Strain Fitness in Shewanella amazonensis SB2B around Sama_0062

Experiment: Motility assay, center cut sample 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0060 and Sama_0061 are separated by 273 nucleotidesSama_0061 and Sama_0062 are separated by 219 nucleotidesSama_0062 and gpsA are separated by 6 nucleotides Sama_0060: Sama_0060 - phosphoglyceromutase (RefSeq), at 65,149 to 66,690 _0060 Sama_0061: Sama_0061 - rhodanese-like protein (RefSeq), at 66,964 to 67,356 _0061 Sama_0062: Sama_0062 - preprotein translocase subunit SecB (RefSeq), at 67,576 to 68,055 _0062 Sama_0063: gpsA - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq), at 68,062 to 69,081 gpsA Position (kb) 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 66.715 kb on - strandat 66.752 kb on + strandat 66.752 kb on + strandat 66.752 kb on + strandat 66.752 kb on + strandat 66.752 kb on + strandat 66.753 kb on - strandat 66.753 kb on - strandat 66.755 kb on + strandat 66.755 kb on + strandat 66.756 kb on - strandat 66.756 kb on - strandat 66.758 kb on + strandat 66.758 kb on + strandat 66.759 kb on - strandat 66.759 kb on - strandat 66.832 kb on + strandat 66.833 kb on - strandat 66.833 kb on - strandat 66.833 kb on - strandat 66.876 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.880 kb on + strandat 66.881 kb on - strandat 66.881 kb on - strandat 66.881 kb on - strandat 66.881 kb on - strandat 66.881 kb on - strandat 66.881 kb on - strandat 66.882 kb on + strandat 66.882 kb on + strandat 66.883 kb on - strandat 66.883 kb on - strandat 66.883 kb on - strandat 66.907 kb on + strandat 66.908 kb on - strandat 66.913 kb on + strandat 66.914 kb on - strandat 66.914 kb on - strandat 66.924 kb on + strandat 66.924 kb on + strandat 66.937 kb on + strandat 66.937 kb on + strandat 66.937 kb on + strandat 66.938 kb on - strandat 66.938 kb on - strandat 67.008 kb on + strand, within Sama_0061at 67.008 kb on + strand, within Sama_0061at 67.008 kb on + strand, within Sama_0061at 67.009 kb on - strand, within Sama_0061at 67.009 kb on - strand, within Sama_0061at 67.017 kb on + strand, within Sama_0061at 67.017 kb on + strand, within Sama_0061at 67.023 kb on + strand, within Sama_0061at 67.024 kb on - strand, within Sama_0061at 67.024 kb on - strand, within Sama_0061at 67.024 kb on - strand, within Sama_0061at 67.024 kb on - strand, within Sama_0061at 67.097 kb on + strand, within Sama_0061at 67.098 kb on - strand, within Sama_0061at 67.098 kb on - strand, within Sama_0061at 67.111 kb on - strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.218 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.220 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.292 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.294 kb on + strand, within Sama_0061at 67.311 kb on + strand, within Sama_0061at 67.354 kb on + strandat 67.408 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2
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66,715 - +0.6
66,752 + -0.5
66,752 + -1.0
66,752 + -2.7
66,752 + +0.4
66,752 + +0.1
66,753 - +4.5
66,753 - -0.8
66,755 + -2.0
66,755 + +0.2
66,756 - -2.6
66,756 - -0.5
66,758 + -1.0
66,758 + -1.6
66,759 - -0.6
66,759 - +1.1
66,832 + +1.1
66,833 - +3.9
66,833 - +0.2
66,833 - -2.1
66,876 + -0.6
66,880 + -2.7
66,880 + -1.2
66,880 + -0.5
66,880 + +1.3
66,880 + -0.8
66,880 + +0.8
66,880 + +2.2
66,880 + +1.0
66,880 + -2.1
66,881 - +0.6
66,881 - +0.4
66,881 - +1.2
66,881 - +3.4
66,881 - -1.3
66,881 - -0.8
66,882 + +2.1
66,882 + +1.0
66,883 - +0.4
66,883 - +0.3
66,883 - -2.9
66,907 + -0.9
66,908 - -0.9
66,913 + +0.8
66,914 - -0.3
66,914 - +0.3
66,924 + -2.0
66,924 + +0.1
66,937 + +0.9
66,937 + -1.3
66,937 + -0.2
66,938 - +0.3
66,938 - -0.8
67,008 + Sama_0061 0.11 -0.0
67,008 + Sama_0061 0.11 +0.6
67,008 + Sama_0061 0.11 -1.3
67,009 - Sama_0061 0.11 +1.2
67,009 - Sama_0061 0.11 +2.6
67,017 + Sama_0061 0.13 -1.6
67,017 + Sama_0061 0.13 +0.5
67,023 + Sama_0061 0.15 +1.3
67,024 - Sama_0061 0.15 +1.1
67,024 - Sama_0061 0.15 +0.4
67,024 - Sama_0061 0.15 -0.3
67,024 - Sama_0061 0.15 -1.1
67,097 + Sama_0061 0.34 -0.3
67,098 - Sama_0061 0.34 -2.8
67,098 - Sama_0061 0.34 -0.3
67,111 - Sama_0061 0.37 -2.2
67,218 + Sama_0061 0.65 -1.8
67,218 + Sama_0061 0.65 -0.2
67,218 + Sama_0061 0.65 -0.7
67,218 + Sama_0061 0.65 +0.2
67,218 + Sama_0061 0.65 -1.0
67,218 + Sama_0061 0.65 -0.6
67,218 + Sama_0061 0.65 -2.2
67,218 + Sama_0061 0.65 -2.5
67,218 + Sama_0061 0.65 -0.2
67,220 + Sama_0061 0.65 -1.3
67,220 + Sama_0061 0.65 +0.0
67,220 + Sama_0061 0.65 -0.1
67,220 + Sama_0061 0.65 -0.2
67,220 + Sama_0061 0.65 -0.8
67,220 + Sama_0061 0.65 -1.6
67,220 + Sama_0061 0.65 -2.0
67,292 + Sama_0061 0.83 +0.7
67,292 + Sama_0061 0.83 +0.7
67,292 + Sama_0061 0.83 -0.8
67,292 + Sama_0061 0.83 -1.2
67,292 + Sama_0061 0.83 -0.8
67,292 + Sama_0061 0.83 +2.5
67,294 + Sama_0061 0.84 -0.8
67,294 + Sama_0061 0.84 -0.7
67,294 + Sama_0061 0.84 +0.4
67,294 + Sama_0061 0.84 -1.8
67,294 + Sama_0061 0.84 -1.2
67,311 + Sama_0061 0.88 -0.2
67,354 + -1.2
67,408 + -0.4

Or see this region's nucleotide sequence