-				+1.0
97,064	-				+1.5
97,064	-				+1.4
97,064	-				+0.5
97,064	-				-0.8
97,064	-				-2.7
97,064	-				-2.1
97,066	+				-1.6
97,066	+				+3.4
97,067	-				-0.2
97,067	-				+1.2
97,067	-				-0.5
97,102	+				+0.2
97,102	+				-1.8
97,102	+				+1.2
97,102	+				+0.8
97,103	-				-0.5
97,103	-				-0.8
97,173	+		Sama_0086	0.13	-0.8
97,173	+		Sama_0086	0.13	-0.2
97,174	-		Sama_0086	0.13	+0.8
97,207	+		Sama_0086	0.16	+2.8
97,208	-		Sama_0086	0.16	-1.0
97,216	+		Sama_0086	0.16	+1.1
97,217	-		Sama_0086	0.17	+0.2
97,319	+		Sama_0086	0.24	+1.0
97,320	-		Sama_0086	0.24	+1.0
97,320	-		Sama_0086	0.24	-0.8
97,320	-		Sama_0086	0.24	-1.0
97,329	+		Sama_0086	0.25	-0.3
97,329	+		Sama_0086	0.25	-0.4
97,330	-		Sama_0086	0.25	+2.4
97,330	-		Sama_0086	0.25	+1.8
97,330	-		Sama_0086	0.25	+2.4
97,330	-		Sama_0086	0.25	-1.2
97,330	-		Sama_0086	0.25	+1.6
97,330	-		Sama_0086	0.25	+1.2
97,330	-		Sama_0086	0.25	-1.2
97,330	-		Sama_0086	0.25	-2.5
97,332	+		Sama_0086	0.25	-0.0
97,332	+		Sama_0086	0.25	+0.2
97,362	+		Sama_0086	0.27	+1.0
97,363	-		Sama_0086	0.27	-0.2
97,391	+		Sama_0086	0.30	-0.9
97,392	-		Sama_0086	0.30	-0.6
97,426	+		Sama_0086	0.32	-0.2
97,427	-		Sama_0086	0.32	+1.2
97,427	-		Sama_0086	0.32	+0.2
97,429	+		Sama_0086	0.32	+0.2
97,429	+		Sama_0086	0.32	+0.8
97,429	+		Sama_0086	0.32	-0.7
97,429	+		Sama_0086	0.32	-1.9
97,429	+		Sama_0086	0.32	-0.4
97,429	+		Sama_0086	0.32	-0.5
97,429	+		Sama_0086	0.32	+1.2
97,429	+		Sama_0086	0.32	-2.2
97,430	-		Sama_0086	0.32	+1.2
97,430	-		Sama_0086	0.32	-1.9
97,430	-		Sama_0086	0.32	-1.2
97,430	-		Sama_0086	0.32	-1.7
97,430	-		Sama_0086	0.32	-2.9
97,430	-		Sama_0086	0.32	-1.3
97,430	-		Sama_0086	0.32	+2.4
97,430	-		Sama_0086	0.32	+0.8
97,431	+		Sama_0086	0.33	+1.0
97,431	+		Sama_0086	0.33	+2.4
97,431	+		Sama_0086	0.33	+0.2
97,431	+		Sama_0086	0.33	+3.3
97,431	+		Sama_0086	0.33	-1.8
97,431	+		Sama_0086	0.33	-0.5
97,432	-		Sama_0086	0.33	-2.0
97,432	-		Sama_0086	0.33	-1.0
97,432	-		Sama_0086	0.33	+0.8
97,432	-		Sama_0086	0.33	+2.0
97,432	-		Sama_0086	0.33	+0.8
97,432	-		Sama_0086	0.33	+1.7
97,432	-		Sama_0086	0.33	+1.4
97,432	-		Sama_0086	0.33	-1.5
97,518	+		Sama_0086	0.39	+0.4
97,518	+		Sama_0086	0.39	-0.5
97,518	+		Sama_0086	0.39	-1.6
97,518	+		Sama_0086	0.39	-1.3
97,518	+		Sama_0086	0.39	-1.2
97,518	+		Sama_0086	0.39	-1.3
97,518	+		Sama_0086	0.39	-0.2
97,518	+		Sama_0086	0.39	-0.2
97,518	+		Sama_0086	0.39	-1.2
97,518	+		Sama_0086	0.39	+0.0
97,519	-		Sama_0086	0.39	-0.2
97,519	-		Sama_0086	0.39	-0.5
97,519	-		Sama_0086	0.39	+1.2
97,519	-		Sama_0086	0.39	-0.5
97,644	+		Sama_0086	0.48	-1.3
97,644	+		Sama_0086	0.48	+2.7
97,645	-		Sama_0086	0.48	-0.2
97,823	+		Sama_0086	0.62	-0.1
97,864	+		Sama_0086	0.65	-0.3
97,864	+		Sama_0086	0.65	-0.1