Strain Fitness in Shewanella oneidensis MR-1 around SO4720

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
4,924,032	+				+1.1
4,924,143	-				+1.0
4,924,437	+		SO4719	0.30	+0.3
4,924,444	+		SO4719	0.31	+0.2
4,924,489	+		SO4719	0.36	+1.0
4,924,489	+		SO4719	0.36	+0.9
4,924,490	-		SO4719	0.36	+1.2
4,924,638	-		SO4719	0.54	+1.0
4,924,694	+		SO4719	0.61	-1.3
4,924,694	+		SO4719	0.61	-0.7
4,924,702	-		SO4719	0.62	+0.7
4,924,714	-		SO4719	0.63	+1.0
4,924,716	+		SO4719	0.64	+1.2
4,924,762	+		SO4719	0.69	+0.9
4,924,762	+		SO4719	0.69	+1.2
4,924,768	-		SO4719	0.70	+1.6
4,924,770	-		SO4719	0.70	+1.1
4,924,770	-		SO4719	0.70	+0.1
4,924,770	-		SO4719	0.70	+0.6
4,924,774	-		SO4719	0.71	-1.7
4,924,853	+		SO4719	0.80	+0.4
4,924,901	+		SO4719	0.86	+1.1
4,924,942	-				+0.9
4,924,966	+				+0.1
4,924,991	+				+0.1
4,924,991	+				+0.8
4,924,991	+				+0.9
4,924,999	-				+1.7
4,925,033	-				+1.1
4,925,033	-				+1.3
4,925,121	-		SO4720	0.15	+1.0
4,925,133	+		SO4720	0.17	+1.1
4,925,133	-		SO4720	0.17	+1.4
4,925,141	-		SO4720	0.18	+0.3
4,925,141	-		SO4720	0.18	+0.0
4,925,150	+		SO4720	0.19	+0.7
4,925,158	-		SO4720	0.21	+0.9
4,925,245	-		SO4720	0.33	-1.1
4,925,327	-		SO4720	0.44	+0.8
4,925,386	-		SO4720	0.53	+2.0
4,925,386	-		SO4720	0.53	+0.7
4,925,386	-		SO4720	0.53	+1.1
4,925,421	+		SO4720	0.58	+0.6
4,925,421	+		SO4720	0.58	+1.6
4,925,421	+		SO4720	0.58	+0.4
4,925,427	-		SO4720	0.59	+1.4
4,925,429	-		SO4720	0.59	+0.4
4,925,429	-		SO4720	0.59	+0.7
4,925,468	-		SO4720	0.64	+0.8
4,925,530	-		SO4720	0.73	+1.4
4,925,556	+		SO4720	0.77	+0.3
4,925,637	+		SO4720	0.88	+1.4
4,925,645	-		SO4720	0.89	+0.7
4,925,645	-		SO4720	0.89	+1.0
4,925,671	-				+1.3
4,925,720	+				+1.0
4,925,789	+				+0.5
4,925,797	-		SO4721	0.10	+1.4
4,925,797	-		SO4721	0.10	+0.5
4,925,834	+		SO4721	0.16	+1.6
4,925,842	+		SO4721	0.17	+0.9
4,925,861	-		SO4721	0.19	+1.8
4,925,861	-		SO4721	0.19	+0.6
4,925,907	-		SO4721	0.26	+1.1
4,926,100	-		SO4721	0.53	+1.5
4,926,198	+		SO4721	0.67	+0.5
4,926,206	-		SO4721	0.68	-0.4
4,926,279	+		SO4721	0.79	+1.2
4,926,292	+		SO4721	0.80	+0.6
4,926,302	+		SO4721	0.82	+1.1
4,926,302	+		SO4721	0.82	+0.8
4,926,310	-		SO4721	0.83	+1.0
4,926,361	+				-0.0
4,926,361	+				-0.5
4,926,361	+				-1.4
4,926,369	-				+0.9
4,926,369	-				+1.7
4,926,384	+				+0.3
4,926,392	-				+1.1
4,926,407	+				+1.6
4,926,500	-	mobA	SO4722	0.14	+1.1
4,926,506	+	mobA	SO4722	0.15	+0.9
4,926,506	+	mobA	SO4722	0.15	+1.5
4,926,514	-	mobA	SO4722	0.17	+1.6
4,926,514	-	mobA	SO4722	0.17	+2.1
4,926,545	+	mobA	SO4722	0.22	-0.9
4,926,552	-	mobA	SO4722	0.23	+1.7
4,926,553	-	mobA	SO4722	0.23	+1.8
4,926,553	-	mobA	SO4722	0.23	+1.6
4,926,563	-	mobA	SO4722	0.25	+1.8
4,926,671	-	mobA	SO4722	0.43	+1.8