Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0198 and SO0198.1 are separated by 282 nucleotides SO0198.1 and SO_0201 are separated by 66 nucleotides
SO0198: SO0198 - transcriptional regulator, TetR family (NCBI ptt file), at 208,491 to 209,105
SO0198
SO0198.1: SO0198.1 - putative transposase (NCBI ptt file), at 209,388 to 209,519
SO0198.1
SO_0201: SO_0201 - no description, at 209,586 to 210,287
_0201
Position (kb) 209
210 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 208.422 kb on + strand at 208.426 kb on - strand at 208.435 kb on - strand at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.561 kb on + strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.712 kb on + strand, within SO0198 at 208.737 kb on - strand, within SO0198 at 208.939 kb on + strand, within SO0198 at 208.945 kb on - strand, within SO0198 at 208.947 kb on - strand, within SO0198 at 209.006 kb on - strand, within SO0198 at 209.022 kb on - strand, within SO0198 at 209.099 kb on - strand at 209.163 kb on + strand at 209.195 kb on + strand at 209.253 kb on + strand at 209.261 kb on - strand at 209.261 kb on - strand at 209.281 kb on + strand at 209.281 kb on + strand at 209.352 kb on + strand at 209.352 kb on + strand at 209.424 kb on + strand, within SO0198.1 at 209.443 kb on - strand, within SO0198.1 at 209.523 kb on + strand at 209.531 kb on - strand at 209.543 kb on + strand at 209.566 kb on + strand at 209.571 kb on + strand at 209.574 kb on + strand at 209.579 kb on + strand at 209.610 kb on - strand at 209.708 kb on + strand, within SO_0201 at 209.765 kb on + strand, within SO_0201 at 209.824 kb on + strand, within SO_0201 at 209.832 kb on - strand, within SO_0201 at 209.832 kb on - strand, within SO_0201 at 209.887 kb on + strand, within SO_0201 at 209.960 kb on + strand, within SO_0201 at 209.997 kb on + strand, within SO_0201 at 209.997 kb on + strand, within SO_0201 at 210.005 kb on - strand, within SO_0201 at 210.005 kb on - strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.024 kb on - strand, within SO_0201 at 210.024 kb on - strand, within SO_0201 at 210.024 kb on - strand, within SO_0201 at 210.160 kb on + strand, within SO_0201 at 210.171 kb on + strand, within SO_0201 at 210.276 kb on + strand at 210.284 kb on - strand at 210.339 kb on + strand at 210.340 kb on + strand at 210.345 kb on - strand at 210.350 kb on + strand at 210.364 kb on + strand at 210.429 kb on + strand at 210.440 kb on + strand at 210.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml remove 208,422 + -3.5 208,426 - +0.1 208,435 - +0.5 208,556 + SO0198 0.11 -5.7 208,556 + SO0198 0.11 -4.2 208,556 + SO0198 0.11 -2.4 208,556 + SO0198 0.11 -4.7 208,556 + SO0198 0.11 -3.3 208,561 + SO0198 0.11 -3.8 208,564 - SO0198 0.12 -2.3 208,564 - SO0198 0.12 -3.9 208,564 - SO0198 0.12 -2.6 208,564 - SO0198 0.12 -1.9 208,564 - SO0198 0.12 -6.1 208,564 - SO0198 0.12 -1.3 208,564 - SO0198 0.12 -1.6 208,564 - SO0198 0.12 -1.9 208,564 - SO0198 0.12 -1.3 208,712 + SO0198 0.36 -4.2 208,737 - SO0198 0.40 -2.3 208,939 + SO0198 0.73 -2.8 208,945 - SO0198 0.74 -2.6 208,947 - SO0198 0.74 -0.1 209,006 - SO0198 0.84 -1.7 209,022 - SO0198 0.86 -2.3 209,099 - -1.8 209,163 + -1.2 209,195 + +0.8 209,253 + -0.1 209,261 - +1.1 209,261 - +0.1 209,281 + -0.0 209,281 + +2.9 209,352 + +0.3 209,352 + -1.1 209,424 + SO0198.1 0.27 +0.2 209,443 - SO0198.1 0.42 +0.0 209,523 + +1.5 209,531 - -0.7 209,543 + -0.6 209,566 + +0.1 209,571 + -0.0 209,574 + -0.3 209,579 + +0.2 209,610 - -0.6 209,708 + SO_0201 0.17 +0.4 209,765 + SO_0201 0.25 +0.8 209,824 + SO_0201 0.34 -0.5 209,832 - SO_0201 0.35 -0.9 209,832 - SO_0201 0.35 +0.3 209,887 + SO_0201 0.43 -0.1 209,960 + SO_0201 0.53 +0.2 209,997 + SO_0201 0.59 +0.0 209,997 + SO_0201 0.59 +0.1 210,005 - SO_0201 0.60 -0.4 210,005 - SO_0201 0.60 +0.0 210,016 + SO_0201 0.61 -0.3 210,016 + SO_0201 0.61 +0.3 210,016 + SO_0201 0.61 -0.3 210,016 + SO_0201 0.61 +1.1 210,024 - SO_0201 0.62 +0.6 210,024 - SO_0201 0.62 -0.6 210,024 - SO_0201 0.62 +0.4 210,160 + SO_0201 0.82 +0.0 210,171 + SO_0201 0.83 -0.8 210,276 + +0.9 210,284 - -0.4 210,339 + -0.1 210,340 + -1.7 210,345 - -0.9 210,350 + -0.8 210,364 + +1.2 210,429 + +0.2 210,440 + +0.3 210,512 - +0.1
Or see this region's nucleotide sequence